Wall clock time and date at job start Mon Mar 30 2020 00:53:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46499 * 109.47276 * 2 1 4 4 C 1.46499 * 120.00136 * 269.99459 * 3 2 1 5 5 C 1.50697 * 109.47293 * 270.00491 * 4 3 2 6 6 H 1.07997 * 120.00010 * 359.97438 * 5 4 3 7 7 C 1.37875 * 120.00091 * 180.02562 * 5 4 3 8 8 N 1.31510 * 120.00242 * 179.97438 * 7 5 4 9 9 Si 1.86807 * 119.99879 * 359.97438 * 7 5 4 10 10 H 1.48499 * 109.46938 * 90.00404 * 9 7 5 11 11 H 1.48499 * 109.47143 * 210.00686 * 9 7 5 12 12 H 1.48496 * 109.47136 * 330.00589 * 9 7 5 13 13 C 1.34784 * 119.99971 * 89.99654 * 3 2 1 14 14 O 1.21283 * 119.99649 * 179.97438 * 13 3 2 15 15 C 1.50697 * 119.99774 * 359.72768 * 13 3 2 16 16 N 1.46904 * 109.46892 * 179.97438 * 15 13 3 17 17 C 1.47450 * 111.00019 * 69.87032 * 16 15 13 18 18 C 1.54318 * 107.23301 * 123.25482 * 17 16 15 19 19 C 1.55147 * 103.01726 * 22.28850 * 18 17 16 20 20 C 1.47841 * 110.99979 * 190.71206 * 16 15 13 21 21 H 1.08996 * 110.37845 * 332.46939 * 20 16 15 22 22 C 1.52998 * 110.37186 * 94.80885 * 20 16 15 23 23 O 1.42902 * 109.47470 * 65.00052 * 22 20 16 24 24 H 1.09007 * 109.46853 * 59.99785 * 1 2 3 25 25 H 1.08996 * 109.47549 * 179.97438 * 1 2 3 26 26 H 1.08998 * 109.47074 * 300.00425 * 1 2 3 27 27 H 1.08998 * 109.47074 * 239.99575 * 2 1 3 28 28 H 1.09008 * 109.46412 * 119.99581 * 2 1 3 29 29 H 1.08997 * 109.46865 * 30.00228 * 4 3 2 30 30 H 1.08998 * 109.47058 * 149.99741 * 4 3 2 31 31 H 0.96997 * 120.00230 * 179.97438 * 8 7 5 32 32 H 1.09001 * 109.46809 * 299.99238 * 15 13 3 33 33 H 1.08993 * 109.47525 * 59.99679 * 15 13 3 34 34 H 1.09000 * 109.89040 * 242.66590 * 17 16 15 35 35 H 1.09007 * 109.88594 * 3.69314 * 17 16 15 36 36 H 1.08997 * 110.70412 * 140.66879 * 18 17 16 37 37 H 1.08996 * 110.70743 * 263.73118 * 18 17 16 38 38 H 1.08995 * 110.99096 * 82.43747 * 19 18 17 39 39 H 1.08996 * 110.98573 * 206.21467 * 19 18 17 40 40 H 1.09001 * 109.47442 * 184.99806 * 22 20 16 41 41 H 1.09001 * 109.47285 * 305.00184 * 22 20 16 42 42 H 0.96698 * 114.00422 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2627 2.0718 -1.2687 5 6 3.6859 1.8349 -1.7037 6 1 4.3429 1.2307 -1.0957 7 6 4.1496 2.3903 -2.8773 8 7 5.3918 2.1840 -3.2567 9 14 3.0134 3.4359 -3.9286 10 1 3.1162 4.8560 -3.5068 11 1 3.4069 3.3136 -5.3553 12 1 1.6138 2.9694 -3.7595 13 6 2.2429 2.0166 1.1673 14 8 2.6477 3.1599 1.1672 15 6 1.9858 1.3082 2.4723 16 7 2.3058 2.2076 3.5889 17 6 1.3265 3.3062 3.6798 18 6 0.7197 3.2615 5.0980 19 6 1.7963 2.4996 5.9149 20 6 2.3128 1.4758 4.8734 21 1 1.6455 0.6154 4.8237 22 6 3.7336 1.0297 5.2245 23 8 4.5515 2.1793 5.4515 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3633 0.5139 0.8899 27 1 1.8933 -0.5139 -0.8899 28 1 1.8932 -0.5138 0.8901 29 1 1.5819 1.6877 -2.0283 30 1 2.0957 3.1410 -1.1384 31 1 5.7179 2.5744 -4.0825 32 1 0.9365 1.0186 2.5279 33 1 2.6121 0.4182 2.5322 34 1 1.8255 4.2620 3.5199 35 1 0.5434 3.1675 2.9343 36 1 0.5804 4.2692 5.4895 37 1 -0.2241 2.7163 5.0964 38 1 2.5943 3.1713 6.2313 39 1 1.3510 1.9946 6.7721 40 1 3.7099 0.4170 6.1257 41 1 4.1458 0.4476 4.4002 42 1 5.4678 1.9712 5.6797 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000303253943.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:53:44 Heat of formation + Delta-G solvation = -101.396831 kcal Electronic energy + Delta-G solvation = -21921.259453 eV Core-core repulsion = 18707.421487 eV Total energy + Delta-G solvation = -3213.837966 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 270.173 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.11931 -39.66835 -37.16022 -36.82616 -34.89149 -33.21928 -31.81508 -31.11304 -29.86189 -27.44269 -25.82465 -24.41580 -23.85662 -22.10368 -20.95972 -19.80004 -19.10178 -18.39926 -17.86349 -17.25865 -17.05065 -16.46181 -16.14888 -15.68828 -15.38630 -14.88651 -14.71461 -14.52206 -14.30263 -14.10343 -13.94472 -13.70864 -13.46455 -13.27389 -13.10228 -12.87209 -12.53748 -12.40239 -12.34350 -12.07816 -12.02097 -11.84664 -11.74843 -11.57336 -11.55428 -10.84300 -10.75606 -10.55546 -9.40332 -9.15504 -8.34959 -6.39613 1.29984 1.35027 1.43016 1.84965 2.22742 2.29726 2.98639 3.00461 3.47784 3.60513 3.78927 3.93223 4.06176 4.08343 4.23719 4.32233 4.36526 4.42415 4.46418 4.57300 4.61229 4.63354 4.75911 4.80055 4.90007 4.95313 4.99065 4.99961 5.00354 5.06972 5.19855 5.37130 5.45621 5.46711 5.67166 6.02150 6.13541 6.25835 6.61496 6.76550 7.04888 7.21629 7.50640 8.82335 Molecular weight = 270.17amu Principal moments of inertia in cm(-1) A = 0.022290 B = 0.005028 C = 0.004748 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1255.873340 B = 5567.472442 C = 5895.238225 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.098 3.902 3 N -0.605 5.605 4 C 0.228 3.772 5 C -0.535 4.535 6 H 0.026 0.974 7 C 0.010 3.990 8 N -0.946 5.946 9 Si 0.948 3.052 10 H -0.279 1.279 11 H -0.272 1.272 12 H -0.238 1.238 13 C 0.496 3.504 14 O -0.579 6.579 15 C 0.049 3.951 16 N -0.531 5.531 17 C 0.057 3.943 18 C -0.134 4.134 19 C -0.112 4.112 20 C 0.064 3.936 21 H 0.094 0.906 22 C 0.089 3.911 23 O -0.583 6.583 24 H 0.045 0.955 25 H 0.096 0.904 26 H 0.059 0.941 27 H 0.071 0.929 28 H 0.094 0.906 29 H 0.048 0.952 30 H 0.013 0.987 31 H 0.268 0.732 32 H 0.091 0.909 33 H 0.111 0.889 34 H 0.042 0.958 35 H 0.041 0.959 36 H 0.078 0.922 37 H 0.086 0.914 38 H 0.067 0.933 39 H 0.100 0.900 40 H 0.079 0.921 41 H 0.035 0.965 42 H 0.387 0.613 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.296 -7.453 18.343 23.850 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.024 4.024 3 N -0.337 5.337 4 C 0.105 3.895 5 C -0.573 4.573 6 H 0.045 0.955 7 C -0.187 4.187 8 N -0.586 5.586 9 Si 0.771 3.229 10 H -0.204 1.204 11 H -0.197 1.197 12 H -0.161 1.161 13 C 0.285 3.715 14 O -0.458 6.458 15 C -0.082 4.082 16 N -0.256 5.256 17 C -0.071 4.071 18 C -0.172 4.172 19 C -0.149 4.149 20 C -0.043 4.043 21 H 0.112 0.888 22 C 0.010 3.990 23 O -0.390 6.390 24 H 0.064 0.936 25 H 0.114 0.886 26 H 0.078 0.922 27 H 0.090 0.910 28 H 0.113 0.887 29 H 0.066 0.934 30 H 0.031 0.969 31 H 0.077 0.923 32 H 0.108 0.892 33 H 0.129 0.871 34 H 0.060 0.940 35 H 0.060 0.940 36 H 0.097 0.903 37 H 0.105 0.895 38 H 0.086 0.914 39 H 0.119 0.881 40 H 0.096 0.904 41 H 0.053 0.947 42 H 0.236 0.764 Dipole moment (debyes) X Y Z Total from point charges -13.037 -6.335 17.953 23.074 hybrid contribution 0.309 0.107 -0.931 0.987 sum -12.728 -6.228 17.022 22.148 Atomic orbital electron populations 1.22149 0.93936 1.03665 1.01927 1.21763 0.95622 0.81144 1.03855 1.48089 1.64656 1.15255 1.05687 1.19232 0.94703 0.92805 0.82711 1.21572 0.97119 1.32020 1.06604 0.95531 1.25857 0.96734 0.97163 0.98978 1.70049 1.17410 1.46649 1.24515 0.85711 0.80460 0.78893 0.77838 1.20437 1.19728 1.16139 1.21258 0.77154 0.86763 0.86358 1.90639 1.46652 1.20685 1.87800 1.22160 1.02194 0.95761 0.88117 1.62993 1.49918 1.10069 1.02640 1.22593 0.92396 0.94747 0.97348 1.22793 0.98815 1.02034 0.93547 1.22590 0.97724 0.97434 0.97202 1.22898 0.96103 0.97212 0.88121 0.88828 1.22160 0.90330 0.87189 0.99277 1.86541 1.25842 1.33688 1.92962 0.93589 0.88561 0.92220 0.90999 0.88748 0.93424 0.96889 0.92275 0.89164 0.87101 0.93959 0.94001 0.90350 0.89509 0.91423 0.88146 0.90354 0.94705 0.76446 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.46 10.24 71.98 0.74 -2.72 16 2 C 0.10 2.89 5.93 86.38 0.51 3.41 16 3 N -0.60 -25.29 2.46 -826.16 -2.03 -27.32 16 4 C 0.23 11.55 4.23 85.63 0.36 11.91 16 5 C -0.53 -32.61 9.94 25.60 0.25 -32.36 16 6 H 0.03 1.81 8.06 -2.91 -0.02 1.79 16 7 C 0.01 0.64 5.47 84.65 0.46 1.10 16 8 N -0.95 -61.41 13.96 21.45 0.30 -61.11 16 9 Si 0.95 45.91 27.47 68.60 1.88 47.79 16 10 H -0.28 -13.66 7.11 99.48 0.71 -12.95 16 11 H -0.27 -12.52 7.11 99.48 0.71 -11.81 16 12 H -0.24 -10.35 6.54 99.48 0.65 -9.70 16 13 C 0.50 21.21 7.32 87.65 0.64 21.85 16 14 O -0.58 -31.22 15.12 -3.04 -0.05 -31.27 16 15 C 0.05 1.44 3.59 85.56 0.31 1.74 16 16 N -0.53 -16.37 4.47 -865.17 -3.87 -20.24 16 17 C 0.06 1.72 5.64 86.64 0.49 2.21 16 18 C -0.13 -2.70 6.94 31.78 0.22 -2.48 16 19 C -0.11 -2.14 6.43 31.98 0.21 -1.93 16 20 C 0.06 1.36 2.82 45.39 0.13 1.49 16 21 H 0.09 1.44 7.81 -2.39 -0.02 1.42 16 22 C 0.09 1.81 7.02 71.98 0.51 2.32 16 23 O -0.58 -14.72 12.40 -148.98 -1.85 -16.57 16 24 H 0.04 1.14 8.14 -2.38 -0.02 1.12 16 25 H 0.10 1.47 8.14 -2.39 -0.02 1.45 16 26 H 0.06 1.19 7.20 -2.39 -0.02 1.18 16 27 H 0.07 2.29 8.07 -2.39 -0.02 2.27 16 28 H 0.09 2.21 6.44 -2.38 -0.02 2.19 16 29 H 0.05 2.21 7.13 -2.39 -0.02 2.20 16 30 H 0.01 0.72 6.85 -2.39 -0.02 0.70 16 31 H 0.27 16.14 8.31 -92.71 -0.77 15.37 16 32 H 0.09 2.04 6.99 -2.39 -0.02 2.02 16 33 H 0.11 2.88 7.32 -2.39 -0.02 2.86 16 34 H 0.04 1.58 8.14 -2.39 -0.02 1.56 16 35 H 0.04 1.28 7.31 -2.38 -0.02 1.26 16 36 H 0.08 1.50 8.14 -2.39 -0.02 1.48 16 37 H 0.09 1.36 8.14 -2.39 -0.02 1.34 16 38 H 0.07 1.61 7.05 -2.39 -0.02 1.59 16 39 H 0.10 1.29 8.14 -2.39 -0.02 1.27 16 40 H 0.08 1.05 8.14 -2.39 -0.02 1.03 16 41 H 0.03 0.77 8.14 -2.39 -0.02 0.75 16 42 H 0.39 6.45 9.12 -74.06 -0.68 5.77 16 Total: -1.00 -85.50 334.99 -0.52 -86.02 By element: Atomic # 1 Polarization: 15.90 SS G_CDS: 0.27 Total: 16.17 kcal Atomic # 6 Polarization: 1.71 SS G_CDS: 4.83 Total: 6.54 kcal Atomic # 7 Polarization: -103.07 SS G_CDS: -5.60 Total: -108.68 kcal Atomic # 8 Polarization: -45.94 SS G_CDS: -1.89 Total: -47.84 kcal Atomic # 14 Polarization: 45.91 SS G_CDS: 1.88 Total: 47.79 kcal Total: -85.50 -0.52 -86.02 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000303253943.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.381 kcal (2) G-P(sol) polarization free energy of solvation -85.498 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.879 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.518 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.015 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.397 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds