Wall clock time and date at job start Mon Mar 30 2020 00:53:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46499 * 109.47276 * 2 1 4 4 C 1.46499 * 120.00136 * 269.99459 * 3 2 1 5 5 C 1.50697 * 109.47293 * 270.00491 * 4 3 2 6 6 H 1.07997 * 120.00010 * 359.97438 * 5 4 3 7 7 C 1.37875 * 120.00091 * 180.02562 * 5 4 3 8 8 N 1.31510 * 120.00242 * 179.97438 * 7 5 4 9 9 Si 1.86807 * 119.99879 * 359.97438 * 7 5 4 10 10 H 1.48499 * 109.46938 * 90.00404 * 9 7 5 11 11 H 1.48499 * 109.47143 * 210.00686 * 9 7 5 12 12 H 1.48496 * 109.47136 * 330.00589 * 9 7 5 13 13 C 1.34784 * 119.99971 * 89.99654 * 3 2 1 14 14 O 1.21283 * 119.99649 * 179.97438 * 13 3 2 15 15 C 1.50697 * 119.99774 * 359.72768 * 13 3 2 16 16 N 1.46904 * 109.46892 * 179.97438 * 15 13 3 17 17 C 1.47450 * 111.00019 * 69.87032 * 16 15 13 18 18 C 1.54318 * 107.23301 * 123.25482 * 17 16 15 19 19 C 1.55147 * 103.01726 * 22.28850 * 18 17 16 20 20 C 1.47841 * 110.99979 * 190.71206 * 16 15 13 21 21 H 1.08996 * 110.37845 * 332.46939 * 20 16 15 22 22 C 1.52998 * 110.37186 * 94.80885 * 20 16 15 23 23 O 1.42902 * 109.47470 * 65.00052 * 22 20 16 24 24 H 1.09007 * 109.46853 * 59.99785 * 1 2 3 25 25 H 1.08996 * 109.47549 * 179.97438 * 1 2 3 26 26 H 1.08998 * 109.47074 * 300.00425 * 1 2 3 27 27 H 1.08998 * 109.47074 * 239.99575 * 2 1 3 28 28 H 1.09008 * 109.46412 * 119.99581 * 2 1 3 29 29 H 1.08997 * 109.46865 * 30.00228 * 4 3 2 30 30 H 1.08998 * 109.47058 * 149.99741 * 4 3 2 31 31 H 0.96997 * 120.00230 * 179.97438 * 8 7 5 32 32 H 1.09001 * 109.46809 * 299.99238 * 15 13 3 33 33 H 1.08993 * 109.47525 * 59.99679 * 15 13 3 34 34 H 1.09000 * 109.89040 * 242.66590 * 17 16 15 35 35 H 1.09007 * 109.88594 * 3.69314 * 17 16 15 36 36 H 1.08997 * 110.70412 * 140.66879 * 18 17 16 37 37 H 1.08996 * 110.70743 * 263.73118 * 18 17 16 38 38 H 1.08995 * 110.99096 * 82.43747 * 19 18 17 39 39 H 1.08996 * 110.98573 * 206.21467 * 19 18 17 40 40 H 1.09001 * 109.47442 * 184.99806 * 22 20 16 41 41 H 1.09001 * 109.47285 * 305.00184 * 22 20 16 42 42 H 0.96698 * 114.00422 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2627 2.0718 -1.2687 5 6 3.6859 1.8349 -1.7037 6 1 4.3429 1.2307 -1.0957 7 6 4.1496 2.3903 -2.8773 8 7 5.3918 2.1840 -3.2567 9 14 3.0134 3.4359 -3.9286 10 1 3.1162 4.8560 -3.5068 11 1 3.4069 3.3136 -5.3553 12 1 1.6138 2.9694 -3.7595 13 6 2.2429 2.0166 1.1673 14 8 2.6477 3.1599 1.1672 15 6 1.9858 1.3082 2.4723 16 7 2.3058 2.2076 3.5889 17 6 1.3265 3.3062 3.6798 18 6 0.7197 3.2615 5.0980 19 6 1.7963 2.4996 5.9149 20 6 2.3128 1.4758 4.8734 21 1 1.6455 0.6154 4.8237 22 6 3.7336 1.0297 5.2245 23 8 4.5515 2.1793 5.4515 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3633 0.5139 0.8899 27 1 1.8933 -0.5139 -0.8899 28 1 1.8932 -0.5138 0.8901 29 1 1.5819 1.6877 -2.0283 30 1 2.0957 3.1410 -1.1384 31 1 5.7179 2.5744 -4.0825 32 1 0.9365 1.0186 2.5279 33 1 2.6121 0.4182 2.5322 34 1 1.8255 4.2620 3.5199 35 1 0.5434 3.1675 2.9343 36 1 0.5804 4.2692 5.4895 37 1 -0.2241 2.7163 5.0964 38 1 2.5943 3.1713 6.2313 39 1 1.3510 1.9946 6.7721 40 1 3.7099 0.4170 6.1257 41 1 4.1458 0.4476 4.4002 42 1 5.4678 1.9712 5.6797 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000303253943.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:53:45 Heat of formation + Delta-G solvation = -71.599348 kcal Electronic energy + Delta-G solvation = -21919.967337 eV Core-core repulsion = 18707.421487 eV Total energy + Delta-G solvation = -3212.545850 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 270.173 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -39.77602 -38.37059 -36.13388 -35.23373 -32.77817 -31.97684 -30.31904 -30.13463 -28.15591 -26.00976 -24.80750 -22.95035 -22.15662 -21.06252 -19.96561 -18.24105 -17.44144 -16.86616 -16.41049 -15.99557 -15.73500 -14.95844 -14.61504 -14.51543 -13.96155 -13.52463 -13.45368 -13.30773 -12.91565 -12.80553 -12.46951 -12.36658 -12.15898 -11.79954 -11.73568 -11.38984 -11.21670 -11.12646 -10.92541 -10.70414 -10.67763 -10.59813 -10.45427 -10.10821 -9.87030 -9.48308 -8.89142 -8.54067 -8.05814 -7.63280 -6.03804 -4.01853 3.32200 3.38006 3.40192 3.45323 3.65348 4.15686 4.30226 4.43865 4.62118 4.75939 4.98174 5.10142 5.22222 5.24913 5.29871 5.29921 5.37231 5.39179 5.48232 5.55884 5.58544 5.68721 5.74221 5.82669 5.85514 5.94302 5.99308 6.15803 6.25191 6.39362 6.41414 6.74138 6.98635 7.14071 7.15913 7.44883 7.67136 7.76702 8.34998 8.53209 8.99786 9.12526 9.57022 11.09823 Molecular weight = 270.17amu Principal moments of inertia in cm(-1) A = 0.022290 B = 0.005028 C = 0.004748 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1255.873340 B = 5567.472442 C = 5895.238225 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.107 3.893 3 N -0.598 5.598 4 C 0.218 3.782 5 C -0.526 4.526 6 H 0.074 0.926 7 C 0.072 3.928 8 N -0.899 5.899 9 Si 0.876 3.124 10 H -0.274 1.274 11 H -0.285 1.285 12 H -0.267 1.267 13 C 0.509 3.491 14 O -0.518 6.518 15 C 0.033 3.967 16 N -0.496 5.496 17 C 0.057 3.943 18 C -0.145 4.145 19 C -0.118 4.118 20 C 0.069 3.931 21 H 0.064 0.936 22 C 0.093 3.907 23 O -0.555 6.555 24 H 0.059 0.941 25 H 0.061 0.939 26 H 0.049 0.951 27 H 0.084 0.916 28 H 0.065 0.935 29 H 0.028 0.972 30 H 0.035 0.965 31 H 0.264 0.736 32 H 0.056 0.944 33 H 0.094 0.906 34 H 0.084 0.916 35 H 0.049 0.951 36 H 0.073 0.927 37 H 0.061 0.939 38 H 0.089 0.911 39 H 0.067 0.933 40 H 0.043 0.957 41 H 0.046 0.954 42 H 0.372 0.628 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.385 -5.806 16.981 20.734 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.017 4.017 3 N -0.331 5.331 4 C 0.098 3.902 5 C -0.564 4.564 6 H 0.092 0.908 7 C -0.130 4.130 8 N -0.537 5.537 9 Si 0.703 3.297 10 H -0.199 1.199 11 H -0.211 1.211 12 H -0.191 1.191 13 C 0.294 3.706 14 O -0.393 6.393 15 C -0.099 4.099 16 N -0.221 5.221 17 C -0.070 4.070 18 C -0.183 4.183 19 C -0.156 4.156 20 C -0.040 4.040 21 H 0.082 0.918 22 C 0.015 3.985 23 O -0.359 6.359 24 H 0.078 0.922 25 H 0.080 0.920 26 H 0.068 0.932 27 H 0.102 0.898 28 H 0.083 0.917 29 H 0.046 0.954 30 H 0.053 0.947 31 H 0.074 0.926 32 H 0.073 0.927 33 H 0.112 0.888 34 H 0.102 0.898 35 H 0.068 0.932 36 H 0.092 0.908 37 H 0.080 0.920 38 H 0.108 0.892 39 H 0.086 0.914 40 H 0.061 0.939 41 H 0.064 0.936 42 H 0.218 0.782 Dipole moment (debyes) X Y Z Total from point charges -10.105 -4.621 16.563 19.945 hybrid contribution -0.723 -0.355 -0.558 0.980 sum -10.829 -4.976 16.006 19.955 Atomic orbital electron populations 1.22237 0.96965 1.01457 1.02101 1.21405 0.93222 0.84125 1.02941 1.47945 1.64847 1.13318 1.06994 1.19599 0.97203 0.93317 0.80109 1.21346 0.95382 1.32717 1.06979 0.90800 1.24855 0.94970 0.95817 0.97384 1.69897 1.15131 1.45145 1.23572 0.86854 0.81447 0.81683 0.79709 1.19925 1.21128 1.19149 1.20145 0.78660 0.87165 0.84610 1.90674 1.43972 1.17876 1.86793 1.22277 0.99899 0.96358 0.91330 1.63130 1.48965 1.09093 1.00900 1.22718 0.92978 0.96464 0.94866 1.22843 0.98002 1.01100 0.96375 1.22620 0.98487 0.97935 0.96554 1.22663 0.94967 0.96330 0.89994 0.91845 1.21990 0.90941 0.87508 0.98088 1.86579 1.24357 1.32156 1.92781 0.92209 0.92045 0.93223 0.89755 0.91684 0.95439 0.94731 0.92634 0.92664 0.88814 0.89806 0.93235 0.90820 0.91989 0.89225 0.91424 0.93883 0.93580 0.78182 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.14 10.24 37.16 0.38 -1.76 16 2 C 0.11 1.68 5.93 -4.04 -0.02 1.66 16 3 N -0.60 -12.53 2.46 -175.06 -0.43 -12.96 16 4 C 0.22 5.46 4.23 -5.20 -0.02 5.44 16 5 C -0.53 -15.45 9.94 -34.44 -0.34 -15.79 16 6 H 0.07 2.38 8.06 -52.49 -0.42 1.96 16 7 C 0.07 2.14 5.47 -17.82 -0.10 2.04 16 8 N -0.90 -28.23 13.96 55.43 0.77 -27.46 16 9 Si 0.88 22.02 27.47 -169.99 -4.67 17.36 16 10 H -0.27 -6.95 7.11 56.52 0.40 -6.55 16 11 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 12 H -0.27 -6.30 6.54 56.52 0.37 -5.93 16 13 C 0.51 10.76 7.32 -10.98 -0.08 10.68 16 14 O -0.52 -13.35 15.12 5.56 0.08 -13.26 16 15 C 0.03 0.51 3.59 -4.98 -0.02 0.50 16 16 N -0.50 -7.88 4.47 -224.81 -1.01 -8.88 16 17 C 0.06 0.87 5.64 -2.83 -0.02 0.85 16 18 C -0.14 -1.63 6.94 -24.90 -0.17 -1.80 16 19 C -0.12 -1.29 6.43 -24.59 -0.16 -1.45 16 20 C 0.07 0.83 2.82 -66.19 -0.19 0.64 16 21 H 0.06 0.65 7.81 -51.93 -0.41 0.24 16 22 C 0.09 1.05 7.02 37.16 0.26 1.31 16 23 O -0.55 -7.14 12.40 -35.23 -0.44 -7.58 16 24 H 0.06 0.82 8.14 -51.92 -0.42 0.40 16 25 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 26 H 0.05 0.60 7.20 -51.93 -0.37 0.22 16 27 H 0.08 1.39 8.07 -51.93 -0.42 0.97 16 28 H 0.06 0.86 6.44 -51.92 -0.33 0.52 16 29 H 0.03 0.65 7.13 -51.93 -0.37 0.28 16 30 H 0.03 0.93 6.85 -51.93 -0.36 0.57 16 31 H 0.26 7.73 8.31 -40.82 -0.34 7.40 16 32 H 0.06 0.73 6.99 -51.93 -0.36 0.37 16 33 H 0.09 1.34 7.32 -51.93 -0.38 0.96 16 34 H 0.08 1.46 8.14 -51.93 -0.42 1.04 16 35 H 0.05 0.76 7.31 -51.93 -0.38 0.38 16 36 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 37 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 38 H 0.09 1.12 7.05 -51.93 -0.37 0.76 16 39 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 40 H 0.04 0.37 8.14 -51.93 -0.42 -0.06 16 41 H 0.05 0.55 8.14 -51.93 -0.42 0.12 16 42 H 0.37 3.15 9.12 45.56 0.42 3.57 16 LS Contribution 334.99 15.07 5.05 5.05 Total: -1.00 -36.48 334.99 -7.42 -43.90 By element: Atomic # 1 Polarization: 7.82 SS G_CDS: -6.30 Total: 1.52 kcal Atomic # 6 Polarization: 2.79 SS G_CDS: -0.48 Total: 2.32 kcal Atomic # 7 Polarization: -48.64 SS G_CDS: -0.66 Total: -49.30 kcal Atomic # 8 Polarization: -20.48 SS G_CDS: -0.35 Total: -20.84 kcal Atomic # 14 Polarization: 22.02 SS G_CDS: -4.67 Total: 17.36 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -36.48 -7.42 -43.90 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000303253943.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.703 kcal (2) G-P(sol) polarization free energy of solvation -36.479 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.182 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.417 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.897 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.599 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds