Wall clock time and date at job start Mon Mar 30 2020 01:23:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.46497 * 120.00166 * 2 1 4 4 C 1.53000 * 109.46868 * 269.99717 * 3 2 1 5 5 H 1.09004 * 109.48539 * 305.02549 * 4 3 2 6 6 C 1.53086 * 109.48346 * 185.00023 * 4 3 2 7 7 C 1.53183 * 109.16872 * 182.41009 * 6 4 3 8 8 C 1.53179 * 109.03458 * 56.97871 * 7 6 4 9 9 C 1.53097 * 109.16282 * 303.02528 * 8 7 6 10 10 O 1.42896 * 109.41713 * 57.60974 * 9 8 7 11 11 C 1.37342 * 119.99669 * 179.97438 * 2 1 3 12 12 O 1.35100 * 119.99769 * 179.97438 * 11 2 1 13 13 N 1.30098 * 120.00231 * 0.02562 * 11 2 1 14 14 C 1.46499 * 120.00109 * 179.97438 * 13 11 2 15 15 C 1.53002 * 109.47337 * 114.99373 * 14 13 11 16 16 C 1.50696 * 109.46997 * 179.97438 * 15 14 13 17 17 H 1.07999 * 120.00319 * 0.02562 * 16 15 14 18 18 C 1.37885 * 119.99717 * 180.02562 * 16 15 14 19 19 N 1.31516 * 119.99913 * 180.02562 * 18 16 15 20 20 Si 1.86798 * 119.99766 * 0.02562 * 18 16 15 21 21 H 1.48500 * 109.47353 * 269.99586 * 20 18 16 22 22 H 1.48501 * 109.47293 * 30.00037 * 20 18 16 23 23 H 1.48504 * 109.46680 * 149.99835 * 20 18 16 24 24 H 1.09006 * 109.47273 * 270.00282 * 1 2 3 25 25 H 1.08994 * 109.47157 * 30.00328 * 1 2 3 26 26 H 1.09001 * 109.47641 * 150.00590 * 1 2 3 27 27 H 1.08994 * 109.47396 * 29.99925 * 3 2 1 28 28 H 1.08998 * 109.47267 * 150.00493 * 3 2 1 29 29 H 1.09005 * 109.52258 * 302.31372 * 6 4 3 30 30 H 1.08997 * 109.52652 * 62.43925 * 6 4 3 31 31 H 1.08993 * 109.54359 * 176.84668 * 7 6 4 32 32 H 1.08997 * 109.53908 * 297.11377 * 7 6 4 33 33 H 1.09000 * 109.51958 * 62.92442 * 8 7 6 34 34 H 1.08993 * 109.52228 * 183.05470 * 8 7 6 35 35 H 1.09005 * 109.47920 * 177.59316 * 9 8 7 36 36 H 1.09001 * 109.47465 * 297.62427 * 9 8 7 37 37 H 0.96697 * 113.99833 * 0.02562 * 12 11 2 38 38 H 1.09005 * 109.47136 * 354.99668 * 14 13 11 39 39 H 1.09002 * 109.47352 * 234.99636 * 14 13 11 40 40 H 1.09005 * 109.46767 * 60.00068 * 15 14 13 41 41 H 1.09002 * 109.47113 * 300.00408 * 15 14 13 42 42 H 0.97001 * 119.99646 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4525 1.7103 -1.4425 5 1 2.9639 0.9129 -1.9819 6 6 3.3244 2.9686 -1.4447 7 6 3.5252 3.4389 -2.8887 8 6 2.1554 3.6795 -3.5308 9 6 1.3287 2.3936 -3.4480 10 8 1.2062 1.9948 -2.0813 11 6 2.1516 -1.1895 0.0005 12 8 3.5026 -1.1895 0.0000 13 7 1.5011 -2.3161 0.0005 14 6 2.2336 -3.5849 0.0005 15 6 1.9607 -4.3313 1.3079 16 6 2.7137 -5.6367 1.3076 17 1 3.3260 -5.9067 0.4599 18 6 2.6209 -6.4863 2.3896 19 7 3.2785 -7.6253 2.3896 20 14 1.5614 -6.0195 3.8555 21 1 2.3793 -5.2616 4.8362 22 1 0.4283 -5.1753 3.3985 23 1 1.0341 -7.2506 4.4971 24 1 -0.3634 0.0001 1.0277 25 1 -0.3633 0.8899 -0.5139 26 1 -0.3634 -0.8900 -0.5137 27 1 1.6085 2.0283 0.5138 28 1 3.1499 1.1383 0.5137 29 1 2.8320 3.7539 -0.8711 30 1 4.2918 2.7423 -0.9966 31 1 4.0982 4.3659 -2.8939 32 1 4.0616 2.6738 -3.4500 33 1 1.6394 4.4791 -2.9992 34 1 2.2873 3.9622 -4.5751 35 1 0.3374 2.5713 -3.8651 36 1 1.8253 1.6052 -4.0137 37 1 3.8959 -0.3061 -0.0003 38 1 3.3019 -3.3877 -0.0891 39 1 1.9047 -4.1943 -0.8412 40 1 0.8924 -4.5285 1.3976 41 1 2.2896 -3.7219 2.1497 42 1 3.2135 -8.2228 3.1509 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000330818773.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:23:55 Heat of formation + Delta-G solvation = -99.153804 kcal Electronic energy + Delta-G solvation = -21191.424608 eV Core-core repulsion = 17977.683907 eV Total energy + Delta-G solvation = -3213.740701 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 270.173 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.05559 -39.94459 -36.75986 -36.33666 -34.65843 -34.51884 -32.98514 -31.46505 -28.68684 -27.55218 -25.97642 -24.91892 -23.40463 -22.21283 -21.39798 -21.15827 -19.46868 -18.98275 -17.31754 -17.17951 -17.00126 -16.42780 -16.12058 -15.75763 -15.38444 -15.32192 -14.95132 -14.76928 -14.64521 -14.31990 -13.96989 -13.63970 -13.54986 -13.33721 -13.10627 -13.02749 -12.71887 -12.42125 -12.19216 -11.98963 -11.91592 -11.85769 -11.74790 -11.50416 -11.29402 -10.80703 -10.75082 -10.35352 -10.25422 -8.80396 -8.32211 -6.36476 1.32012 1.35013 1.49817 1.78138 1.78337 2.35174 2.78643 3.00869 3.02684 3.73766 3.85873 3.93476 3.95392 4.06516 4.16983 4.29068 4.31553 4.47713 4.55284 4.61008 4.69199 4.73017 4.74828 4.86380 4.89625 4.96105 5.01247 5.06177 5.14663 5.15791 5.20886 5.32954 5.40164 5.47431 5.59291 5.65137 5.94898 6.25474 6.29630 6.68937 6.97355 7.26832 7.40009 8.84632 Molecular weight = 270.17amu Principal moments of inertia in cm(-1) A = 0.039411 B = 0.003439 C = 0.003370 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 710.285111 B = 8140.719393 C = 8307.078029 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.119 3.881 2 N -0.614 5.614 3 C 0.118 3.882 4 C 0.069 3.931 5 H 0.043 0.957 6 C -0.145 4.145 7 C -0.125 4.125 8 C -0.152 4.152 9 C 0.055 3.945 10 O -0.388 6.388 11 C 0.550 3.450 12 O -0.517 6.517 13 N -0.632 5.632 14 C 0.101 3.899 15 C 0.009 3.991 16 C -0.534 4.534 17 H 0.032 0.968 18 C 0.008 3.992 19 N -0.948 5.948 20 Si 0.954 3.046 21 H -0.265 1.265 22 H -0.256 1.256 23 H -0.275 1.275 24 H 0.047 0.953 25 H 0.090 0.910 26 H 0.055 0.945 27 H 0.115 0.885 28 H 0.111 0.889 29 H 0.082 0.918 30 H 0.092 0.908 31 H 0.080 0.920 32 H 0.058 0.942 33 H 0.073 0.927 34 H 0.081 0.919 35 H 0.100 0.900 36 H 0.039 0.961 37 H 0.405 0.595 38 H 0.029 0.971 39 H 0.049 0.951 40 H 0.015 0.985 41 H 0.004 0.996 42 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.069 31.368 -8.927 32.679 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.023 4.023 2 N -0.343 5.343 3 C -0.005 4.005 4 C 0.010 3.990 5 H 0.061 0.939 6 C -0.183 4.183 7 C -0.163 4.163 8 C -0.190 4.190 9 C -0.021 4.021 10 O -0.307 6.307 11 C 0.238 3.762 12 O -0.314 6.314 13 N -0.382 5.382 14 C -0.029 4.029 15 C -0.029 4.029 16 C -0.573 4.573 17 H 0.051 0.949 18 C -0.189 4.189 19 N -0.589 5.589 20 Si 0.777 3.223 21 H -0.190 1.190 22 H -0.180 1.180 23 H -0.200 1.200 24 H 0.066 0.934 25 H 0.108 0.892 26 H 0.074 0.926 27 H 0.133 0.867 28 H 0.129 0.871 29 H 0.101 0.899 30 H 0.110 0.890 31 H 0.099 0.901 32 H 0.076 0.924 33 H 0.092 0.908 34 H 0.100 0.900 35 H 0.118 0.882 36 H 0.057 0.943 37 H 0.263 0.737 38 H 0.047 0.953 39 H 0.067 0.933 40 H 0.033 0.967 41 H 0.022 0.978 42 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -2.926 30.333 -8.736 31.701 hybrid contribution 1.087 -0.017 0.151 1.098 sum -1.838 30.316 -8.584 31.561 Atomic orbital electron populations 1.21461 0.76769 1.02959 1.01117 1.46335 1.07222 1.01126 1.79650 1.21873 0.99114 0.84433 0.95065 1.22763 0.85777 0.96576 0.93925 0.93882 1.22153 1.00807 0.97251 0.98083 1.21606 0.96993 1.02098 0.95560 1.22158 0.96461 0.98073 1.02260 1.22666 1.01511 0.95430 0.82514 1.87910 1.29496 1.87970 1.25357 1.20933 0.77977 0.88769 0.88513 1.85288 1.18295 1.37234 1.90550 1.72600 1.32289 0.96661 1.36694 1.21197 0.95050 0.89098 0.97519 1.19364 0.95888 0.93502 0.94138 1.21406 1.28630 1.03550 1.03701 0.94917 1.25978 0.96767 0.94450 1.01742 1.70059 1.44392 1.11818 1.32597 0.85599 0.79826 0.78221 0.78623 1.18992 1.17991 1.20029 0.93412 0.89187 0.92641 0.86721 0.87114 0.89904 0.88967 0.90115 0.92356 0.90816 0.90041 0.88240 0.94281 0.73663 0.95264 0.93272 0.96689 0.97814 0.92254 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.12 2.80 10.26 127.77 1.31 4.11 16 2 N -0.61 -14.62 2.91 -847.14 -2.46 -17.08 16 3 C 0.12 1.60 4.83 86.38 0.42 2.02 16 4 C 0.07 0.96 2.89 30.62 0.09 1.04 16 5 H 0.04 0.75 8.14 -2.38 -0.02 0.73 16 6 C -0.14 -1.23 5.42 30.68 0.17 -1.07 16 7 C -0.13 -1.13 6.03 30.72 0.19 -0.95 16 8 C -0.15 -1.48 6.14 30.69 0.19 -1.29 16 9 C 0.06 0.76 6.84 72.01 0.49 1.25 16 10 O -0.39 -6.68 9.23 -148.98 -1.38 -8.05 16 11 C 0.55 18.31 8.52 179.63 1.53 19.84 16 12 O -0.52 -15.57 11.99 -83.75 -1.00 -16.58 16 13 N -0.63 -26.98 9.30 -465.96 -4.33 -31.32 16 14 C 0.10 5.04 6.27 86.38 0.54 5.58 16 15 C 0.01 0.51 4.36 29.85 0.13 0.64 16 16 C -0.53 -34.11 9.66 25.60 0.25 -33.86 16 17 H 0.03 2.26 7.99 -2.91 -0.02 2.23 16 18 C 0.01 0.48 5.47 84.66 0.46 0.94 16 19 N -0.95 -62.45 13.96 21.45 0.30 -62.15 16 20 Si 0.95 48.07 27.47 68.60 1.88 49.95 16 21 H -0.26 -12.69 7.11 99.48 0.71 -11.99 16 22 H -0.26 -12.51 6.54 99.48 0.65 -11.86 16 23 H -0.28 -13.17 7.11 99.48 0.71 -12.46 16 24 H 0.05 1.08 8.14 -2.38 -0.02 1.06 16 25 H 0.09 1.71 7.12 -2.39 -0.02 1.69 16 26 H 0.05 1.61 7.36 -2.39 -0.02 1.59 16 27 H 0.11 1.21 8.07 -2.39 -0.02 1.19 16 28 H 0.11 0.95 6.34 -2.39 -0.02 0.93 16 29 H 0.08 0.62 8.14 -2.38 -0.02 0.60 16 30 H 0.09 0.50 8.14 -2.39 -0.02 0.48 16 31 H 0.08 0.55 8.14 -2.39 -0.02 0.54 16 32 H 0.06 0.60 8.14 -2.39 -0.02 0.58 16 33 H 0.07 0.70 8.14 -2.39 -0.02 0.68 16 34 H 0.08 0.63 8.14 -2.39 -0.02 0.62 16 35 H 0.10 1.19 8.14 -2.38 -0.02 1.17 16 36 H 0.04 0.60 8.14 -2.39 -0.02 0.58 16 37 H 0.41 6.88 6.35 -74.06 -0.47 6.41 16 38 H 0.03 1.46 6.74 -2.38 -0.02 1.45 16 39 H 0.05 2.50 8.14 -2.39 -0.02 2.48 16 40 H 0.01 0.83 7.20 -2.38 -0.02 0.81 16 41 H 0.00 0.19 7.57 -2.39 -0.02 0.18 16 42 H 0.27 16.32 8.31 -92.71 -0.77 15.55 16 Total: -1.00 -80.96 334.91 -0.76 -81.73 By element: Atomic # 1 Polarization: 4.77 SS G_CDS: 0.47 Total: 5.24 kcal Atomic # 6 Polarization: -7.50 SS G_CDS: 5.76 Total: -1.74 kcal Atomic # 7 Polarization: -104.05 SS G_CDS: -6.50 Total: -110.54 kcal Atomic # 8 Polarization: -22.25 SS G_CDS: -2.38 Total: -24.63 kcal Atomic # 14 Polarization: 48.07 SS G_CDS: 1.88 Total: 49.95 kcal Total: -80.96 -0.76 -81.73 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330818773.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.428 kcal (2) G-P(sol) polarization free energy of solvation -80.962 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.390 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.764 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.726 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.154 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds