Wall clock time and date at job start Mon Mar 30 2020 01:25:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42902 * 113.99779 * 2 1 4 4 H 1.08994 * 110.27542 * 332.09370 * 3 2 1 5 5 C 1.54601 * 110.38951 * 94.23832 * 3 2 1 6 6 C 1.54930 * 102.92322 * 140.91301 * 5 3 2 7 7 N 1.48538 * 103.22725 * 322.58752 * 6 5 3 8 8 C 1.46898 * 110.99850 * 159.71879 * 7 6 5 9 9 C 1.53004 * 109.47178 * 52.60579 * 8 7 6 10 10 C 1.50698 * 109.46822 * 179.97438 * 9 8 7 11 11 O 1.21283 * 120.00638 * 0.02562 * 10 9 8 12 12 N 1.34779 * 119.99936 * 179.97438 * 10 9 8 13 13 C 1.46502 * 119.99726 * 0.02562 * 12 10 9 14 14 C 1.46496 * 120.00216 * 180.02562 * 12 10 9 15 15 C 1.50706 * 109.47106 * 269.99787 * 14 12 10 16 16 H 1.07999 * 119.99515 * 0.02562 * 15 14 12 17 17 C 1.37870 * 120.00176 * 180.02562 * 15 14 12 18 18 N 1.31520 * 119.99883 * 0.02562 * 17 15 14 19 19 Si 1.86800 * 120.00043 * 180.02562 * 17 15 14 20 20 H 1.48499 * 109.47293 * 89.99746 * 19 17 15 21 21 H 1.48504 * 109.47104 * 209.99992 * 19 17 15 22 22 H 1.48495 * 109.47249 * 329.99739 * 19 17 15 23 23 C 1.47901 * 105.82128 * 39.20614 * 7 6 5 24 24 H 1.09000 * 109.47198 * 299.99543 * 1 2 3 25 25 H 1.09003 * 109.46821 * 59.99758 * 1 2 3 26 26 H 1.08999 * 109.46690 * 179.97438 * 1 2 3 27 27 H 1.08998 * 110.72360 * 259.27611 * 5 3 2 28 28 H 1.09003 * 110.71957 * 22.37681 * 5 3 2 29 29 H 1.08994 * 110.67043 * 204.15127 * 6 5 3 30 30 H 1.09004 * 110.66464 * 81.01703 * 6 5 3 31 31 H 1.08996 * 109.47442 * 292.60324 * 8 7 6 32 32 H 1.09004 * 109.46841 * 172.60063 * 8 7 6 33 33 H 1.08996 * 109.47142 * 59.99561 * 9 8 7 34 34 H 1.09004 * 109.46812 * 299.99501 * 9 8 7 35 35 H 1.09003 * 109.47272 * 270.00147 * 13 12 10 36 36 H 1.09002 * 109.47278 * 30.00038 * 13 12 10 37 37 H 1.09000 * 109.47206 * 149.99940 * 13 12 10 38 38 H 1.09001 * 109.47001 * 150.00078 * 14 12 10 39 39 H 1.09000 * 109.47574 * 30.00294 * 14 12 10 40 40 H 0.97004 * 119.99507 * 180.02562 * 18 17 15 41 41 H 1.09001 * 109.91812 * 94.01961 * 23 7 6 42 42 H 1.09001 * 109.91424 * 215.32085 * 23 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3384 2.0180 -0.4785 5 6 2.3271 1.7540 1.4452 6 6 3.6848 2.4843 1.2915 7 7 4.3952 1.6703 0.2722 8 6 5.4758 2.4409 -0.3573 9 6 6.3799 3.0310 0.7269 10 6 7.4888 3.8210 0.0811 11 8 7.5499 3.9044 -1.1274 12 7 8.4123 4.4359 0.8464 13 6 8.3382 4.3357 2.3061 14 6 9.4900 5.2044 0.2186 15 6 10.6690 4.3008 -0.0357 16 1 10.6201 3.2583 0.2422 17 6 11.8099 4.8050 -0.6230 18 7 11.8695 6.0746 -0.9608 19 14 13.2711 3.6848 -0.9388 20 1 13.1453 3.0754 -2.2871 21 1 14.5258 4.4761 -0.8681 22 1 13.3037 2.6125 0.0879 23 6 3.3702 1.2851 -0.7221 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 1.5615 2.4366 1.8138 28 1 2.4226 0.8913 2.1046 29 1 4.2315 2.4826 2.2344 30 1 3.5353 3.5032 0.9341 31 1 5.0479 3.2477 -0.9523 32 1 6.0617 1.7854 -1.0018 33 1 6.8078 2.2242 1.3219 34 1 5.7940 3.6864 1.3714 35 1 7.7344 5.1550 2.6964 36 1 7.8826 3.3848 2.5824 37 1 9.3426 4.3927 2.7256 38 1 9.7906 6.0163 0.8808 39 1 9.1385 5.6178 -0.7267 40 1 12.6722 6.4293 -1.3744 41 1 3.3643 1.9997 -1.5452 42 1 3.5759 0.2829 -1.0982 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000234795310.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:25:54 Heat of formation + Delta-G solvation = -73.837355 kcal Electronic energy + Delta-G solvation = -20885.760496 eV Core-core repulsion = 17673.117599 eV Total energy + Delta-G solvation = -3212.642897 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 270.173 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -39.76140 -38.84307 -37.09914 -34.80538 -32.88944 -32.41527 -29.72697 -28.77739 -27.54825 -26.41202 -25.70683 -23.96017 -22.39334 -21.10526 -20.68895 -18.27161 -17.21012 -16.74358 -16.51165 -15.80432 -15.64873 -15.22018 -15.11036 -14.66763 -14.50520 -14.10915 -13.98763 -13.10860 -12.90727 -12.69990 -12.41288 -12.19017 -12.10545 -11.87967 -11.75520 -11.74634 -11.49055 -11.33210 -11.08417 -10.91199 -10.89850 -10.80117 -10.54142 -10.13968 -9.86830 -9.61047 -8.87897 -8.48497 -8.41920 -7.62279 -6.02822 -4.07486 3.32886 3.38303 3.39808 3.43182 3.47583 3.73799 4.14368 4.38492 4.46116 4.47945 4.77936 4.99550 5.03523 5.05236 5.12118 5.22695 5.24846 5.30286 5.35248 5.40646 5.42651 5.56301 5.61680 5.66369 5.75393 5.78888 5.88764 5.94342 6.08665 6.18415 6.24779 6.75267 6.92053 6.97961 7.07544 7.45560 7.56208 7.93773 8.25228 8.44019 8.92028 9.11716 9.57688 11.05288 Molecular weight = 270.17amu Principal moments of inertia in cm(-1) A = 0.040027 B = 0.003177 C = 0.003078 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 699.357974 B = 8812.451398 C = 9095.688528 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.378 6.378 3 C 0.078 3.922 4 H 0.067 0.933 5 C -0.145 4.145 6 C 0.032 3.968 7 N -0.514 5.514 8 C 0.063 3.937 9 C -0.138 4.138 10 C 0.504 3.496 11 O -0.545 6.545 12 N -0.603 5.603 13 C 0.084 3.916 14 C 0.244 3.756 15 C -0.525 4.525 16 H 0.057 0.943 17 C 0.060 3.940 18 N -0.896 5.896 19 Si 0.899 3.101 20 H -0.279 1.279 21 H -0.286 1.286 22 H -0.274 1.274 23 C 0.037 3.963 24 H 0.040 0.960 25 H 0.040 0.960 26 H 0.085 0.915 27 H 0.071 0.929 28 H 0.086 0.914 29 H 0.087 0.913 30 H 0.047 0.953 31 H 0.044 0.956 32 H 0.087 0.913 33 H 0.096 0.904 34 H 0.084 0.916 35 H 0.043 0.957 36 H 0.058 0.942 37 H 0.073 0.927 38 H 0.032 0.968 39 H 0.043 0.957 40 H 0.263 0.737 41 H 0.056 0.944 42 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.279 -7.564 6.804 23.586 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.296 6.296 3 C 0.020 3.980 4 H 0.085 0.915 5 C -0.183 4.183 6 C -0.096 4.096 7 N -0.239 5.239 8 C -0.065 4.065 9 C -0.179 4.179 10 C 0.291 3.709 11 O -0.423 6.423 12 N -0.336 5.336 13 C -0.061 4.061 14 C 0.125 3.875 15 C -0.564 4.564 16 H 0.075 0.925 17 C -0.142 4.142 18 N -0.535 5.535 19 Si 0.726 3.274 20 H -0.205 1.205 21 H -0.212 1.212 22 H -0.199 1.199 23 C -0.091 4.091 24 H 0.059 0.941 25 H 0.059 0.941 26 H 0.104 0.896 27 H 0.089 0.911 28 H 0.105 0.895 29 H 0.106 0.894 30 H 0.066 0.934 31 H 0.063 0.937 32 H 0.105 0.895 33 H 0.114 0.886 34 H 0.102 0.898 35 H 0.061 0.939 36 H 0.077 0.923 37 H 0.092 0.908 38 H 0.050 0.950 39 H 0.061 0.939 40 H 0.073 0.927 41 H 0.074 0.926 42 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -20.739 -7.984 6.315 23.102 hybrid contribution 0.371 0.453 -0.438 0.731 sum -20.368 -7.531 5.877 22.497 Atomic orbital electron populations 1.22784 0.81306 1.02732 0.99833 1.87985 1.19383 1.27312 1.94912 1.23029 0.94632 0.84636 0.95739 0.91500 1.23022 0.96993 1.01036 0.97288 1.23228 0.93746 0.95264 0.97357 1.64856 1.08838 1.38281 1.11929 1.22043 0.92329 0.96466 0.95638 1.21699 0.96532 1.00313 0.99310 1.20279 0.82935 0.80268 0.87457 1.90666 1.75691 1.61750 1.14216 1.48161 1.28225 1.51290 1.05877 1.21638 1.02618 1.00103 0.81700 1.19286 0.83333 0.90738 0.94139 1.21440 0.98490 0.96197 1.40268 0.92454 1.24946 0.98729 0.95175 0.95341 1.69941 1.28791 1.12815 1.41960 0.86488 0.81601 0.80465 0.78812 1.20533 1.21157 1.19903 1.22934 0.89369 1.02799 0.93970 0.94130 0.94113 0.89644 0.91063 0.89544 0.89425 0.93432 0.93741 0.89460 0.88612 0.89792 0.93862 0.92313 0.90805 0.95045 0.93897 0.92742 0.92596 0.88882 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.21 10.85 101.05 1.10 1.30 16 2 O -0.38 -3.94 10.30 -35.23 -0.36 -4.30 16 3 C 0.08 0.75 3.47 -25.37 -0.09 0.66 16 4 H 0.07 0.55 7.81 -51.93 -0.41 0.14 16 5 C -0.15 -1.29 6.81 -24.87 -0.17 -1.46 16 6 C 0.03 0.32 5.10 -1.90 -0.01 0.31 16 7 N -0.51 -6.42 5.40 -230.45 -1.24 -7.66 16 8 C 0.06 0.93 4.32 -3.82 -0.02 0.91 16 9 C -0.14 -2.07 3.91 -27.88 -0.11 -2.17 16 10 C 0.50 10.56 7.67 -10.99 -0.08 10.48 16 11 O -0.55 -13.83 15.56 5.55 0.09 -13.74 16 12 N -0.60 -12.98 2.86 -182.95 -0.52 -13.50 16 13 C 0.08 1.33 10.24 59.85 0.61 1.94 16 14 C 0.24 6.50 5.16 -5.19 -0.03 6.48 16 15 C -0.53 -15.14 9.39 -34.44 -0.32 -15.46 16 16 H 0.06 1.65 7.81 -52.49 -0.41 1.24 16 17 C 0.06 1.74 5.46 -17.82 -0.10 1.64 16 18 N -0.90 -26.95 13.29 55.43 0.74 -26.21 16 19 Si 0.90 22.15 29.54 -169.99 -5.02 17.13 16 20 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 21 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 22 H -0.27 -6.59 7.11 56.52 0.40 -6.19 16 23 C 0.04 0.42 6.51 -2.75 -0.02 0.40 16 24 H 0.04 0.24 8.14 -51.93 -0.42 -0.18 16 25 H 0.04 0.24 8.10 -51.93 -0.42 -0.18 16 26 H 0.09 0.49 8.14 -51.93 -0.42 0.06 16 27 H 0.07 0.51 8.14 -51.93 -0.42 0.08 16 28 H 0.09 0.83 8.08 -51.93 -0.42 0.41 16 29 H 0.09 0.83 7.66 -51.93 -0.40 0.43 16 30 H 0.05 0.48 8.00 -51.93 -0.42 0.06 16 31 H 0.04 0.68 7.77 -51.93 -0.40 0.28 16 32 H 0.09 1.42 8.10 -51.93 -0.42 1.00 16 33 H 0.10 1.34 7.40 -51.93 -0.38 0.96 16 34 H 0.08 1.06 6.76 -51.93 -0.35 0.71 16 35 H 0.04 0.59 8.14 -51.93 -0.42 0.16 16 36 H 0.06 0.77 6.44 -51.93 -0.33 0.43 16 37 H 0.07 1.22 8.07 -51.93 -0.42 0.80 16 38 H 0.03 0.84 8.07 -51.93 -0.42 0.42 16 39 H 0.04 1.28 7.42 -51.93 -0.39 0.90 16 40 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 41 H 0.06 0.61 7.57 -51.93 -0.39 0.22 16 42 H 0.09 1.11 7.96 -51.93 -0.41 0.70 16 LS Contribution 341.06 15.07 5.14 5.14 Total: -1.00 -33.90 341.06 -7.64 -41.54 By element: Atomic # 1 Polarization: 3.81 SS G_CDS: -7.22 Total: -3.41 kcal Atomic # 6 Polarization: 4.27 SS G_CDS: 0.77 Total: 5.03 kcal Atomic # 7 Polarization: -46.35 SS G_CDS: -1.03 Total: -47.38 kcal Atomic # 8 Polarization: -17.77 SS G_CDS: -0.28 Total: -18.05 kcal Atomic # 14 Polarization: 22.15 SS G_CDS: -5.02 Total: 17.13 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -33.90 -7.64 -41.54 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000234795310.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.300 kcal (2) G-P(sol) polarization free energy of solvation -33.897 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.197 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.640 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.537 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.837 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds