Wall clock time and date at job start Mon Mar 30 2020 01:23:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 C 1.46502 * 120.00353 * 2 1 4 4 C 1.53003 * 109.47430 * 270.00385 * 3 2 1 5 5 H 1.08997 * 109.47658 * 60.01755 * 4 3 2 6 6 C 1.53086 * 109.48141 * 180.02562 * 4 3 2 7 7 C 1.53184 * 109.16312 * 177.59171 * 6 4 3 8 8 C 1.53178 * 109.03370 * 303.01704 * 7 6 4 9 9 C 1.53096 * 109.16334 * 56.97961 * 8 7 6 10 10 O 1.42903 * 109.41695 * 302.39000 * 9 8 7 11 11 C 1.37341 * 120.00114 * 180.02562 * 2 1 3 12 12 O 1.35091 * 120.00352 * 179.97438 * 11 2 1 13 13 N 1.30100 * 119.99737 * 359.97438 * 11 2 1 14 14 C 1.46496 * 119.99902 * 179.97438 * 13 11 2 15 15 C 1.53006 * 109.46995 * 115.00369 * 14 13 11 16 16 C 1.50698 * 109.47184 * 180.02562 * 15 14 13 17 17 H 1.08005 * 119.99819 * 359.97438 * 16 15 14 18 18 C 1.37875 * 120.00046 * 180.02562 * 16 15 14 19 19 N 1.31511 * 120.00192 * 359.97438 * 18 16 15 20 20 Si 1.86798 * 119.99979 * 179.97438 * 18 16 15 21 21 H 1.48500 * 109.47454 * 59.99696 * 20 18 16 22 22 H 1.48506 * 109.47297 * 179.97438 * 20 18 16 23 23 H 1.48503 * 109.47261 * 299.99689 * 20 18 16 24 24 H 1.09001 * 109.46645 * 270.00261 * 1 2 3 25 25 H 1.09006 * 109.47149 * 29.99669 * 1 2 3 26 26 H 1.08990 * 109.47441 * 149.99744 * 1 2 3 27 27 H 1.09005 * 109.46677 * 30.00114 * 3 2 1 28 28 H 1.09003 * 109.47605 * 150.00137 * 3 2 1 29 29 H 1.09000 * 109.52359 * 297.49717 * 6 4 3 30 30 H 1.09000 * 109.52526 * 57.68496 * 6 4 3 31 31 H 1.08998 * 109.54138 * 183.15609 * 7 6 4 32 32 H 1.08998 * 109.61695 * 62.92764 * 7 6 4 33 33 H 1.09000 * 109.52767 * 297.07964 * 8 7 6 34 34 H 1.09000 * 109.52338 * 176.88633 * 8 7 6 35 35 H 1.08997 * 109.48448 * 182.40316 * 9 8 7 36 36 H 1.09001 * 109.48108 * 62.37245 * 9 8 7 37 37 H 0.96708 * 114.00042 * 0.02562 * 12 11 2 38 38 H 1.09001 * 109.47464 * 355.00630 * 14 13 11 39 39 H 1.09001 * 109.47459 * 235.00345 * 14 13 11 40 40 H 1.09001 * 109.47002 * 299.99701 * 15 14 13 41 41 H 1.08993 * 109.46955 * 60.00138 * 15 14 13 42 42 H 0.96996 * 120.00505 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4525 1.7105 -1.4425 5 1 1.5002 1.8412 -1.9563 6 6 3.2186 3.0359 -1.4427 7 6 3.5225 3.4408 -2.8884 8 6 4.3083 2.3151 -3.5678 9 6 3.5001 1.0174 -3.4855 10 8 3.2254 0.7149 -2.1162 11 6 2.1517 -1.1894 -0.0005 12 8 3.5026 -1.1894 -0.0011 13 7 1.5011 -2.3161 -0.0005 14 6 2.2336 -3.5848 -0.0017 15 6 1.9616 -4.3319 1.3056 16 6 2.7155 -5.6367 1.3047 17 1 3.3272 -5.9063 0.4564 18 6 2.6236 -6.4867 2.3864 19 7 1.8784 -6.1586 3.4191 20 14 3.5576 -8.1044 2.3850 21 1 5.0130 -7.8357 2.2625 22 1 3.2937 -8.8295 3.6538 23 1 3.1092 -8.9340 1.2378 24 1 -0.3633 0.0000 1.0277 25 1 -0.3634 0.8901 -0.5138 26 1 -0.3634 -0.8899 -0.5138 27 1 1.6084 2.0284 0.5139 28 1 3.1500 1.1384 0.5138 29 1 2.6120 3.8073 -0.9682 30 1 4.1527 2.9168 -0.8937 31 1 4.1164 4.3547 -2.8939 32 1 2.5889 3.6093 -3.4252 33 1 5.2644 2.1813 -3.0618 34 1 4.4811 2.5709 -4.6132 35 1 4.0731 0.2035 -3.9297 36 1 2.5616 1.1387 -4.0263 37 1 3.8960 -0.3060 -0.0006 38 1 3.3018 -3.3876 -0.0919 39 1 1.9042 -4.1938 -0.8435 40 1 2.2910 -3.7229 2.1474 41 1 0.8934 -4.5291 1.3958 42 1 1.8134 -6.7567 4.1799 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000330818772.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:23:54 Heat of formation + Delta-G solvation = -101.530955 kcal Electronic energy + Delta-G solvation = -21356.530710 eV Core-core repulsion = 18142.686929 eV Total energy + Delta-G solvation = -3213.843782 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 270.173 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.00289 -39.83428 -36.74391 -36.24241 -34.61300 -34.51867 -32.87326 -31.06114 -28.59488 -27.48635 -26.13041 -24.86000 -23.50549 -22.31563 -21.30717 -21.10236 -19.34240 -18.59988 -17.44063 -17.14760 -16.82507 -16.53884 -16.06530 -15.70141 -15.41285 -15.26341 -14.87650 -14.58674 -14.29144 -14.26428 -13.94980 -13.59029 -13.47106 -13.32324 -13.07745 -12.89481 -12.68781 -12.55643 -12.18691 -12.15368 -11.95537 -11.78030 -11.72757 -11.37703 -11.28542 -10.63266 -10.59601 -10.35355 -10.18219 -8.74891 -8.19331 -6.33512 1.38134 1.44155 1.51928 1.84939 1.91103 2.41786 2.82464 3.11222 3.16674 3.76141 3.87469 3.95473 3.97756 4.07365 4.22945 4.30782 4.40059 4.46859 4.54458 4.65430 4.69586 4.75335 4.82727 4.88429 4.90514 4.97509 5.09933 5.11047 5.13353 5.17128 5.21062 5.42121 5.44864 5.65169 5.67929 5.79473 5.98909 6.24079 6.34347 6.81362 7.06516 7.34538 7.49640 8.92594 Molecular weight = 270.17amu Principal moments of inertia in cm(-1) A = 0.032970 B = 0.003580 C = 0.003375 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 849.043014 B = 7818.506366 C = 8294.158931 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.112 3.888 2 N -0.618 5.618 3 C 0.117 3.883 4 C 0.066 3.934 5 H 0.063 0.937 6 C -0.143 4.143 7 C -0.120 4.120 8 C -0.152 4.152 9 C 0.060 3.940 10 O -0.402 6.402 11 C 0.561 3.439 12 O -0.514 6.514 13 N -0.641 5.641 14 C 0.100 3.900 15 C 0.047 3.953 16 C -0.548 4.548 17 H 0.060 0.940 18 C -0.002 4.002 19 N -0.935 5.935 20 Si 0.976 3.024 21 H -0.265 1.265 22 H -0.278 1.278 23 H -0.264 1.264 24 H 0.047 0.953 25 H 0.098 0.902 26 H 0.054 0.946 27 H 0.137 0.863 28 H 0.083 0.917 29 H 0.097 0.903 30 H 0.074 0.926 31 H 0.079 0.921 32 H 0.066 0.934 33 H 0.066 0.934 34 H 0.082 0.918 35 H 0.084 0.916 36 H 0.049 0.951 37 H 0.401 0.599 38 H 0.026 0.974 39 H 0.049 0.951 40 H -0.025 1.025 41 H -0.013 1.013 42 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.558 26.292 -12.765 29.339 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.030 4.030 2 N -0.348 5.348 3 C -0.005 4.005 4 C 0.007 3.993 5 H 0.081 0.919 6 C -0.181 4.181 7 C -0.158 4.158 8 C -0.190 4.190 9 C -0.017 4.017 10 O -0.322 6.322 11 C 0.249 3.751 12 O -0.310 6.310 13 N -0.391 5.391 14 C -0.030 4.030 15 C 0.009 3.991 16 C -0.587 4.587 17 H 0.078 0.922 18 C -0.200 4.200 19 N -0.575 5.575 20 Si 0.799 3.201 21 H -0.190 1.190 22 H -0.203 1.203 23 H -0.189 1.189 24 H 0.066 0.934 25 H 0.117 0.883 26 H 0.073 0.927 27 H 0.155 0.845 28 H 0.101 0.899 29 H 0.115 0.885 30 H 0.093 0.907 31 H 0.098 0.902 32 H 0.085 0.915 33 H 0.085 0.915 34 H 0.101 0.899 35 H 0.102 0.898 36 H 0.067 0.933 37 H 0.259 0.741 38 H 0.045 0.955 39 H 0.067 0.933 40 H -0.006 1.006 41 H 0.005 0.995 42 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 1.849 25.211 -12.505 28.202 hybrid contribution 1.182 -0.276 0.015 1.214 sum 3.030 24.935 -12.490 28.052 Atomic orbital electron populations 1.21530 0.76760 1.03144 1.01573 1.46298 1.07023 1.01375 1.80132 1.21938 0.98324 0.85024 0.95206 1.22814 0.94384 0.88629 0.93497 0.91862 1.22137 1.01610 0.96349 0.98036 1.21578 1.00635 0.98252 0.95315 1.22160 0.99450 0.95153 1.02203 1.22599 0.98882 0.97957 0.82225 1.87923 1.73485 1.45956 1.24792 1.20821 0.77941 0.88650 0.87647 1.85201 1.18524 1.36995 1.90262 1.72558 1.32488 0.96799 1.37299 1.21312 0.94730 0.89255 0.97669 1.18848 0.94749 0.93708 0.91811 1.21610 1.29065 1.04524 1.03453 0.92210 1.26098 0.96381 1.02746 0.94742 1.70132 1.40850 1.38911 1.07567 0.85358 0.78959 0.78003 0.77819 1.19002 1.20269 1.18871 0.93403 0.88319 0.92733 0.84517 0.89898 0.88456 0.90737 0.90192 0.91517 0.91518 0.89918 0.89791 0.93299 0.74076 0.95528 0.93315 1.00638 0.99489 0.92608 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 2.64 10.44 127.77 1.33 3.98 16 2 N -0.62 -16.30 2.89 -847.12 -2.45 -18.75 16 3 C 0.12 1.80 5.01 86.38 0.43 2.24 16 4 C 0.07 0.95 2.92 30.62 0.09 1.04 16 5 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 6 C -0.14 -1.27 5.42 30.68 0.17 -1.10 16 7 C -0.12 -1.08 6.03 30.72 0.19 -0.89 16 8 C -0.15 -1.79 6.14 30.69 0.19 -1.60 16 9 C 0.06 1.02 6.84 72.01 0.49 1.51 16 10 O -0.40 -8.52 8.50 -142.93 -1.22 -9.74 16 11 C 0.56 21.42 7.99 179.63 1.43 22.85 16 12 O -0.51 -18.86 11.56 -77.61 -0.90 -19.76 16 13 N -0.64 -30.55 9.30 -465.98 -4.33 -34.88 16 14 C 0.10 5.43 6.27 86.38 0.54 5.97 16 15 C 0.05 2.94 5.30 29.85 0.16 3.10 16 16 C -0.55 -35.14 9.11 25.60 0.23 -34.91 16 17 H 0.06 3.66 7.74 -2.91 -0.02 3.64 16 18 C 0.00 -0.14 5.46 84.65 0.46 0.33 16 19 N -0.93 -61.50 13.29 21.45 0.28 -61.22 16 20 Si 0.98 47.39 29.54 68.60 2.03 49.42 16 21 H -0.27 -12.31 7.11 99.48 0.71 -11.60 16 22 H -0.28 -12.92 7.11 99.48 0.71 -12.22 16 23 H -0.26 -12.23 7.11 99.48 0.71 -11.53 16 24 H 0.05 1.14 8.14 -2.39 -0.02 1.12 16 25 H 0.10 1.44 8.07 -2.38 -0.02 1.42 16 26 H 0.05 1.64 7.36 -2.39 -0.02 1.62 16 27 H 0.14 1.15 8.07 -2.38 -0.02 1.13 16 28 H 0.08 1.20 6.34 -2.39 -0.02 1.18 16 29 H 0.10 0.47 8.14 -2.39 -0.02 0.45 16 30 H 0.07 0.69 8.14 -2.39 -0.02 0.67 16 31 H 0.08 0.55 8.14 -2.39 -0.02 0.53 16 32 H 0.07 0.57 8.14 -2.39 -0.02 0.55 16 33 H 0.07 0.87 8.14 -2.39 -0.02 0.85 16 34 H 0.08 0.78 8.14 -2.39 -0.02 0.76 16 35 H 0.08 1.53 8.14 -2.39 -0.02 1.51 16 36 H 0.05 0.79 8.14 -2.39 -0.02 0.77 16 37 H 0.40 10.53 5.54 -74.05 -0.41 10.12 16 38 H 0.03 1.43 6.74 -2.39 -0.02 1.41 16 39 H 0.05 2.61 8.14 -2.39 -0.02 2.59 16 40 H -0.02 -1.70 8.14 -2.39 -0.02 -1.72 16 41 H -0.01 -0.91 8.14 -2.39 -0.02 -0.93 16 42 H 0.27 16.17 8.31 -92.71 -0.77 15.40 16 Total: -1.00 -83.50 337.33 -0.29 -83.79 By element: Atomic # 1 Polarization: 8.06 SS G_CDS: 0.58 Total: 8.64 kcal Atomic # 6 Polarization: -3.22 SS G_CDS: 5.72 Total: 2.50 kcal Atomic # 7 Polarization: -108.35 SS G_CDS: -6.50 Total: -114.85 kcal Atomic # 8 Polarization: -27.38 SS G_CDS: -2.11 Total: -29.49 kcal Atomic # 14 Polarization: 47.39 SS G_CDS: 2.03 Total: 49.42 kcal Total: -83.50 -0.29 -83.79 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330818772.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.744 kcal (2) G-P(sol) polarization free energy of solvation -83.500 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.244 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.287 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.787 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.531 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds