Wall clock time and date at job start Mon Mar 30 2020 01:22:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46902 * 1 3 3 C 1.46894 * 110.99935 * 2 1 4 4 C 1.50703 * 109.47137 * 66.04780 * 3 2 1 5 5 O 1.21293 * 120.00015 * 359.97438 * 4 3 2 6 6 N 1.34773 * 119.99822 * 180.27547 * 4 3 2 7 7 C 1.37109 * 120.00080 * 179.72097 * 6 4 3 8 8 H 1.07996 * 119.99469 * 0.02562 * 7 6 4 9 9 C 1.38942 * 120.00061 * 179.97438 * 7 6 4 10 10 N 1.31418 * 120.00256 * 0.02562 * 9 7 6 11 11 Si 1.86805 * 119.99895 * 180.02562 * 9 7 6 12 12 H 1.48506 * 109.46730 * 90.00428 * 11 9 7 13 13 H 1.48493 * 109.47191 * 210.00013 * 11 9 7 14 14 H 1.48496 * 109.47343 * 330.00311 * 11 9 7 15 15 C 1.46894 * 110.99979 * 236.04530 * 2 1 3 16 16 C 1.53002 * 109.47181 * 199.86807 * 15 2 1 17 17 H 1.08997 * 109.47065 * 305.26501 * 16 15 2 18 18 C 1.52999 * 109.47205 * 65.26228 * 16 15 2 19 19 C 1.53002 * 109.47205 * 179.97438 * 18 16 15 20 20 C 1.52998 * 109.46873 * 300.00302 * 19 18 16 21 21 C 1.52999 * 109.47452 * 59.99849 * 20 19 18 22 22 C 1.52998 * 109.46873 * 185.26530 * 16 15 2 23 23 H 1.09001 * 109.47698 * 60.00180 * 22 16 15 24 24 O 1.42895 * 109.47469 * 299.99579 * 22 16 15 25 25 H 1.08999 * 109.47283 * 54.65362 * 1 2 3 26 26 H 1.09003 * 109.47447 * 174.65801 * 1 2 3 27 27 H 1.08999 * 109.47422 * 294.65867 * 1 2 3 28 28 H 1.09001 * 109.47359 * 306.04761 * 3 2 1 29 29 H 1.09000 * 109.47059 * 186.04606 * 3 2 1 30 30 H 0.97005 * 120.00523 * 359.72365 * 6 4 3 31 31 H 0.97002 * 120.00027 * 179.97438 * 10 9 7 32 32 H 1.09006 * 109.47177 * 319.86663 * 15 2 1 33 33 H 1.08998 * 109.47062 * 79.86640 * 15 2 1 34 34 H 1.08998 * 109.47551 * 300.00356 * 18 16 15 35 35 H 1.09004 * 109.46519 * 60.00128 * 18 16 15 36 36 H 1.09004 * 109.46982 * 59.99869 * 19 18 16 37 37 H 1.08992 * 109.47019 * 179.97438 * 19 18 16 38 38 H 1.09000 * 109.46789 * 179.97438 * 20 19 18 39 39 H 1.08999 * 109.47663 * 299.99529 * 20 19 18 40 40 H 1.09004 * 109.47257 * 59.99910 * 21 20 19 41 41 H 1.08998 * 109.47551 * 179.97438 * 21 20 19 42 42 H 0.96695 * 114.00674 * 180.02562 * 24 22 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.6369 2.0471 1.2985 5 8 1.0047 1.4455 2.1408 6 7 2.0137 3.3218 1.5212 7 6 1.6826 3.9384 2.7002 8 1 1.1203 3.4025 3.4505 9 6 2.0714 5.2524 2.9301 10 7 2.7561 5.9043 2.0172 11 14 1.6210 6.0923 4.5367 12 1 2.6964 5.8613 5.5344 13 1 1.4649 7.5509 4.3060 14 1 0.3437 5.5324 5.0469 15 6 1.9954 -0.7660 -1.1375 16 6 3.4447 -1.1670 -0.8554 17 1 4.0283 -0.2774 -0.6184 18 6 3.4849 -2.1339 0.3297 19 6 4.9342 -2.5355 0.6114 20 6 5.5235 -3.2184 -0.6244 21 6 5.4834 -2.2515 -1.8094 22 6 4.0347 -1.8497 -2.0910 23 1 4.0062 -1.1609 -2.9352 24 8 3.2697 -3.0160 -2.4017 25 1 -0.3634 0.5945 -0.8382 26 1 -0.3634 -1.0232 -0.0957 27 1 -0.3634 0.4287 0.9339 28 1 1.5611 1.9273 -0.8309 29 1 3.0797 1.3444 -0.1082 30 1 2.5190 3.8031 0.8475 31 1 3.0272 6.8218 2.1776 32 1 1.3921 -1.6622 -1.2825 33 1 1.9568 -0.1525 -2.0376 34 1 3.0646 -1.6476 1.2099 35 1 2.9013 -3.0235 0.0926 36 1 5.5181 -1.6460 0.8482 37 1 4.9628 -3.2239 1.4559 38 1 6.5561 -3.5041 -0.4238 39 1 4.9397 -4.1078 -0.8612 40 1 6.0673 -1.3620 -1.5726 41 1 5.9036 -2.7378 -2.6897 42 1 3.5878 -3.5004 -3.1758 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000305815094.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:22:56 Heat of formation + Delta-G solvation = -122.895193 kcal Electronic energy + Delta-G solvation = -21589.305440 eV Core-core repulsion = 18374.535236 eV Total energy + Delta-G solvation = -3214.770205 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 270.173 amu Computer time = 1.50 seconds Orbital eigenvalues (eV) -40.70397 -39.96469 -37.63476 -35.92005 -35.73522 -33.26770 -32.46743 -30.71857 -29.55239 -27.32032 -26.51458 -23.95490 -23.21864 -21.83896 -20.99738 -20.46561 -19.80570 -17.88508 -17.64172 -16.78256 -16.65307 -16.49738 -15.99007 -15.62178 -15.42925 -15.26465 -14.85171 -14.76548 -14.35834 -13.78403 -13.68203 -13.44070 -13.25343 -13.03584 -12.92226 -12.78844 -12.60744 -12.50811 -12.39098 -12.22081 -12.11659 -11.69083 -11.53722 -11.45566 -11.32804 -10.79022 -10.50872 -10.24502 -9.98985 -9.13323 -8.45444 -5.93996 1.38279 1.41680 1.54492 2.06847 2.29348 2.81227 3.21179 3.40677 3.46371 3.83693 3.90002 3.97097 4.18049 4.23059 4.36318 4.38644 4.43967 4.49442 4.55911 4.58436 4.64872 4.67154 4.71027 4.80831 4.89028 5.02547 5.11605 5.16164 5.19315 5.31019 5.35392 5.41500 5.42347 5.57526 5.65393 5.91979 6.11132 6.26971 6.62568 7.05085 7.14567 7.57937 8.14423 8.72154 Molecular weight = 270.17amu Principal moments of inertia in cm(-1) A = 0.027646 B = 0.003988 C = 0.003801 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1012.556986 B = 7019.728058 C = 7363.891100 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 N -0.534 5.534 3 C 0.058 3.942 4 C 0.443 3.557 5 O -0.613 6.613 6 N -0.575 5.575 7 C -0.332 4.332 8 H 0.078 0.922 9 C -0.012 4.012 10 N -0.922 5.922 11 Si 0.992 3.008 12 H -0.271 1.271 13 H -0.270 1.270 14 H -0.273 1.273 15 C 0.070 3.930 16 C -0.075 4.075 17 H 0.072 0.928 18 C -0.095 4.095 19 C -0.122 4.122 20 C -0.109 4.109 21 C -0.148 4.148 22 C 0.116 3.884 23 H 0.064 0.936 24 O -0.573 6.573 25 H 0.025 0.975 26 H 0.076 0.924 27 H 0.056 0.944 28 H 0.064 0.936 29 H 0.105 0.895 30 H 0.395 0.605 31 H 0.277 0.723 32 H 0.079 0.921 33 H 0.041 0.959 34 H 0.042 0.958 35 H 0.057 0.943 36 H 0.052 0.948 37 H 0.057 0.943 38 H 0.067 0.933 39 H 0.065 0.935 40 H 0.069 0.931 41 H 0.085 0.915 42 H 0.390 0.610 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.053 -14.619 -12.490 20.158 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 N -0.258 5.258 3 C -0.073 4.073 4 C 0.230 3.770 5 O -0.499 6.499 6 N -0.213 5.213 7 C -0.461 4.461 8 H 0.096 0.904 9 C -0.212 4.212 10 N -0.563 5.563 11 Si 0.816 3.184 12 H -0.197 1.197 13 H -0.195 1.195 14 H -0.198 1.198 15 C -0.058 4.058 16 C -0.094 4.094 17 H 0.091 0.909 18 C -0.133 4.133 19 C -0.160 4.160 20 C -0.147 4.147 21 C -0.185 4.185 22 C 0.057 3.943 23 H 0.082 0.918 24 O -0.381 6.381 25 H 0.044 0.956 26 H 0.095 0.905 27 H 0.074 0.926 28 H 0.082 0.918 29 H 0.123 0.877 30 H 0.229 0.771 31 H 0.087 0.913 32 H 0.098 0.902 33 H 0.060 0.940 34 H 0.061 0.939 35 H 0.076 0.924 36 H 0.071 0.929 37 H 0.076 0.924 38 H 0.085 0.915 39 H 0.084 0.916 40 H 0.088 0.912 41 H 0.103 0.897 42 H 0.239 0.761 Dipole moment (debyes) X Y Z Total from point charges 5.517 -14.862 -10.987 19.288 hybrid contribution 0.020 1.189 -0.521 1.298 sum 5.536 -13.673 -11.508 18.709 Atomic orbital electron populations 1.22397 0.86990 1.01700 1.00762 1.61498 1.08462 1.11891 1.43988 1.21780 1.01918 0.89737 0.93906 1.20765 0.83677 0.82197 0.90367 1.90457 1.45032 1.65417 1.49024 1.41938 1.50204 1.11382 1.17793 1.19653 1.34360 0.96279 0.95852 0.90410 1.26012 0.96289 0.96572 1.02310 1.69676 1.38304 1.12599 1.35689 0.84944 0.78635 0.77396 0.77456 1.19664 1.19489 1.19824 1.22132 0.96298 0.97205 0.90116 1.21177 0.95265 0.97860 0.95052 0.90931 1.21252 0.96430 0.98353 0.97229 1.21568 0.95919 1.00108 0.98382 1.21398 1.00606 0.98510 0.94141 1.22211 0.96490 1.00405 0.99412 1.21683 0.90043 0.86954 0.95619 0.91809 1.86511 1.57625 1.41057 1.52919 0.95614 0.90505 0.92552 0.91804 0.87709 0.77104 0.91336 0.90210 0.94045 0.93946 0.92437 0.92923 0.92394 0.91467 0.91589 0.91225 0.89652 0.76124 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 1.01 9.19 127.69 1.17 2.19 16 2 N -0.53 -18.37 3.89 -927.06 -3.61 -21.98 16 3 C 0.06 2.11 5.27 85.56 0.45 2.56 16 4 C 0.44 21.77 7.54 87.66 0.66 22.43 16 5 O -0.61 -34.80 13.88 -3.07 -0.04 -34.84 16 6 N -0.58 -30.26 5.29 -306.98 -1.62 -31.88 16 7 C -0.33 -19.19 9.68 84.04 0.81 -18.38 16 8 H 0.08 4.80 7.16 -2.91 -0.02 4.78 16 9 C -0.01 -0.67 5.50 84.92 0.47 -0.20 16 10 N -0.92 -50.29 13.05 21.66 0.28 -50.01 16 11 Si 0.99 43.53 29.55 68.60 2.03 45.56 16 12 H -0.27 -11.56 7.11 99.48 0.71 -10.85 16 13 H -0.27 -11.18 7.11 99.48 0.71 -10.47 16 14 H -0.27 -12.07 7.11 99.48 0.71 -11.36 16 15 C 0.07 1.86 4.17 86.31 0.36 2.22 16 16 C -0.07 -1.80 2.08 -10.79 -0.02 -1.83 16 17 H 0.07 1.86 6.66 -2.39 -0.02 1.85 16 18 C -0.09 -2.57 4.95 30.59 0.15 -2.41 16 19 C -0.12 -2.78 5.92 30.59 0.18 -2.60 16 20 C -0.11 -1.89 5.78 30.59 0.18 -1.71 16 21 C -0.15 -2.20 5.63 30.58 0.17 -2.02 16 22 C 0.12 2.04 3.21 30.58 0.10 2.13 16 23 H 0.06 0.98 8.14 -2.39 -0.02 0.96 16 24 O -0.57 -9.76 11.39 -148.98 -1.70 -11.46 16 25 H 0.03 0.80 8.07 -2.39 -0.02 0.78 16 26 H 0.08 2.28 7.84 -2.39 -0.02 2.26 16 27 H 0.06 2.39 5.99 -2.39 -0.01 2.37 16 28 H 0.06 2.12 8.07 -2.39 -0.02 2.10 16 29 H 0.10 3.44 6.57 -2.39 -0.02 3.42 16 30 H 0.40 19.73 7.90 -92.70 -0.73 18.99 16 31 H 0.28 14.14 8.31 -92.71 -0.77 13.37 16 32 H 0.08 2.13 7.44 -2.38 -0.02 2.12 16 33 H 0.04 1.00 8.00 -2.39 -0.02 0.98 16 34 H 0.04 1.44 7.76 -2.39 -0.02 1.42 16 35 H 0.06 1.59 7.68 -2.38 -0.02 1.58 16 36 H 0.05 1.25 8.14 -2.38 -0.02 1.23 16 37 H 0.06 1.30 8.14 -2.39 -0.02 1.28 16 38 H 0.07 1.01 8.14 -2.39 -0.02 0.99 16 39 H 0.07 1.16 7.68 -2.39 -0.02 1.14 16 40 H 0.07 1.08 8.14 -2.38 -0.02 1.06 16 41 H 0.08 0.89 8.14 -2.39 -0.02 0.87 16 42 H 0.39 3.22 9.08 -74.06 -0.67 2.54 16 Total: -1.00 -68.48 330.37 -0.37 -68.85 By element: Atomic # 1 Polarization: 33.78 SS G_CDS: -0.39 Total: 33.39 kcal Atomic # 6 Polarization: -2.30 SS G_CDS: 4.68 Total: 2.38 kcal Atomic # 7 Polarization: -98.92 SS G_CDS: -4.95 Total: -103.87 kcal Atomic # 8 Polarization: -44.56 SS G_CDS: -1.74 Total: -46.30 kcal Atomic # 14 Polarization: 43.53 SS G_CDS: 2.03 Total: 45.56 kcal Total: -68.48 -0.37 -68.85 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000305815094.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.048 kcal (2) G-P(sol) polarization free energy of solvation -68.480 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.528 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.367 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.847 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.895 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.50 seconds