Wall clock time and date at job start Mon Mar 30 2020 01:23:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46902 * 1 3 3 C 1.46900 * 111.00195 * 2 1 4 4 C 1.50703 * 109.46950 * 66.04711 * 3 2 1 5 5 O 1.21295 * 119.99889 * 359.97438 * 4 3 2 6 6 N 1.34774 * 119.99903 * 180.02562 * 4 3 2 7 7 C 1.37092 * 120.00012 * 180.02562 * 6 4 3 8 8 H 1.08002 * 120.00234 * 359.97438 * 7 6 4 9 9 C 1.38951 * 120.00101 * 179.97438 * 7 6 4 10 10 N 1.31414 * 120.00139 * 179.97438 * 9 7 6 11 11 Si 1.86803 * 120.00030 * 359.97438 * 9 7 6 12 12 H 1.48499 * 109.47285 * 89.99835 * 11 9 7 13 13 H 1.48502 * 109.47151 * 209.99991 * 11 9 7 14 14 H 1.48502 * 109.46685 * 329.99720 * 11 9 7 15 15 C 1.46905 * 110.99871 * 236.04131 * 2 1 3 16 16 C 1.52997 * 109.47495 * 293.95852 * 15 2 1 17 17 H 1.08996 * 109.46952 * 54.99771 * 16 15 2 18 18 C 1.53002 * 109.46817 * 294.99712 * 16 15 2 19 19 C 1.52997 * 109.46817 * 180.02562 * 18 16 15 20 20 C 1.53006 * 109.47127 * 60.00361 * 19 18 16 21 21 C 1.52999 * 109.46626 * 299.99539 * 20 19 18 22 22 C 1.52996 * 109.47131 * 175.00077 * 16 15 2 23 23 H 1.09000 * 109.47380 * 59.99237 * 22 16 15 24 24 O 1.42909 * 109.47119 * 300.00020 * 22 16 15 25 25 H 1.09002 * 109.47085 * 183.95265 * 1 2 3 26 26 H 1.09000 * 109.46883 * 303.95349 * 1 2 3 27 27 H 1.08994 * 109.47014 * 63.95518 * 1 2 3 28 28 H 1.08997 * 109.46960 * 186.04715 * 3 2 1 29 29 H 1.08995 * 109.47216 * 306.04642 * 3 2 1 30 30 H 0.97006 * 119.99923 * 359.97438 * 6 4 3 31 31 H 0.97002 * 119.99810 * 179.97438 * 10 9 7 32 32 H 1.09001 * 109.46812 * 173.95191 * 15 2 1 33 33 H 1.09002 * 109.46690 * 53.95906 * 15 2 1 34 34 H 1.09002 * 109.47070 * 60.00180 * 18 16 15 35 35 H 1.08996 * 109.47407 * 299.99780 * 18 16 15 36 36 H 1.09001 * 109.47502 * 300.00518 * 19 18 16 37 37 H 1.09001 * 109.47289 * 180.02562 * 19 18 16 38 38 H 1.08993 * 109.46955 * 60.00011 * 20 19 18 39 39 H 1.09000 * 109.47050 * 179.97438 * 20 19 18 40 40 H 1.09002 * 109.46719 * 180.02562 * 21 20 19 41 41 H 1.08993 * 109.47839 * 299.99931 * 21 20 19 42 42 H 0.96698 * 113.99777 * 180.02562 * 24 22 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.6370 2.0471 1.2985 5 8 1.0047 1.4455 2.1408 6 7 2.0181 3.3201 1.5234 7 6 1.6925 3.9346 2.7048 8 1 1.1301 3.3987 3.4552 9 6 2.0858 5.2469 2.9369 10 7 1.7732 5.8361 4.0691 11 14 3.0590 6.1736 1.6393 12 1 2.1225 6.8777 0.7270 13 1 3.9458 7.1649 2.2998 14 1 3.8825 5.2148 0.8597 15 6 1.9955 -0.7661 -1.1376 16 6 1.6314 -2.2427 -0.9703 17 1 0.5532 -2.3389 -0.8433 18 6 2.3425 -2.8069 0.2613 19 6 1.9790 -4.2836 0.4282 20 6 2.4180 -5.0606 -0.8147 21 6 1.7068 -4.4963 -2.0463 22 6 2.0699 -3.0200 -2.2130 23 1 3.1482 -2.9237 -2.3402 24 8 1.4058 -2.4930 -3.3635 25 1 -0.3633 -1.0252 0.0708 26 1 -0.3633 0.5740 0.8525 27 1 -0.3633 0.4512 -0.9233 28 1 3.0798 1.3443 -0.1083 29 1 1.5612 1.9273 -0.8309 30 1 2.5235 3.8013 0.8495 31 1 2.0482 6.7521 4.2313 32 1 3.0797 -0.6612 -1.1756 33 1 1.5611 -0.3873 -2.0628 34 1 2.0301 -2.2531 1.1467 35 1 3.4208 -2.7107 0.1343 36 1 0.9007 -4.3804 0.5550 37 1 2.4852 -4.6856 1.3059 38 1 3.4962 -4.9639 -0.9415 39 1 2.1594 -6.1127 -0.6956 40 1 2.0192 -5.0501 -2.9316 41 1 0.6286 -4.5930 -1.9195 42 1 1.6365 -2.9394 -4.1897 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000305815097.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:23:03 Heat of formation + Delta-G solvation = -93.593619 kcal Electronic energy + Delta-G solvation = -21382.151658 eV Core-core repulsion = 18168.652065 eV Total energy + Delta-G solvation = -3213.499593 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 270.173 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -39.63387 -38.49970 -36.33912 -35.56570 -33.86374 -31.67699 -31.47983 -29.73410 -27.93393 -26.39140 -24.56466 -22.96219 -22.23203 -20.60727 -19.83472 -19.27411 -18.18094 -17.39245 -16.10800 -15.76217 -15.17842 -14.97273 -14.83335 -14.33969 -14.13104 -14.03062 -13.63000 -13.38283 -13.01174 -12.92652 -12.71839 -12.35408 -12.08637 -11.87032 -11.65409 -11.55417 -11.36928 -11.26334 -10.98898 -10.88247 -10.71136 -10.55980 -10.40350 -10.18366 -9.95027 -9.88466 -9.48878 -8.47597 -8.13103 -7.81924 -6.27144 -3.78092 3.05982 3.09881 3.17754 3.80601 3.95958 4.06671 4.14119 4.51813 4.59841 4.81092 4.89927 4.97291 5.09967 5.21167 5.25423 5.30254 5.34723 5.39475 5.56971 5.58719 5.66012 5.76734 5.81431 5.84847 5.93296 5.96010 6.01163 6.03413 6.05726 6.07858 6.20443 6.39648 6.48012 6.63200 7.29512 7.43073 7.48301 7.64025 8.19601 8.65445 9.00067 9.47479 9.89657 10.86166 Molecular weight = 270.17amu Principal moments of inertia in cm(-1) A = 0.035721 B = 0.003686 C = 0.003533 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 783.668843 B = 7595.160776 C = 7924.045542 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 N -0.517 5.517 3 C 0.043 3.957 4 C 0.455 3.545 5 O -0.558 6.558 6 N -0.593 5.593 7 C -0.303 4.303 8 H 0.119 0.881 9 C 0.041 3.959 10 N -0.883 5.883 11 Si 0.879 3.121 12 H -0.272 1.272 13 H -0.277 1.277 14 H -0.269 1.269 15 C 0.061 3.939 16 C -0.072 4.072 17 H 0.078 0.922 18 C -0.107 4.107 19 C -0.124 4.124 20 C -0.117 4.117 21 C -0.149 4.149 22 C 0.109 3.891 23 H 0.053 0.947 24 O -0.566 6.566 25 H 0.061 0.939 26 H 0.094 0.906 27 H 0.013 0.987 28 H 0.087 0.913 29 H 0.047 0.953 30 H 0.370 0.630 31 H 0.273 0.727 32 H 0.067 0.933 33 H 0.040 0.960 34 H 0.088 0.912 35 H 0.058 0.942 36 H 0.061 0.939 37 H 0.063 0.937 38 H 0.061 0.939 39 H 0.061 0.939 40 H 0.060 0.940 41 H 0.069 0.931 42 H 0.373 0.627 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.152 -17.971 -15.574 23.988 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 N -0.240 5.240 3 C -0.088 4.088 4 C 0.241 3.759 5 O -0.440 6.440 6 N -0.233 5.233 7 C -0.432 4.432 8 H 0.137 0.863 9 C -0.162 4.162 10 N -0.524 5.524 11 Si 0.706 3.294 12 H -0.197 1.197 13 H -0.202 1.202 14 H -0.195 1.195 15 C -0.067 4.067 16 C -0.091 4.091 17 H 0.097 0.903 18 C -0.145 4.145 19 C -0.161 4.161 20 C -0.155 4.155 21 C -0.187 4.187 22 C 0.050 3.950 23 H 0.071 0.929 24 O -0.371 6.371 25 H 0.080 0.920 26 H 0.112 0.888 27 H 0.032 0.968 28 H 0.105 0.895 29 H 0.065 0.935 30 H 0.202 0.798 31 H 0.083 0.917 32 H 0.086 0.914 33 H 0.058 0.942 34 H 0.107 0.893 35 H 0.077 0.923 36 H 0.080 0.920 37 H 0.082 0.918 38 H 0.080 0.920 39 H 0.080 0.920 40 H 0.079 0.921 41 H 0.088 0.912 42 H 0.219 0.781 Dipole moment (debyes) X Y Z Total from point charges 2.624 -18.008 -13.961 22.937 hybrid contribution 0.849 0.904 -2.162 2.492 sum 3.473 -17.104 -16.123 23.761 Atomic orbital electron populations 1.22561 0.86869 1.02001 1.01236 1.61566 1.08655 1.12129 1.41671 1.21883 1.00663 0.89596 0.96702 1.19682 0.84922 0.82339 0.89004 1.90520 1.42531 1.64105 1.46847 1.42222 1.51100 1.12053 1.17931 1.19428 1.33573 0.96190 0.93960 0.86293 1.25029 0.97940 0.96509 0.96727 1.69625 1.45983 1.13538 1.23230 0.86678 0.80505 0.80527 0.81725 1.19703 1.20224 1.19483 1.22117 0.99622 0.93050 0.91909 1.21123 1.01488 0.93807 0.92693 0.90333 1.21500 0.99800 0.94654 0.98496 1.21607 1.01393 0.95862 0.97253 1.21494 1.00126 0.99209 0.94630 1.22231 1.01696 0.96251 0.98504 1.21858 0.95264 0.91890 0.86027 0.92880 1.86566 1.71026 1.62108 1.17389 0.92035 0.88772 0.96808 0.89468 0.93505 0.79764 0.91685 0.91407 0.94189 0.89307 0.92293 0.91981 0.91828 0.92000 0.92047 0.92102 0.91218 0.78076 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.36 8.97 60.07 0.54 0.89 16 2 N -0.52 -8.62 3.95 -244.37 -0.97 -9.59 16 3 C 0.04 0.76 5.45 -4.97 -0.03 0.73 16 4 C 0.45 10.55 7.48 -10.99 -0.08 10.47 16 5 O -0.56 -15.03 13.91 5.54 0.08 -14.95 16 6 N -0.59 -14.41 5.09 -10.96 -0.06 -14.46 16 7 C -0.30 -8.67 10.16 -14.94 -0.15 -8.82 16 8 H 0.12 3.88 7.39 -52.49 -0.39 3.49 16 9 C 0.04 1.13 5.50 -17.47 -0.10 1.03 16 10 N -0.88 -26.10 13.96 55.50 0.77 -25.33 16 11 Si 0.88 19.66 27.74 -169.99 -4.71 14.94 16 12 H -0.27 -5.95 7.11 56.52 0.40 -5.55 16 13 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 14 H -0.27 -5.51 6.52 56.52 0.37 -5.14 16 15 C 0.06 0.83 4.27 -3.82 -0.02 0.81 16 16 C -0.07 -0.85 1.85 -90.62 -0.17 -1.02 16 17 H 0.08 1.03 6.33 -51.93 -0.33 0.70 16 18 C -0.11 -1.24 5.09 -26.73 -0.14 -1.37 16 19 C -0.12 -1.19 5.92 -26.73 -0.16 -1.35 16 20 C -0.12 -0.94 5.92 -26.73 -0.16 -1.09 16 21 C -0.15 -1.20 5.54 -26.76 -0.15 -1.35 16 22 C 0.11 1.04 2.90 -26.76 -0.08 0.96 16 23 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 24 O -0.57 -5.62 12.56 -35.23 -0.44 -6.07 16 25 H 0.06 0.93 6.37 -51.93 -0.33 0.60 16 26 H 0.09 1.90 5.82 -51.93 -0.30 1.59 16 27 H 0.01 0.21 8.14 -51.93 -0.42 -0.21 16 28 H 0.09 1.36 7.93 -51.93 -0.41 0.95 16 29 H 0.05 0.75 8.12 -51.93 -0.42 0.33 16 30 H 0.37 7.92 5.76 -40.82 -0.24 7.69 16 31 H 0.27 7.44 8.31 -40.82 -0.34 7.10 16 32 H 0.07 0.86 7.93 -51.93 -0.41 0.45 16 33 H 0.04 0.56 7.52 -51.93 -0.39 0.17 16 34 H 0.09 1.27 7.75 -51.93 -0.40 0.86 16 35 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 36 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 37 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 38 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 39 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 40 H 0.06 0.40 8.14 -51.93 -0.42 -0.03 16 41 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 42 H 0.37 2.08 9.08 45.56 0.41 2.49 16 LS Contribution 328.59 15.07 4.95 4.95 Total: -1.00 -32.76 328.59 -7.24 -40.00 By element: Atomic # 1 Polarization: 16.80 SS G_CDS: -6.18 Total: 10.61 kcal Atomic # 6 Polarization: 0.57 SS G_CDS: -0.68 Total: -0.11 kcal Atomic # 7 Polarization: -49.13 SS G_CDS: -0.25 Total: -49.38 kcal Atomic # 8 Polarization: -20.65 SS G_CDS: -0.37 Total: -21.02 kcal Atomic # 14 Polarization: 19.66 SS G_CDS: -4.71 Total: 14.94 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -32.76 -7.24 -40.00 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000305815097.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.595 kcal (2) G-P(sol) polarization free energy of solvation -32.759 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.354 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.239 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.999 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.594 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds