Wall clock time and date at job start Mon Mar 30 2020 01:22:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46902 * 1 3 3 C 1.46894 * 110.99935 * 2 1 4 4 C 1.50703 * 109.47137 * 66.04780 * 3 2 1 5 5 O 1.21293 * 120.00015 * 359.97438 * 4 3 2 6 6 N 1.34773 * 119.99822 * 180.27547 * 4 3 2 7 7 C 1.37109 * 120.00080 * 179.72097 * 6 4 3 8 8 H 1.07996 * 119.99469 * 0.02562 * 7 6 4 9 9 C 1.38942 * 120.00061 * 179.97438 * 7 6 4 10 10 N 1.31418 * 120.00256 * 0.02562 * 9 7 6 11 11 Si 1.86805 * 119.99895 * 180.02562 * 9 7 6 12 12 H 1.48506 * 109.46730 * 90.00428 * 11 9 7 13 13 H 1.48493 * 109.47191 * 210.00013 * 11 9 7 14 14 H 1.48496 * 109.47343 * 330.00311 * 11 9 7 15 15 C 1.46894 * 110.99979 * 236.04530 * 2 1 3 16 16 C 1.53002 * 109.47181 * 199.86807 * 15 2 1 17 17 H 1.08997 * 109.47065 * 305.26501 * 16 15 2 18 18 C 1.52999 * 109.47205 * 65.26228 * 16 15 2 19 19 C 1.53002 * 109.47205 * 179.97438 * 18 16 15 20 20 C 1.52998 * 109.46873 * 300.00302 * 19 18 16 21 21 C 1.52999 * 109.47452 * 59.99849 * 20 19 18 22 22 C 1.52998 * 109.46873 * 185.26530 * 16 15 2 23 23 H 1.09001 * 109.47698 * 60.00180 * 22 16 15 24 24 O 1.42895 * 109.47469 * 299.99579 * 22 16 15 25 25 H 1.08999 * 109.47283 * 54.65362 * 1 2 3 26 26 H 1.09003 * 109.47447 * 174.65801 * 1 2 3 27 27 H 1.08999 * 109.47422 * 294.65867 * 1 2 3 28 28 H 1.09001 * 109.47359 * 306.04761 * 3 2 1 29 29 H 1.09000 * 109.47059 * 186.04606 * 3 2 1 30 30 H 0.97005 * 120.00523 * 359.72365 * 6 4 3 31 31 H 0.97002 * 120.00027 * 179.97438 * 10 9 7 32 32 H 1.09006 * 109.47177 * 319.86663 * 15 2 1 33 33 H 1.08998 * 109.47062 * 79.86640 * 15 2 1 34 34 H 1.08998 * 109.47551 * 300.00356 * 18 16 15 35 35 H 1.09004 * 109.46519 * 60.00128 * 18 16 15 36 36 H 1.09004 * 109.46982 * 59.99869 * 19 18 16 37 37 H 1.08992 * 109.47019 * 179.97438 * 19 18 16 38 38 H 1.09000 * 109.46789 * 179.97438 * 20 19 18 39 39 H 1.08999 * 109.47663 * 299.99529 * 20 19 18 40 40 H 1.09004 * 109.47257 * 59.99910 * 21 20 19 41 41 H 1.08998 * 109.47551 * 179.97438 * 21 20 19 42 42 H 0.96695 * 114.00674 * 180.02562 * 24 22 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.6369 2.0471 1.2985 5 8 1.0047 1.4455 2.1408 6 7 2.0137 3.3218 1.5212 7 6 1.6826 3.9384 2.7002 8 1 1.1203 3.4025 3.4505 9 6 2.0714 5.2524 2.9301 10 7 2.7561 5.9043 2.0172 11 14 1.6210 6.0923 4.5367 12 1 2.6964 5.8613 5.5344 13 1 1.4649 7.5509 4.3060 14 1 0.3437 5.5324 5.0469 15 6 1.9954 -0.7660 -1.1375 16 6 3.4447 -1.1670 -0.8554 17 1 4.0283 -0.2774 -0.6184 18 6 3.4849 -2.1339 0.3297 19 6 4.9342 -2.5355 0.6114 20 6 5.5235 -3.2184 -0.6244 21 6 5.4834 -2.2515 -1.8094 22 6 4.0347 -1.8497 -2.0910 23 1 4.0062 -1.1609 -2.9352 24 8 3.2697 -3.0160 -2.4017 25 1 -0.3634 0.5945 -0.8382 26 1 -0.3634 -1.0232 -0.0957 27 1 -0.3634 0.4287 0.9339 28 1 1.5611 1.9273 -0.8309 29 1 3.0797 1.3444 -0.1082 30 1 2.5190 3.8031 0.8475 31 1 3.0272 6.8218 2.1776 32 1 1.3921 -1.6622 -1.2825 33 1 1.9568 -0.1525 -2.0376 34 1 3.0646 -1.6476 1.2099 35 1 2.9013 -3.0235 0.0926 36 1 5.5181 -1.6460 0.8482 37 1 4.9628 -3.2239 1.4559 38 1 6.5561 -3.5041 -0.4238 39 1 4.9397 -4.1078 -0.8612 40 1 6.0673 -1.3620 -1.5726 41 1 5.9036 -2.7378 -2.6897 42 1 3.5878 -3.5004 -3.1758 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000305815094.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:22:57 Heat of formation + Delta-G solvation = -99.564026 kcal Electronic energy + Delta-G solvation = -21588.293725 eV Core-core repulsion = 18374.535236 eV Total energy + Delta-G solvation = -3213.758489 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 270.173 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -39.59624 -38.33947 -36.22205 -34.97138 -33.80679 -31.43606 -31.18629 -29.86751 -27.92768 -26.11677 -24.61719 -22.82784 -22.20482 -20.68778 -19.73445 -18.96975 -17.78093 -16.91713 -16.10851 -15.73802 -15.24696 -14.86830 -14.54082 -14.34804 -14.08584 -13.75041 -13.56564 -13.38089 -12.98826 -12.81887 -12.28744 -12.12690 -11.92068 -11.76192 -11.48770 -11.41073 -11.24476 -11.15110 -10.95684 -10.76183 -10.57873 -10.36883 -10.30311 -10.17656 -9.86961 -9.71480 -9.43308 -8.35665 -7.92568 -7.71769 -6.37769 -3.78295 3.20481 3.28690 3.34682 3.96527 4.07785 4.19142 4.29625 4.68370 4.74903 4.82856 5.09664 5.15290 5.26288 5.29371 5.38428 5.44589 5.51821 5.56038 5.64422 5.72018 5.79397 5.84187 5.90928 5.97167 6.02226 6.10204 6.11788 6.20008 6.25237 6.33281 6.37114 6.61173 6.66448 6.72370 7.41109 7.53863 7.57047 7.59249 8.11424 8.67104 9.22814 9.59743 10.12264 10.80203 Molecular weight = 270.17amu Principal moments of inertia in cm(-1) A = 0.027646 B = 0.003988 C = 0.003801 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1012.556986 B = 7019.728058 C = 7363.891100 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 N -0.517 5.517 3 C 0.044 3.956 4 C 0.446 3.554 5 O -0.577 6.577 6 N -0.567 5.567 7 C -0.297 4.297 8 H 0.103 0.897 9 C 0.022 3.978 10 N -0.904 5.904 11 Si 0.929 3.071 12 H -0.278 1.278 13 H -0.284 1.284 14 H -0.270 1.270 15 C 0.064 3.936 16 C -0.073 4.073 17 H 0.080 0.920 18 C -0.101 4.101 19 C -0.122 4.122 20 C -0.113 4.113 21 C -0.151 4.151 22 C 0.110 3.890 23 H 0.050 0.950 24 O -0.559 6.559 25 H 0.013 0.987 26 H 0.057 0.943 27 H 0.095 0.905 28 H 0.045 0.955 29 H 0.086 0.914 30 H 0.391 0.609 31 H 0.271 0.729 32 H 0.079 0.921 33 H 0.027 0.973 34 H 0.079 0.921 35 H 0.063 0.937 36 H 0.058 0.942 37 H 0.059 0.941 38 H 0.054 0.946 39 H 0.065 0.935 40 H 0.070 0.930 41 H 0.060 0.940 42 H 0.370 0.630 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.996 -14.253 -10.869 18.608 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 N -0.240 5.240 3 C -0.087 4.087 4 C 0.232 3.768 5 O -0.460 6.460 6 N -0.204 5.204 7 C -0.427 4.427 8 H 0.120 0.880 9 C -0.180 4.180 10 N -0.545 5.545 11 Si 0.756 3.244 12 H -0.204 1.204 13 H -0.210 1.210 14 H -0.194 1.194 15 C -0.065 4.065 16 C -0.092 4.092 17 H 0.098 0.902 18 C -0.139 4.139 19 C -0.159 4.159 20 C -0.151 4.151 21 C -0.188 4.188 22 C 0.050 3.950 23 H 0.068 0.932 24 O -0.364 6.364 25 H 0.031 0.969 26 H 0.076 0.924 27 H 0.113 0.887 28 H 0.063 0.937 29 H 0.104 0.896 30 H 0.224 0.776 31 H 0.080 0.920 32 H 0.097 0.903 33 H 0.045 0.955 34 H 0.098 0.902 35 H 0.082 0.918 36 H 0.077 0.923 37 H 0.077 0.923 38 H 0.073 0.927 39 H 0.084 0.916 40 H 0.089 0.911 41 H 0.078 0.922 42 H 0.216 0.784 Dipole moment (debyes) X Y Z Total from point charges 4.440 -14.484 -9.324 17.789 hybrid contribution 0.373 1.150 -1.015 1.578 sum 4.813 -13.334 -10.339 17.545 Atomic orbital electron populations 1.22523 0.86796 1.00600 1.02385 1.61543 1.08375 1.12430 1.41672 1.21928 1.00637 0.89245 0.96912 1.19775 0.85267 0.82847 0.88957 1.90475 1.43729 1.64698 1.47134 1.41878 1.49677 1.10646 1.18187 1.19697 1.32764 0.95271 0.94922 0.87955 1.25241 0.96923 0.96652 0.99153 1.69617 1.38373 1.12145 1.34405 0.85873 0.79089 0.78041 0.81374 1.20433 1.20997 1.19446 1.22118 0.95693 0.97667 0.90989 1.21167 0.96041 0.98059 0.93901 0.90190 1.21378 0.95475 0.98767 0.98263 1.21570 0.97161 1.00143 0.97044 1.21434 1.00148 0.98575 0.94938 1.22220 0.97246 1.00500 0.98883 1.21815 0.89764 0.86615 0.96759 0.93201 1.86558 1.57255 1.40989 1.51554 0.96887 0.92433 0.88673 0.93707 0.89632 0.77570 0.91961 0.90288 0.95495 0.90248 0.91839 0.92283 0.92255 0.92709 0.91595 0.91093 0.92161 0.78399 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.43 9.19 60.07 0.55 0.98 16 2 N -0.52 -8.98 3.89 -244.37 -0.95 -9.93 16 3 C 0.04 0.82 5.27 -4.98 -0.03 0.79 16 4 C 0.45 10.72 7.54 -10.99 -0.08 10.64 16 5 O -0.58 -15.71 13.88 5.55 0.08 -15.63 16 6 N -0.57 -14.58 5.29 -10.96 -0.06 -14.64 16 7 C -0.30 -8.36 9.68 -14.93 -0.14 -8.51 16 8 H 0.10 3.02 7.16 -52.49 -0.38 2.64 16 9 C 0.02 0.58 5.50 -17.47 -0.10 0.49 16 10 N -0.90 -24.82 13.05 55.50 0.72 -24.10 16 11 Si 0.93 21.26 29.55 -169.99 -5.02 16.24 16 12 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 13 H -0.28 -6.37 7.11 56.52 0.40 -5.96 16 14 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 15 C 0.06 0.90 4.17 -3.83 -0.02 0.88 16 16 C -0.07 -0.93 2.08 -90.62 -0.19 -1.12 16 17 H 0.08 1.08 6.66 -51.93 -0.35 0.73 16 18 C -0.10 -1.37 4.95 -26.73 -0.13 -1.51 16 19 C -0.12 -1.42 5.92 -26.73 -0.16 -1.58 16 20 C -0.11 -1.11 5.78 -26.73 -0.15 -1.26 16 21 C -0.15 -1.36 5.63 -26.76 -0.15 -1.51 16 22 C 0.11 1.12 3.21 -26.76 -0.09 1.03 16 23 H 0.05 0.48 8.14 -51.93 -0.42 0.05 16 24 O -0.56 -5.57 11.39 -35.23 -0.40 -5.98 16 25 H 0.01 0.20 8.07 -51.93 -0.42 -0.21 16 26 H 0.06 0.87 7.84 -51.93 -0.41 0.46 16 27 H 0.09 1.95 5.99 -51.93 -0.31 1.64 16 28 H 0.04 0.78 8.07 -51.93 -0.42 0.36 16 29 H 0.09 1.45 6.57 -51.93 -0.34 1.11 16 30 H 0.39 9.65 7.90 -40.82 -0.32 9.32 16 31 H 0.27 7.03 8.31 -40.82 -0.34 6.69 16 32 H 0.08 1.13 7.44 -51.93 -0.39 0.74 16 33 H 0.03 0.36 8.00 -51.93 -0.42 -0.05 16 34 H 0.08 1.30 7.76 -51.93 -0.40 0.89 16 35 H 0.06 0.89 7.68 -51.93 -0.40 0.49 16 36 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 37 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 38 H 0.05 0.49 8.14 -51.93 -0.42 0.06 16 39 H 0.07 0.66 7.68 -51.93 -0.40 0.26 16 40 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 41 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 42 H 0.37 2.17 9.08 45.56 0.41 2.59 16 LS Contribution 330.37 15.07 4.98 4.98 Total: -1.00 -31.26 330.37 -7.54 -38.80 By element: Atomic # 1 Polarization: 17.14 SS G_CDS: -6.20 Total: 10.94 kcal Atomic # 6 Polarization: 0.01 SS G_CDS: -0.68 Total: -0.68 kcal Atomic # 7 Polarization: -48.39 SS G_CDS: -0.29 Total: -48.67 kcal Atomic # 8 Polarization: -21.28 SS G_CDS: -0.32 Total: -21.61 kcal Atomic # 14 Polarization: 21.26 SS G_CDS: -5.02 Total: 16.24 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -31.26 -7.54 -38.80 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000305815094.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.763 kcal (2) G-P(sol) polarization free energy of solvation -31.260 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.024 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.541 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.801 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.564 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds