Wall clock time and date at job start Mon Mar 30 2020 01:23:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 C 1.46502 * 120.00353 * 2 1 4 4 C 1.53003 * 109.47430 * 270.00385 * 3 2 1 5 5 H 1.08997 * 109.47658 * 60.01755 * 4 3 2 6 6 C 1.53086 * 109.48141 * 180.02562 * 4 3 2 7 7 C 1.53184 * 109.16312 * 177.59171 * 6 4 3 8 8 C 1.53178 * 109.03370 * 303.01704 * 7 6 4 9 9 C 1.53096 * 109.16334 * 56.97961 * 8 7 6 10 10 O 1.42903 * 109.41695 * 302.39000 * 9 8 7 11 11 C 1.37341 * 120.00114 * 180.02562 * 2 1 3 12 12 O 1.35091 * 120.00352 * 179.97438 * 11 2 1 13 13 N 1.30100 * 119.99737 * 359.97438 * 11 2 1 14 14 C 1.46496 * 119.99902 * 179.97438 * 13 11 2 15 15 C 1.53006 * 109.46995 * 115.00369 * 14 13 11 16 16 C 1.50698 * 109.47184 * 180.02562 * 15 14 13 17 17 H 1.08005 * 119.99819 * 359.97438 * 16 15 14 18 18 C 1.37875 * 120.00046 * 180.02562 * 16 15 14 19 19 N 1.31511 * 120.00192 * 359.97438 * 18 16 15 20 20 Si 1.86798 * 119.99979 * 179.97438 * 18 16 15 21 21 H 1.48500 * 109.47454 * 59.99696 * 20 18 16 22 22 H 1.48506 * 109.47297 * 179.97438 * 20 18 16 23 23 H 1.48503 * 109.47261 * 299.99689 * 20 18 16 24 24 H 1.09001 * 109.46645 * 270.00261 * 1 2 3 25 25 H 1.09006 * 109.47149 * 29.99669 * 1 2 3 26 26 H 1.08990 * 109.47441 * 149.99744 * 1 2 3 27 27 H 1.09005 * 109.46677 * 30.00114 * 3 2 1 28 28 H 1.09003 * 109.47605 * 150.00137 * 3 2 1 29 29 H 1.09000 * 109.52359 * 297.49717 * 6 4 3 30 30 H 1.09000 * 109.52526 * 57.68496 * 6 4 3 31 31 H 1.08998 * 109.54138 * 183.15609 * 7 6 4 32 32 H 1.08998 * 109.61695 * 62.92764 * 7 6 4 33 33 H 1.09000 * 109.52767 * 297.07964 * 8 7 6 34 34 H 1.09000 * 109.52338 * 176.88633 * 8 7 6 35 35 H 1.08997 * 109.48448 * 182.40316 * 9 8 7 36 36 H 1.09001 * 109.48108 * 62.37245 * 9 8 7 37 37 H 0.96708 * 114.00042 * 0.02562 * 12 11 2 38 38 H 1.09001 * 109.47464 * 355.00630 * 14 13 11 39 39 H 1.09001 * 109.47459 * 235.00345 * 14 13 11 40 40 H 1.09001 * 109.47002 * 299.99701 * 15 14 13 41 41 H 1.08993 * 109.46955 * 60.00138 * 15 14 13 42 42 H 0.96996 * 120.00505 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4525 1.7105 -1.4425 5 1 1.5002 1.8412 -1.9563 6 6 3.2186 3.0359 -1.4427 7 6 3.5225 3.4408 -2.8884 8 6 4.3083 2.3151 -3.5678 9 6 3.5001 1.0174 -3.4855 10 8 3.2254 0.7149 -2.1162 11 6 2.1517 -1.1894 -0.0005 12 8 3.5026 -1.1894 -0.0011 13 7 1.5011 -2.3161 -0.0005 14 6 2.2336 -3.5848 -0.0017 15 6 1.9616 -4.3319 1.3056 16 6 2.7155 -5.6367 1.3047 17 1 3.3272 -5.9063 0.4564 18 6 2.6236 -6.4867 2.3864 19 7 1.8784 -6.1586 3.4191 20 14 3.5576 -8.1044 2.3850 21 1 5.0130 -7.8357 2.2625 22 1 3.2937 -8.8295 3.6538 23 1 3.1092 -8.9340 1.2378 24 1 -0.3633 0.0000 1.0277 25 1 -0.3634 0.8901 -0.5138 26 1 -0.3634 -0.8899 -0.5138 27 1 1.6084 2.0284 0.5139 28 1 3.1500 1.1384 0.5138 29 1 2.6120 3.8073 -0.9682 30 1 4.1527 2.9168 -0.8937 31 1 4.1164 4.3547 -2.8939 32 1 2.5889 3.6093 -3.4252 33 1 5.2644 2.1813 -3.0618 34 1 4.4811 2.5709 -4.6132 35 1 4.0731 0.2035 -3.9297 36 1 2.5616 1.1387 -4.0263 37 1 3.8960 -0.3060 -0.0006 38 1 3.3018 -3.3876 -0.0919 39 1 1.9042 -4.1938 -0.8435 40 1 2.2910 -3.7229 2.1474 41 1 0.8934 -4.5291 1.3958 42 1 1.8134 -6.7567 4.1799 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000330818772.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:23:54 Heat of formation + Delta-G solvation = -73.268053 kcal Electronic energy + Delta-G solvation = -21355.305139 eV Core-core repulsion = 18142.686929 eV Total energy + Delta-G solvation = -3212.618210 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 270.173 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.05102 -38.70431 -35.54480 -34.26563 -33.92444 -32.67991 -31.79178 -29.13615 -27.72385 -26.08734 -24.68777 -23.82550 -22.43828 -20.63056 -20.51219 -19.63715 -18.10242 -16.67035 -16.43568 -16.20741 -15.52298 -15.16369 -14.86074 -14.48268 -14.30093 -14.09331 -13.50620 -13.29554 -13.02330 -12.99364 -12.77381 -12.56238 -12.28861 -12.02836 -11.74472 -11.56358 -11.41833 -11.18434 -11.16033 -10.84229 -10.66303 -10.57398 -10.02808 -9.71204 -9.66990 -9.13313 -9.03018 -8.43015 -8.13801 -7.24873 -5.83160 -3.84850 3.00812 3.36917 3.44080 3.46820 3.50364 3.58765 4.34368 4.42590 4.45217 4.51831 4.59356 4.61591 4.75406 4.89365 4.99697 5.13778 5.23531 5.32601 5.39763 5.41151 5.50778 5.51704 5.56191 5.65503 5.74535 5.83632 5.89694 5.95015 6.12552 6.76990 6.81176 6.97093 7.02005 7.23316 7.34059 7.90657 8.09007 8.22162 8.42362 8.62317 9.07836 9.23935 9.77368 11.28338 Molecular weight = 270.17amu Principal moments of inertia in cm(-1) A = 0.032970 B = 0.003580 C = 0.003375 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 849.043014 B = 7818.506366 C = 8294.158931 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.116 3.884 2 N -0.627 5.627 3 C 0.126 3.874 4 C 0.065 3.935 5 H 0.062 0.938 6 C -0.150 4.150 7 C -0.121 4.121 8 C -0.157 4.157 9 C 0.065 3.935 10 O -0.370 6.370 11 C 0.546 3.454 12 O -0.501 6.501 13 N -0.593 5.593 14 C 0.079 3.921 15 C 0.033 3.967 16 C -0.516 4.516 17 H 0.054 0.946 18 C 0.056 3.944 19 N -0.897 5.897 20 Si 0.892 3.108 21 H -0.278 1.278 22 H -0.288 1.288 23 H -0.277 1.277 24 H 0.047 0.953 25 H 0.053 0.947 26 H 0.083 0.917 27 H 0.099 0.901 28 H 0.077 0.923 29 H 0.074 0.926 30 H 0.074 0.926 31 H 0.066 0.934 32 H 0.062 0.938 33 H 0.072 0.928 34 H 0.071 0.929 35 H 0.094 0.906 36 H 0.048 0.952 37 H 0.382 0.618 38 H 0.035 0.965 39 H 0.055 0.945 40 H 0.010 0.990 41 H 0.020 0.980 42 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.731 24.581 -12.279 27.531 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.027 4.027 2 N -0.358 5.358 3 C 0.001 3.999 4 C 0.005 3.995 5 H 0.080 0.920 6 C -0.188 4.188 7 C -0.158 4.158 8 C -0.195 4.195 9 C -0.012 4.012 10 O -0.289 6.289 11 C 0.234 3.766 12 O -0.294 6.294 13 N -0.339 5.339 14 C -0.050 4.050 15 C -0.005 4.005 16 C -0.555 4.555 17 H 0.072 0.928 18 C -0.145 4.145 19 N -0.536 5.536 20 Si 0.720 3.280 21 H -0.203 1.203 22 H -0.214 1.214 23 H -0.203 1.203 24 H 0.066 0.934 25 H 0.072 0.928 26 H 0.102 0.898 27 H 0.117 0.883 28 H 0.095 0.905 29 H 0.093 0.907 30 H 0.093 0.907 31 H 0.085 0.915 32 H 0.081 0.919 33 H 0.091 0.909 34 H 0.090 0.910 35 H 0.112 0.888 36 H 0.066 0.934 37 H 0.236 0.764 38 H 0.053 0.947 39 H 0.074 0.926 40 H 0.028 0.972 41 H 0.038 0.962 42 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 1.012 23.402 -12.000 26.319 hybrid contribution 1.446 0.057 -0.138 1.454 sum 2.458 23.459 -12.138 26.528 Atomic orbital electron populations 1.21405 0.77667 1.02340 1.01294 1.45964 1.06253 1.01556 1.82068 1.21459 0.97809 0.86637 0.93954 1.22762 0.94147 0.87997 0.94557 0.91964 1.22174 1.01608 0.97377 0.97654 1.21557 1.00410 0.98308 0.95560 1.22210 1.00023 0.95914 1.01337 1.22525 0.98560 0.97052 0.83084 1.87975 1.72889 1.44285 1.23737 1.20612 0.77565 0.87799 0.90657 1.85254 1.18561 1.34853 1.90715 1.72596 1.32570 0.96888 1.31884 1.21807 0.95170 0.87561 1.00485 1.19045 0.97167 0.93579 0.90659 1.21232 1.28142 1.03546 1.02574 0.92819 1.25009 0.95634 0.98213 0.95638 1.69982 1.39727 1.37105 1.06821 0.86659 0.80345 0.83862 0.77101 1.20331 1.21377 1.20254 0.93442 0.92818 0.89846 0.88281 0.90521 0.90695 0.90737 0.91480 0.91908 0.90946 0.91028 0.88807 0.93402 0.76379 0.94661 0.92623 0.97203 0.96209 0.93138 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.12 1.44 10.44 59.84 0.62 2.06 16 2 N -0.63 -8.68 2.89 -184.19 -0.53 -9.21 16 3 C 0.13 1.15 5.01 -4.04 -0.02 1.13 16 4 C 0.07 0.55 2.92 -26.69 -0.08 0.48 16 5 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 6 C -0.15 -0.92 5.42 -26.59 -0.14 -1.06 16 7 C -0.12 -0.72 6.03 -26.54 -0.16 -0.88 16 8 C -0.16 -1.06 6.14 -26.59 -0.16 -1.23 16 9 C 0.06 0.57 6.84 37.21 0.25 0.83 16 10 O -0.37 -4.13 8.50 -41.56 -0.35 -4.48 16 11 C 0.55 10.32 7.99 -88.57 -0.71 9.62 16 12 O -0.50 -9.16 11.56 -23.31 -0.27 -9.43 16 13 N -0.59 -13.57 9.30 -62.52 -0.58 -14.16 16 14 C 0.08 2.03 6.27 -4.04 -0.03 2.00 16 15 C 0.03 0.99 5.30 -27.88 -0.15 0.84 16 16 C -0.52 -16.06 9.11 -34.44 -0.31 -16.37 16 17 H 0.05 1.61 7.74 -52.48 -0.41 1.21 16 18 C 0.06 1.72 5.46 -17.82 -0.10 1.62 16 19 N -0.90 -28.86 13.29 55.43 0.74 -28.13 16 20 Si 0.89 22.99 29.54 -169.99 -5.02 17.97 16 21 H -0.28 -7.00 7.11 56.52 0.40 -6.60 16 22 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 23 H -0.28 -6.97 7.11 56.52 0.40 -6.57 16 24 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 25 H 0.05 0.48 8.07 -51.93 -0.42 0.06 16 26 H 0.08 1.24 7.36 -51.93 -0.38 0.86 16 27 H 0.10 0.64 8.07 -51.93 -0.42 0.22 16 28 H 0.08 0.66 6.34 -51.93 -0.33 0.33 16 29 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 30 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 31 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 32 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 33 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 34 H 0.07 0.41 8.14 -51.93 -0.42 -0.02 16 35 H 0.09 0.84 8.14 -51.93 -0.42 0.42 16 36 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 37 H 0.38 5.17 5.54 45.56 0.25 5.42 16 38 H 0.03 0.91 6.74 -51.93 -0.35 0.56 16 39 H 0.06 1.42 8.14 -51.93 -0.42 1.00 16 40 H 0.01 0.31 8.14 -51.93 -0.42 -0.12 16 41 H 0.02 0.62 8.14 -51.93 -0.42 0.20 16 42 H 0.26 7.81 8.31 -40.82 -0.34 7.47 16 LS Contribution 337.33 15.07 5.08 5.08 Total: -1.00 -36.94 337.33 -8.60 -45.54 By element: Atomic # 1 Polarization: 4.46 SS G_CDS: -6.68 Total: -2.22 kcal Atomic # 6 Polarization: 0.02 SS G_CDS: -0.98 Total: -0.96 kcal Atomic # 7 Polarization: -51.11 SS G_CDS: -0.38 Total: -51.49 kcal Atomic # 8 Polarization: -13.29 SS G_CDS: -0.62 Total: -13.91 kcal Atomic # 14 Polarization: 22.99 SS G_CDS: -5.02 Total: 17.97 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -36.94 -8.60 -45.54 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330818772.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.732 kcal (2) G-P(sol) polarization free energy of solvation -36.937 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.668 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.600 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.536 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.268 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds