Wall clock time and date at job start Mon Mar 30 2020 01:25:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42902 * 113.99779 * 2 1 4 4 H 1.08994 * 110.27542 * 332.09370 * 3 2 1 5 5 C 1.54601 * 110.38951 * 94.23832 * 3 2 1 6 6 C 1.54930 * 102.92322 * 140.91301 * 5 3 2 7 7 N 1.48538 * 103.22725 * 322.58752 * 6 5 3 8 8 C 1.46898 * 110.99850 * 159.71879 * 7 6 5 9 9 C 1.53004 * 109.47178 * 52.60579 * 8 7 6 10 10 C 1.50698 * 109.46822 * 179.97438 * 9 8 7 11 11 O 1.21283 * 120.00638 * 0.02562 * 10 9 8 12 12 N 1.34779 * 119.99936 * 179.97438 * 10 9 8 13 13 C 1.46502 * 119.99726 * 0.02562 * 12 10 9 14 14 C 1.46496 * 120.00216 * 180.02562 * 12 10 9 15 15 C 1.50706 * 109.47106 * 269.99787 * 14 12 10 16 16 H 1.07999 * 119.99515 * 0.02562 * 15 14 12 17 17 C 1.37870 * 120.00176 * 180.02562 * 15 14 12 18 18 N 1.31520 * 119.99883 * 0.02562 * 17 15 14 19 19 Si 1.86800 * 120.00043 * 180.02562 * 17 15 14 20 20 H 1.48499 * 109.47293 * 89.99746 * 19 17 15 21 21 H 1.48504 * 109.47104 * 209.99992 * 19 17 15 22 22 H 1.48495 * 109.47249 * 329.99739 * 19 17 15 23 23 C 1.47901 * 105.82128 * 39.20614 * 7 6 5 24 24 H 1.09000 * 109.47198 * 299.99543 * 1 2 3 25 25 H 1.09003 * 109.46821 * 59.99758 * 1 2 3 26 26 H 1.08999 * 109.46690 * 179.97438 * 1 2 3 27 27 H 1.08998 * 110.72360 * 259.27611 * 5 3 2 28 28 H 1.09003 * 110.71957 * 22.37681 * 5 3 2 29 29 H 1.08994 * 110.67043 * 204.15127 * 6 5 3 30 30 H 1.09004 * 110.66464 * 81.01703 * 6 5 3 31 31 H 1.08996 * 109.47442 * 292.60324 * 8 7 6 32 32 H 1.09004 * 109.46841 * 172.60063 * 8 7 6 33 33 H 1.08996 * 109.47142 * 59.99561 * 9 8 7 34 34 H 1.09004 * 109.46812 * 299.99501 * 9 8 7 35 35 H 1.09003 * 109.47272 * 270.00147 * 13 12 10 36 36 H 1.09002 * 109.47278 * 30.00038 * 13 12 10 37 37 H 1.09000 * 109.47206 * 149.99940 * 13 12 10 38 38 H 1.09001 * 109.47001 * 150.00078 * 14 12 10 39 39 H 1.09000 * 109.47574 * 30.00294 * 14 12 10 40 40 H 0.97004 * 119.99507 * 180.02562 * 18 17 15 41 41 H 1.09001 * 109.91812 * 94.01961 * 23 7 6 42 42 H 1.09001 * 109.91424 * 215.32085 * 23 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3384 2.0180 -0.4785 5 6 2.3271 1.7540 1.4452 6 6 3.6848 2.4843 1.2915 7 7 4.3952 1.6703 0.2722 8 6 5.4758 2.4409 -0.3573 9 6 6.3799 3.0310 0.7269 10 6 7.4888 3.8210 0.0811 11 8 7.5499 3.9044 -1.1274 12 7 8.4123 4.4359 0.8464 13 6 8.3382 4.3357 2.3061 14 6 9.4900 5.2044 0.2186 15 6 10.6690 4.3008 -0.0357 16 1 10.6201 3.2583 0.2422 17 6 11.8099 4.8050 -0.6230 18 7 11.8695 6.0746 -0.9608 19 14 13.2711 3.6848 -0.9388 20 1 13.1453 3.0754 -2.2871 21 1 14.5258 4.4761 -0.8681 22 1 13.3037 2.6125 0.0879 23 6 3.3702 1.2851 -0.7221 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 1.5615 2.4366 1.8138 28 1 2.4226 0.8913 2.1046 29 1 4.2315 2.4826 2.2344 30 1 3.5353 3.5032 0.9341 31 1 5.0479 3.2477 -0.9523 32 1 6.0617 1.7854 -1.0018 33 1 6.8078 2.2242 1.3219 34 1 5.7940 3.6864 1.3714 35 1 7.7344 5.1550 2.6964 36 1 7.8826 3.3848 2.5824 37 1 9.3426 4.3927 2.7256 38 1 9.7906 6.0163 0.8808 39 1 9.1385 5.6178 -0.7267 40 1 12.6722 6.4293 -1.3744 41 1 3.3643 1.9997 -1.5452 42 1 3.5759 0.2829 -1.0982 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000234795310.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:25:54 Heat of formation + Delta-G solvation = -99.084462 kcal Electronic energy + Delta-G solvation = -20886.855293 eV Core-core repulsion = 17673.117599 eV Total energy + Delta-G solvation = -3213.737694 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 270.173 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.91427 -40.15427 -37.94612 -36.59851 -34.77364 -33.74666 -30.87159 -29.86396 -29.07566 -27.31286 -26.99862 -25.50963 -23.91829 -21.90732 -21.73432 -19.84479 -18.71025 -18.04311 -17.93370 -17.10534 -16.85836 -16.76955 -16.17677 -15.98871 -15.50054 -15.30785 -15.20360 -14.44031 -14.15422 -13.90576 -13.80836 -13.56357 -13.45230 -13.18416 -13.13181 -12.84632 -12.63132 -12.61485 -12.46999 -12.25995 -12.20173 -12.17935 -11.98750 -11.69686 -11.59663 -10.65858 -10.62115 -10.53262 -9.45778 -9.41170 -8.23398 -6.38359 1.36094 1.39328 1.49039 1.83057 2.27915 2.41627 2.80009 3.02135 3.06229 3.57383 3.68225 3.85644 4.02581 4.05949 4.14009 4.33541 4.40445 4.45775 4.53182 4.56465 4.57978 4.67231 4.72876 4.81708 4.88581 4.90048 4.91320 4.93760 4.97568 5.01809 5.07223 5.19510 5.22139 5.55631 5.83433 5.85163 5.95167 6.05383 6.30532 6.68854 6.78843 7.27359 7.47803 8.83682 Molecular weight = 270.17amu Principal moments of inertia in cm(-1) A = 0.040027 B = 0.003177 C = 0.003078 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 699.357974 B = 8812.451398 C = 9095.688528 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.402 6.402 3 C 0.079 3.921 4 H 0.083 0.917 5 C -0.137 4.137 6 C 0.027 3.973 7 N -0.520 5.520 8 C 0.072 3.928 9 C -0.117 4.117 10 C 0.494 3.506 11 O -0.602 6.602 12 N -0.611 5.611 13 C 0.078 3.922 14 C 0.257 3.743 15 C -0.543 4.543 16 H 0.053 0.947 17 C 0.006 3.994 18 N -0.929 5.929 19 Si 0.968 3.032 20 H -0.281 1.281 21 H -0.273 1.273 22 H -0.261 1.261 23 C 0.032 3.968 24 H 0.052 0.948 25 H 0.049 0.951 26 H 0.094 0.906 27 H 0.095 0.905 28 H 0.080 0.920 29 H 0.101 0.899 30 H 0.052 0.948 31 H 0.032 0.968 32 H 0.061 0.939 33 H 0.115 0.885 34 H 0.119 0.881 35 H 0.073 0.927 36 H 0.095 0.905 37 H 0.064 0.936 38 H 0.025 0.975 39 H -0.003 1.003 40 H 0.267 0.733 41 H 0.054 0.946 42 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.435 -8.590 8.827 25.594 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.322 6.322 3 C 0.021 3.979 4 H 0.101 0.899 5 C -0.175 4.175 6 C -0.101 4.101 7 N -0.245 5.245 8 C -0.057 4.057 9 C -0.157 4.157 10 C 0.283 3.717 11 O -0.484 6.484 12 N -0.342 5.342 13 C -0.064 4.064 14 C 0.136 3.864 15 C -0.581 4.581 16 H 0.071 0.929 17 C -0.193 4.193 18 N -0.569 5.569 19 Si 0.792 3.208 20 H -0.207 1.207 21 H -0.198 1.198 22 H -0.186 1.186 23 C -0.096 4.096 24 H 0.071 0.929 25 H 0.067 0.933 26 H 0.113 0.887 27 H 0.113 0.887 28 H 0.099 0.901 29 H 0.119 0.881 30 H 0.071 0.929 31 H 0.050 0.950 32 H 0.079 0.921 33 H 0.133 0.867 34 H 0.137 0.863 35 H 0.091 0.909 36 H 0.113 0.887 37 H 0.083 0.917 38 H 0.043 0.957 39 H 0.015 0.985 40 H 0.076 0.924 41 H 0.073 0.927 42 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -21.924 -9.022 8.396 25.151 hybrid contribution 0.655 0.783 -1.069 1.479 sum -21.269 -8.238 7.327 23.957 Atomic orbital electron populations 1.22970 0.79575 1.03767 1.00855 1.87946 1.21353 1.27780 1.95080 1.23031 0.93767 0.84903 0.96202 0.89899 1.22990 0.96876 1.01100 0.96561 1.23381 0.94391 0.95310 0.96970 1.64830 1.09057 1.38272 1.12386 1.21827 0.92852 0.95679 0.95306 1.21609 0.94516 1.00346 0.99241 1.21352 0.83658 0.79750 0.86933 1.90635 1.77144 1.63648 1.16941 1.48206 1.27016 1.50603 1.08411 1.21957 1.03213 1.03346 0.77921 1.18761 0.84348 0.90929 0.92379 1.21711 0.99556 0.96192 1.40674 0.92911 1.25881 1.01816 0.96730 0.94857 1.70055 1.29822 1.14570 1.42445 0.85405 0.78055 0.78703 0.78596 1.20692 1.19830 1.18554 1.22960 0.90477 1.01973 0.94165 0.92886 0.93252 0.88735 0.88672 0.90144 0.88073 0.92931 0.95008 0.92057 0.86689 0.86315 0.90900 0.88650 0.91676 0.95750 0.98531 0.92376 0.92739 0.90204 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.29 10.85 113.37 1.23 1.52 16 2 O -0.40 -7.77 10.30 -148.98 -1.53 -9.31 16 3 C 0.08 1.38 3.47 31.48 0.11 1.49 16 4 H 0.08 1.16 7.81 -2.39 -0.02 1.14 16 5 C -0.14 -2.04 6.81 31.80 0.22 -1.82 16 6 C 0.03 0.46 5.10 86.65 0.44 0.90 16 7 N -0.52 -12.25 5.40 -883.01 -4.76 -17.01 16 8 C 0.07 2.08 4.32 86.31 0.37 2.45 16 9 C -0.12 -3.27 3.91 29.85 0.12 -3.16 16 10 C 0.49 20.75 7.67 87.66 0.67 21.42 16 11 O -0.60 -31.83 15.56 -3.04 -0.05 -31.88 16 12 N -0.61 -26.21 2.86 -851.11 -2.43 -28.64 16 13 C 0.08 2.28 10.24 127.77 1.31 3.58 16 14 C 0.26 14.17 5.16 85.64 0.44 14.61 16 15 C -0.54 -31.92 9.39 25.60 0.24 -31.68 16 16 H 0.05 3.07 7.81 -2.91 -0.02 3.05 16 17 C 0.01 0.35 5.46 84.65 0.46 0.81 16 18 N -0.93 -57.02 13.29 21.45 0.28 -56.74 16 19 Si 0.97 45.62 29.54 68.60 2.03 47.65 16 20 H -0.28 -13.25 7.11 99.48 0.71 -12.54 16 21 H -0.27 -12.25 7.11 99.48 0.71 -11.54 16 22 H -0.26 -11.69 7.11 99.48 0.71 -10.99 16 23 C 0.03 0.71 6.51 86.45 0.56 1.27 16 24 H 0.05 0.49 8.14 -2.39 -0.02 0.47 16 25 H 0.05 0.49 8.10 -2.39 -0.02 0.47 16 26 H 0.09 0.91 8.14 -2.39 -0.02 0.89 16 27 H 0.09 0.98 8.14 -2.39 -0.02 0.96 16 28 H 0.08 1.32 8.08 -2.39 -0.02 1.30 16 29 H 0.10 1.49 7.66 -2.39 -0.02 1.48 16 30 H 0.05 0.89 8.00 -2.38 -0.02 0.87 16 31 H 0.03 0.99 7.77 -2.39 -0.02 0.97 16 32 H 0.06 2.07 8.10 -2.38 -0.02 2.05 16 33 H 0.12 2.84 7.40 -2.39 -0.02 2.82 16 34 H 0.12 2.53 6.76 -2.38 -0.02 2.51 16 35 H 0.07 1.73 8.14 -2.39 -0.02 1.71 16 36 H 0.10 2.10 6.44 -2.39 -0.02 2.09 16 37 H 0.06 2.03 8.07 -2.39 -0.02 2.02 16 38 H 0.02 1.35 8.07 -2.39 -0.02 1.33 16 39 H 0.00 -0.22 7.42 -2.39 -0.02 -0.24 16 40 H 0.27 15.34 8.31 -92.71 -0.77 14.57 16 41 H 0.05 1.19 7.57 -2.39 -0.02 1.18 16 42 H 0.08 1.94 7.96 -2.39 -0.02 1.92 16 Total: -1.00 -76.73 341.06 0.68 -76.05 By element: Atomic # 1 Polarization: 7.49 SS G_CDS: 0.97 Total: 8.47 kcal Atomic # 6 Polarization: 5.24 SS G_CDS: 6.18 Total: 11.41 kcal Atomic # 7 Polarization: -95.48 SS G_CDS: -6.91 Total: -102.40 kcal Atomic # 8 Polarization: -39.60 SS G_CDS: -1.58 Total: -41.18 kcal Atomic # 14 Polarization: 45.62 SS G_CDS: 2.03 Total: 47.65 kcal Total: -76.73 0.68 -76.05 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000234795310.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.038 kcal (2) G-P(sol) polarization free energy of solvation -76.730 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.768 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.683 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.047 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.084 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds