Wall clock time and date at job start Mon Mar 30 2020 01:23:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46902 * 1 3 3 C 1.46900 * 111.00195 * 2 1 4 4 C 1.50703 * 109.46950 * 66.04711 * 3 2 1 5 5 O 1.21295 * 119.99889 * 359.97438 * 4 3 2 6 6 N 1.34774 * 119.99903 * 180.02562 * 4 3 2 7 7 C 1.37092 * 120.00012 * 180.02562 * 6 4 3 8 8 H 1.08002 * 120.00234 * 359.97438 * 7 6 4 9 9 C 1.38951 * 120.00101 * 179.97438 * 7 6 4 10 10 N 1.31414 * 120.00139 * 179.97438 * 9 7 6 11 11 Si 1.86803 * 120.00030 * 359.97438 * 9 7 6 12 12 H 1.48499 * 109.47285 * 89.99835 * 11 9 7 13 13 H 1.48502 * 109.47151 * 209.99991 * 11 9 7 14 14 H 1.48502 * 109.46685 * 329.99720 * 11 9 7 15 15 C 1.46905 * 110.99871 * 236.04131 * 2 1 3 16 16 C 1.52997 * 109.47495 * 293.95852 * 15 2 1 17 17 H 1.08996 * 109.46952 * 54.99771 * 16 15 2 18 18 C 1.53002 * 109.46817 * 294.99712 * 16 15 2 19 19 C 1.52997 * 109.46817 * 180.02562 * 18 16 15 20 20 C 1.53006 * 109.47127 * 60.00361 * 19 18 16 21 21 C 1.52999 * 109.46626 * 299.99539 * 20 19 18 22 22 C 1.52996 * 109.47131 * 175.00077 * 16 15 2 23 23 H 1.09000 * 109.47380 * 59.99237 * 22 16 15 24 24 O 1.42909 * 109.47119 * 300.00020 * 22 16 15 25 25 H 1.09002 * 109.47085 * 183.95265 * 1 2 3 26 26 H 1.09000 * 109.46883 * 303.95349 * 1 2 3 27 27 H 1.08994 * 109.47014 * 63.95518 * 1 2 3 28 28 H 1.08997 * 109.46960 * 186.04715 * 3 2 1 29 29 H 1.08995 * 109.47216 * 306.04642 * 3 2 1 30 30 H 0.97006 * 119.99923 * 359.97438 * 6 4 3 31 31 H 0.97002 * 119.99810 * 179.97438 * 10 9 7 32 32 H 1.09001 * 109.46812 * 173.95191 * 15 2 1 33 33 H 1.09002 * 109.46690 * 53.95906 * 15 2 1 34 34 H 1.09002 * 109.47070 * 60.00180 * 18 16 15 35 35 H 1.08996 * 109.47407 * 299.99780 * 18 16 15 36 36 H 1.09001 * 109.47502 * 300.00518 * 19 18 16 37 37 H 1.09001 * 109.47289 * 180.02562 * 19 18 16 38 38 H 1.08993 * 109.46955 * 60.00011 * 20 19 18 39 39 H 1.09000 * 109.47050 * 179.97438 * 20 19 18 40 40 H 1.09002 * 109.46719 * 180.02562 * 21 20 19 41 41 H 1.08993 * 109.47839 * 299.99931 * 21 20 19 42 42 H 0.96698 * 113.99777 * 180.02562 * 24 22 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.6370 2.0471 1.2985 5 8 1.0047 1.4455 2.1408 6 7 2.0181 3.3201 1.5234 7 6 1.6925 3.9346 2.7048 8 1 1.1301 3.3987 3.4552 9 6 2.0858 5.2469 2.9369 10 7 1.7732 5.8361 4.0691 11 14 3.0590 6.1736 1.6393 12 1 2.1225 6.8777 0.7270 13 1 3.9458 7.1649 2.2998 14 1 3.8825 5.2148 0.8597 15 6 1.9955 -0.7661 -1.1376 16 6 1.6314 -2.2427 -0.9703 17 1 0.5532 -2.3389 -0.8433 18 6 2.3425 -2.8069 0.2613 19 6 1.9790 -4.2836 0.4282 20 6 2.4180 -5.0606 -0.8147 21 6 1.7068 -4.4963 -2.0463 22 6 2.0699 -3.0200 -2.2130 23 1 3.1482 -2.9237 -2.3402 24 8 1.4058 -2.4930 -3.3635 25 1 -0.3633 -1.0252 0.0708 26 1 -0.3633 0.5740 0.8525 27 1 -0.3633 0.4512 -0.9233 28 1 3.0798 1.3443 -0.1083 29 1 1.5612 1.9273 -0.8309 30 1 2.5235 3.8013 0.8495 31 1 2.0482 6.7521 4.2313 32 1 3.0797 -0.6612 -1.1756 33 1 1.5611 -0.3873 -2.0628 34 1 2.0301 -2.2531 1.1467 35 1 3.4208 -2.7107 0.1343 36 1 0.9007 -4.3804 0.5550 37 1 2.4852 -4.6856 1.3059 38 1 3.4962 -4.9639 -0.9415 39 1 2.1594 -6.1127 -0.6956 40 1 2.0192 -5.0501 -2.9316 41 1 0.6286 -4.5930 -1.9195 42 1 1.6365 -2.9394 -4.1897 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000305815097.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:23:02 Heat of formation + Delta-G solvation = -119.716930 kcal Electronic energy + Delta-G solvation = -21383.284450 eV Core-core repulsion = 18168.652065 eV Total energy + Delta-G solvation = -3214.632385 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 270.173 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.73075 -40.04158 -37.64051 -36.35536 -35.88281 -33.74770 -32.49932 -30.49744 -29.47240 -27.60036 -26.34582 -24.03527 -23.16624 -21.56211 -21.23576 -20.68552 -20.13922 -18.10404 -17.80806 -16.92764 -16.72220 -16.42925 -15.98984 -15.52508 -15.33695 -15.21141 -14.86806 -14.66497 -14.52246 -14.23809 -13.82913 -13.68238 -13.64273 -13.08119 -12.87547 -12.66105 -12.57020 -12.46989 -12.38828 -12.25658 -11.97683 -11.72253 -11.54585 -11.46135 -11.28308 -10.97125 -10.66096 -10.31513 -10.21773 -9.15859 -8.40538 -6.00996 1.30510 1.35667 1.44622 1.97151 2.23509 2.62920 3.15647 3.25548 3.36545 3.71164 3.87366 4.06967 4.12851 4.18352 4.31066 4.37699 4.41179 4.45814 4.47251 4.50149 4.58374 4.64340 4.68024 4.77952 4.88021 4.99910 5.07875 5.16961 5.22381 5.26118 5.31303 5.37529 5.52711 5.54248 5.58418 5.91999 6.04101 6.21933 6.61309 6.89726 6.98366 7.41176 7.98901 8.77273 Molecular weight = 270.17amu Principal moments of inertia in cm(-1) A = 0.035721 B = 0.003686 C = 0.003533 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 783.668843 B = 7595.160776 C = 7924.045542 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 N -0.533 5.533 3 C 0.054 3.946 4 C 0.453 3.547 5 O -0.604 6.604 6 N -0.593 5.593 7 C -0.327 4.327 8 H 0.055 0.945 9 C -0.015 4.015 10 N -0.936 5.936 11 Si 0.964 3.036 12 H -0.258 1.258 13 H -0.274 1.274 14 H -0.231 1.231 15 C 0.066 3.934 16 C -0.071 4.071 17 H 0.060 0.940 18 C -0.102 4.102 19 C -0.123 4.123 20 C -0.113 4.113 21 C -0.144 4.144 22 C 0.114 3.886 23 H 0.066 0.934 24 O -0.584 6.584 25 H 0.071 0.929 26 H 0.053 0.947 27 H 0.026 0.974 28 H 0.119 0.881 29 H 0.073 0.927 30 H 0.389 0.611 31 H 0.279 0.721 32 H 0.082 0.918 33 H 0.041 0.959 34 H 0.053 0.947 35 H 0.066 0.934 36 H 0.053 0.947 37 H 0.066 0.934 38 H 0.071 0.929 39 H 0.073 0.927 40 H 0.084 0.916 41 H 0.058 0.942 42 H 0.392 0.608 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.397 -18.694 -19.380 27.462 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 N -0.258 5.258 3 C -0.078 4.078 4 C 0.240 3.760 5 O -0.488 6.488 6 N -0.235 5.235 7 C -0.456 4.456 8 H 0.073 0.927 9 C -0.214 4.214 10 N -0.577 5.577 11 Si 0.784 3.216 12 H -0.182 1.182 13 H -0.199 1.199 14 H -0.155 1.155 15 C -0.061 4.061 16 C -0.090 4.090 17 H 0.079 0.921 18 C -0.140 4.140 19 C -0.161 4.161 20 C -0.150 4.150 21 C -0.182 4.182 22 C 0.055 3.945 23 H 0.084 0.916 24 O -0.392 6.392 25 H 0.090 0.910 26 H 0.072 0.928 27 H 0.044 0.956 28 H 0.137 0.863 29 H 0.091 0.909 30 H 0.224 0.776 31 H 0.088 0.912 32 H 0.101 0.899 33 H 0.059 0.941 34 H 0.072 0.928 35 H 0.085 0.915 36 H 0.071 0.929 37 H 0.084 0.916 38 H 0.090 0.910 39 H 0.092 0.908 40 H 0.102 0.898 41 H 0.077 0.923 42 H 0.242 0.758 Dipole moment (debyes) X Y Z Total from point charges 4.873 -18.766 -17.805 26.323 hybrid contribution 0.054 1.036 -0.890 1.367 sum 4.927 -17.730 -18.694 26.232 Atomic orbital electron populations 1.22377 0.87492 1.02058 0.99921 1.61527 1.08342 1.11989 1.43911 1.21830 1.02661 0.89860 0.93404 1.20865 0.82910 0.81754 0.90433 1.90512 1.44052 1.65130 1.49073 1.42039 1.51855 1.12616 1.16995 1.19001 1.34697 0.97004 0.94888 0.92680 1.26104 0.98691 0.96940 0.99644 1.69808 1.47382 1.14338 1.26126 0.85371 0.78907 0.79049 0.78236 1.18250 1.19930 1.15476 1.22167 1.00231 0.93347 0.90348 1.21096 1.00417 0.93299 0.94227 0.92131 1.21401 1.00088 0.95508 0.97019 1.21592 1.00947 0.94882 0.98637 1.21474 1.00639 0.99478 0.93441 1.22193 1.01033 0.95517 0.99465 1.21756 0.95721 0.92102 0.84905 0.91613 1.86511 1.71390 1.62873 1.18433 0.90993 0.92788 0.95588 0.86341 0.90904 0.77578 0.91169 0.89932 0.94126 0.92828 0.91522 0.92860 0.91559 0.91033 0.90839 0.89782 0.92346 0.75806 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 1.01 8.97 127.69 1.15 2.15 16 2 N -0.53 -17.29 3.95 -927.05 -3.67 -20.96 16 3 C 0.05 1.78 5.45 85.56 0.47 2.24 16 4 C 0.45 21.19 7.48 87.66 0.66 21.84 16 5 O -0.60 -34.20 13.91 -3.08 -0.04 -34.24 16 6 N -0.59 -28.75 5.09 -306.98 -1.56 -30.31 16 7 C -0.33 -19.51 10.16 84.04 0.85 -18.65 16 8 H 0.06 3.91 7.39 -2.91 -0.02 3.89 16 9 C -0.02 -0.87 5.50 84.93 0.47 -0.40 16 10 N -0.94 -57.22 13.96 21.66 0.30 -56.91 16 11 Si 0.96 39.45 27.74 68.60 1.90 41.36 16 12 H -0.26 -10.02 7.11 99.48 0.71 -9.32 16 13 H -0.27 -11.10 7.11 99.48 0.71 -10.39 16 14 H -0.23 -8.00 6.52 99.48 0.65 -7.35 16 15 C 0.07 1.64 4.27 86.30 0.37 2.00 16 16 C -0.07 -1.58 1.85 -10.79 -0.02 -1.60 16 17 H 0.06 1.55 6.33 -2.39 -0.02 1.54 16 18 C -0.10 -2.29 5.09 30.59 0.16 -2.13 16 19 C -0.12 -2.23 5.92 30.60 0.18 -2.05 16 20 C -0.11 -1.50 5.92 30.60 0.18 -1.32 16 21 C -0.14 -1.91 5.54 30.58 0.17 -1.74 16 22 C 0.11 1.85 2.90 30.57 0.09 1.94 16 23 H 0.07 0.93 8.14 -2.39 -0.02 0.91 16 24 O -0.58 -9.84 12.56 -148.98 -1.87 -11.71 16 25 H 0.07 2.23 6.37 -2.39 -0.02 2.22 16 26 H 0.05 2.28 5.82 -2.39 -0.01 2.26 16 27 H 0.03 0.80 8.14 -2.39 -0.02 0.78 16 28 H 0.12 3.24 7.93 -2.39 -0.02 3.22 16 29 H 0.07 2.09 8.12 -2.39 -0.02 2.07 16 30 H 0.39 15.66 5.76 -92.70 -0.53 15.12 16 31 H 0.28 15.56 8.31 -92.71 -0.77 14.79 16 32 H 0.08 1.81 7.93 -2.39 -0.02 1.79 16 33 H 0.04 1.02 7.52 -2.39 -0.02 1.00 16 34 H 0.05 1.57 7.75 -2.39 -0.02 1.55 16 35 H 0.07 1.36 8.14 -2.39 -0.02 1.34 16 36 H 0.05 1.04 8.14 -2.39 -0.02 1.02 16 37 H 0.07 1.15 8.14 -2.39 -0.02 1.13 16 38 H 0.07 0.85 8.14 -2.39 -0.02 0.83 16 39 H 0.07 0.83 8.14 -2.39 -0.02 0.81 16 40 H 0.08 0.76 8.14 -2.39 -0.02 0.74 16 41 H 0.06 0.92 8.14 -2.39 -0.02 0.90 16 42 H 0.39 3.03 9.08 -74.06 -0.67 2.35 16 Total: -1.00 -76.81 328.59 -0.47 -77.28 By element: Atomic # 1 Polarization: 33.46 SS G_CDS: -0.25 Total: 33.21 kcal Atomic # 6 Polarization: -2.42 SS G_CDS: 4.71 Total: 2.29 kcal Atomic # 7 Polarization: -103.26 SS G_CDS: -4.93 Total: -108.18 kcal Atomic # 8 Polarization: -44.04 SS G_CDS: -1.91 Total: -45.95 kcal Atomic # 14 Polarization: 39.45 SS G_CDS: 1.90 Total: 41.36 kcal Total: -76.81 -0.47 -77.28 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000305815097.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.437 kcal (2) G-P(sol) polarization free energy of solvation -76.806 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.244 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.473 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.280 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.717 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds