Wall clock time and date at job start Mon Mar 30 2020 01:25:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42902 * 114.00061 * 2 1 4 4 H 1.08999 * 110.76313 * 26.80464 * 3 2 1 5 5 C 1.55136 * 110.70777 * 263.60155 * 3 2 1 6 6 C 1.54910 * 101.65131 * 205.96646 * 5 3 2 7 7 N 1.47839 * 104.79725 * 37.07211 * 6 5 3 8 8 C 1.46901 * 111.00094 * 213.63685 * 7 6 5 9 9 C 1.53000 * 109.46769 * 290.84320 * 8 7 6 10 10 C 1.50706 * 109.46735 * 180.02562 * 9 8 7 11 11 O 1.21273 * 120.00140 * 359.97438 * 10 9 8 12 12 N 1.34779 * 119.99767 * 180.02562 * 10 9 8 13 13 C 1.46505 * 120.00050 * 359.97438 * 12 10 9 14 14 C 1.46496 * 120.00054 * 179.97438 * 12 10 9 15 15 C 1.50705 * 109.47066 * 89.99681 * 14 12 10 16 16 H 1.08001 * 119.99987 * 0.02562 * 15 14 12 17 17 C 1.37872 * 120.00127 * 179.97438 * 15 14 12 18 18 N 1.31512 * 120.00059 * 0.02562 * 17 15 14 19 19 Si 1.86801 * 120.00144 * 180.02562 * 17 15 14 20 20 H 1.48499 * 109.46966 * 59.99914 * 19 17 15 21 21 H 1.48498 * 109.47378 * 179.97438 * 19 17 15 22 22 H 1.48494 * 109.47029 * 300.00164 * 19 17 15 23 23 C 1.47445 * 108.56660 * 335.90202 * 7 6 5 24 24 H 1.09000 * 109.46856 * 300.00007 * 1 2 3 25 25 H 1.09001 * 109.47110 * 59.99462 * 1 2 3 26 26 H 1.08999 * 109.47560 * 179.97438 * 1 2 3 27 27 H 1.08999 * 110.99026 * 324.05723 * 5 3 2 28 28 H 1.09005 * 110.98968 * 87.87358 * 5 3 2 29 29 H 1.08995 * 110.37196 * 278.24067 * 6 5 3 30 30 H 1.09005 * 110.37080 * 155.89665 * 6 5 3 31 31 H 1.09002 * 109.47401 * 170.84027 * 8 7 6 32 32 H 1.09001 * 109.46874 * 50.84040 * 8 7 6 33 33 H 1.09001 * 109.47194 * 299.99524 * 9 8 7 34 34 H 1.08992 * 109.47399 * 59.99697 * 9 8 7 35 35 H 1.09003 * 109.46862 * 90.00175 * 13 12 10 36 36 H 1.08996 * 109.47101 * 210.00301 * 13 12 10 37 37 H 1.09003 * 109.46885 * 329.99908 * 13 12 10 38 38 H 1.08998 * 109.47205 * 209.99546 * 14 12 10 39 39 H 1.08997 * 109.47416 * 330.00406 * 14 12 10 40 40 H 0.97001 * 120.00292 * 180.02562 * 18 17 15 41 41 H 1.09000 * 109.88966 * 120.39554 * 23 7 6 42 42 H 1.09002 * 109.88969 * 241.58336 * 23 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 1 1.3364 2.0285 0.4596 5 6 2.3811 1.7408 -1.4421 6 6 3.5289 2.7476 -1.1796 7 7 4.2778 2.1774 -0.0395 8 6 4.8216 3.2397 0.8172 9 6 5.9347 3.9773 0.0704 10 6 6.4930 5.0667 0.9495 11 8 6.0444 5.2366 2.0634 12 7 7.4901 5.8527 0.4975 13 6 8.0317 5.6478 -0.8483 14 6 8.0325 6.9120 1.3518 15 6 9.1743 6.3636 2.1683 16 1 9.4670 5.3295 2.0611 17 6 9.8460 7.1822 3.0512 18 7 9.4900 8.4415 3.1813 19 14 11.2618 6.5027 4.0627 20 1 12.3258 6.0058 3.1537 21 1 11.8124 7.5767 4.9279 22 1 10.7732 5.3854 4.9101 23 6 3.3743 1.2953 0.7217 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5139 -0.8899 26 1 -0.3634 -1.0276 -0.0005 27 1 2.7330 0.8917 -2.0280 28 1 1.5382 2.2286 -1.9317 29 1 3.1238 3.7247 -0.9169 30 1 4.1728 2.8257 -2.0556 31 1 5.2253 2.8000 1.7292 32 1 4.0282 3.9420 1.0728 33 1 6.7281 3.2749 -0.1852 34 1 5.5310 4.4170 -0.8415 35 1 7.4746 6.2564 -1.5606 36 1 9.0820 5.9385 -0.8654 37 1 7.9413 4.5961 -1.1200 38 1 8.3914 7.7321 0.7300 39 1 7.2513 7.2766 2.0188 40 1 9.9628 9.0176 3.8022 41 1 3.7755 0.2821 0.7421 42 1 3.2587 1.6712 1.7384 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000234823697.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:25:56 Heat of formation + Delta-G solvation = -99.464876 kcal Electronic energy + Delta-G solvation = -20861.312040 eV Core-core repulsion = 17647.557850 eV Total energy + Delta-G solvation = -3213.754190 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 270.173 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.89102 -40.17724 -37.97264 -36.59173 -34.77067 -33.74136 -30.82124 -29.89093 -29.14209 -27.31218 -27.02531 -25.48967 -23.76714 -22.14432 -21.67152 -19.90507 -18.70263 -18.03215 -17.93380 -17.08668 -16.98090 -16.66510 -16.16906 -15.93054 -15.64007 -15.18071 -15.15306 -14.39413 -14.18917 -14.01440 -13.82148 -13.48102 -13.43367 -13.34451 -13.13986 -12.90929 -12.68813 -12.58681 -12.50304 -12.24518 -12.22557 -12.18762 -11.94217 -11.71885 -11.66092 -10.64776 -10.60692 -10.53699 -9.41843 -9.37828 -8.22843 -6.37976 1.36379 1.40779 1.48117 1.84521 2.26971 2.40997 2.71799 3.03964 3.06713 3.56598 3.68945 3.87915 3.98338 4.02693 4.13647 4.34678 4.40655 4.43311 4.49227 4.52763 4.59179 4.65856 4.73437 4.85048 4.86767 4.89384 4.92824 4.95290 4.99741 5.01360 5.07677 5.15586 5.22592 5.55968 5.84306 5.91437 5.97234 6.05883 6.23269 6.69181 6.79790 7.27797 7.48783 8.84042 Molecular weight = 270.17amu Principal moments of inertia in cm(-1) A = 0.036660 B = 0.003205 C = 0.003086 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 763.586042 B = 8733.280829 C = 9070.803444 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.398 6.398 3 C 0.067 3.933 4 H 0.075 0.925 5 C -0.141 4.141 6 C 0.036 3.964 7 N -0.527 5.527 8 C 0.075 3.925 9 C -0.113 4.113 10 C 0.494 3.506 11 O -0.602 6.602 12 N -0.612 5.612 13 C 0.078 3.922 14 C 0.258 3.742 15 C -0.544 4.544 16 H 0.053 0.947 17 C 0.006 3.994 18 N -0.929 5.929 19 Si 0.968 3.032 20 H -0.259 1.259 21 H -0.278 1.278 22 H -0.278 1.278 23 C 0.041 3.959 24 H 0.046 0.954 25 H 0.052 0.948 26 H 0.098 0.902 27 H 0.083 0.917 28 H 0.092 0.908 29 H 0.051 0.949 30 H 0.100 0.900 31 H 0.061 0.939 32 H 0.031 0.969 33 H 0.115 0.885 34 H 0.116 0.884 35 H 0.072 0.928 36 H 0.064 0.936 37 H 0.095 0.905 38 H 0.024 0.976 39 H -0.003 1.003 40 H 0.267 0.733 41 H 0.084 0.916 42 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.933 -14.466 -13.206 24.631 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.317 6.317 3 C 0.008 3.992 4 H 0.093 0.907 5 C -0.179 4.179 6 C -0.091 4.091 7 N -0.252 5.252 8 C -0.054 4.054 9 C -0.153 4.153 10 C 0.283 3.717 11 O -0.484 6.484 12 N -0.343 5.343 13 C -0.064 4.064 14 C 0.136 3.864 15 C -0.582 4.582 16 H 0.071 0.929 17 C -0.193 4.193 18 N -0.569 5.569 19 Si 0.792 3.208 20 H -0.184 1.184 21 H -0.203 1.203 22 H -0.203 1.203 23 C -0.087 4.087 24 H 0.065 0.935 25 H 0.071 0.929 26 H 0.117 0.883 27 H 0.102 0.898 28 H 0.111 0.889 29 H 0.069 0.931 30 H 0.118 0.882 31 H 0.080 0.920 32 H 0.049 0.951 33 H 0.133 0.867 34 H 0.134 0.866 35 H 0.090 0.910 36 H 0.083 0.917 37 H 0.114 0.886 38 H 0.042 0.958 39 H 0.015 0.985 40 H 0.076 0.924 41 H 0.102 0.898 42 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -14.572 -14.649 -12.752 24.281 hybrid contribution -0.049 0.921 1.328 1.617 sum -14.621 -13.729 -11.424 23.082 Atomic orbital electron populations 1.22983 0.79478 1.03930 1.00770 1.87888 1.21424 1.27289 1.95055 1.23400 0.94423 0.84976 0.96377 0.90678 1.23143 0.98552 0.99637 0.96534 1.23176 0.94808 0.96528 0.94632 1.63593 1.34148 1.18302 1.09188 1.21865 0.96119 0.92177 0.95205 1.21497 0.99783 0.95346 0.98643 1.21386 0.79550 0.83324 0.87441 1.90627 1.62129 1.72240 1.23444 1.48209 1.35131 1.33760 1.17161 1.21950 0.99767 1.03323 0.81354 1.18753 0.92426 0.85928 0.89286 1.21686 1.16107 0.96866 1.23586 0.92891 1.25881 1.00445 0.95081 0.97849 1.70044 1.42628 1.06507 1.37726 0.85459 0.78876 0.77879 0.78559 1.18388 1.20264 1.20343 1.22824 0.90927 0.98827 0.96094 0.93524 0.92917 0.88343 0.89825 0.88939 0.93068 0.88189 0.92008 0.95072 0.86729 0.86582 0.90980 0.91702 0.88630 0.95811 0.98528 0.92368 0.89753 0.92562 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.30 10.85 113.37 1.23 1.53 16 2 O -0.40 -7.64 10.43 -148.98 -1.55 -9.19 16 3 C 0.07 1.22 3.44 31.77 0.11 1.33 16 4 H 0.08 1.25 7.83 -2.39 -0.02 1.23 16 5 C -0.14 -2.15 6.80 31.98 0.22 -1.93 16 6 C 0.04 0.62 5.78 86.78 0.50 1.13 16 7 N -0.53 -12.03 5.16 -885.53 -4.57 -16.61 16 8 C 0.07 2.13 3.85 86.30 0.33 2.46 16 9 C -0.11 -3.15 4.30 29.85 0.13 -3.02 16 10 C 0.49 20.71 7.67 87.66 0.67 21.38 16 11 O -0.60 -31.73 15.56 -3.01 -0.05 -31.77 16 12 N -0.61 -26.26 2.86 -851.12 -2.43 -28.69 16 13 C 0.08 2.31 10.24 127.77 1.31 3.61 16 14 C 0.26 14.19 5.16 85.64 0.44 14.63 16 15 C -0.54 -31.96 9.39 25.60 0.24 -31.72 16 16 H 0.05 3.07 7.81 -2.91 -0.02 3.05 16 17 C 0.01 0.37 5.46 84.65 0.46 0.83 16 18 N -0.93 -57.02 13.29 21.44 0.28 -56.74 16 19 Si 0.97 45.51 29.54 68.60 2.03 47.53 16 20 H -0.26 -11.41 7.11 99.48 0.71 -10.70 16 21 H -0.28 -12.56 7.11 99.48 0.71 -11.86 16 22 H -0.28 -13.07 7.11 99.48 0.71 -12.36 16 23 C 0.04 0.91 6.64 86.65 0.58 1.48 16 24 H 0.05 0.52 8.11 -2.39 -0.02 0.50 16 25 H 0.05 0.52 8.14 -2.39 -0.02 0.50 16 26 H 0.10 0.94 8.14 -2.39 -0.02 0.92 16 27 H 0.08 1.35 8.14 -2.39 -0.02 1.33 16 28 H 0.09 1.07 8.14 -2.38 -0.02 1.05 16 29 H 0.05 0.91 7.62 -2.39 -0.02 0.89 16 30 H 0.10 1.48 8.14 -2.38 -0.02 1.46 16 31 H 0.06 2.02 7.99 -2.39 -0.02 2.00 16 32 H 0.03 0.95 7.81 -2.39 -0.02 0.93 16 33 H 0.11 2.84 7.40 -2.39 -0.02 2.82 16 34 H 0.12 2.52 7.46 -2.39 -0.02 2.50 16 35 H 0.07 1.74 8.14 -2.39 -0.02 1.72 16 36 H 0.06 2.04 8.07 -2.39 -0.02 2.02 16 37 H 0.10 2.13 6.44 -2.39 -0.02 2.12 16 38 H 0.02 1.32 8.07 -2.39 -0.02 1.30 16 39 H 0.00 -0.22 7.42 -2.39 -0.02 -0.23 16 40 H 0.27 15.38 8.31 -92.71 -0.77 14.61 16 41 H 0.08 1.94 8.06 -2.39 -0.02 1.92 16 42 H 0.06 1.30 7.55 -2.39 -0.02 1.28 16 Total: -1.00 -75.64 342.53 0.90 -74.74 By element: Atomic # 1 Polarization: 8.03 SS G_CDS: 0.97 Total: 9.00 kcal Atomic # 6 Polarization: 5.50 SS G_CDS: 6.22 Total: 11.72 kcal Atomic # 7 Polarization: -95.31 SS G_CDS: -6.72 Total: -102.03 kcal Atomic # 8 Polarization: -39.36 SS G_CDS: -1.60 Total: -40.96 kcal Atomic # 14 Polarization: 45.51 SS G_CDS: 2.03 Total: 47.53 kcal Total: -75.64 0.90 -74.74 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000234823697.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.726 kcal (2) G-P(sol) polarization free energy of solvation -75.639 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.365 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.900 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.739 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.465 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds