Wall clock time and date at job start Mon Mar 30 2020 01:26:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.46499 * 120.00136 * 2 1 4 4 C 1.52999 * 109.47276 * 269.99459 * 3 2 1 5 5 N 1.46893 * 109.47361 * 180.02562 * 4 3 2 6 6 C 1.47013 * 110.99929 * 293.63619 * 5 4 3 7 7 C 1.53109 * 109.25866 * 177.60627 * 6 5 4 8 8 O 1.43011 * 109.25677 * 56.85034 * 7 6 5 9 9 C 1.43014 * 113.73945 * 301.32986 * 8 7 6 10 10 C 1.47012 * 111.00146 * 170.00252 * 5 4 3 11 11 C 1.34784 * 119.99893 * 179.97438 * 2 1 3 12 12 O 1.21274 * 119.99897 * 179.73022 * 11 2 1 13 13 C 1.50695 * 119.99635 * 0.02562 * 11 2 1 14 14 C 1.53002 * 109.47004 * 179.97438 * 13 11 2 15 15 C 1.50700 * 109.47331 * 180.02562 * 14 13 11 16 16 H 1.07999 * 119.99988 * 359.97438 * 15 14 13 17 17 C 1.37875 * 120.00042 * 180.02562 * 15 14 13 18 18 N 1.31514 * 120.00041 * 359.97438 * 17 15 14 19 19 Si 1.86795 * 120.00004 * 180.02562 * 17 15 14 20 20 H 1.48503 * 109.47163 * 59.99899 * 19 17 15 21 21 H 1.48505 * 109.47234 * 179.97438 * 19 17 15 22 22 H 1.48505 * 109.47290 * 299.99894 * 19 17 15 23 23 H 1.08996 * 109.47008 * 270.00543 * 1 2 3 24 24 H 1.08997 * 109.46865 * 30.00228 * 1 2 3 25 25 H 1.08998 * 109.47058 * 149.99741 * 1 2 3 26 26 H 1.08998 * 109.47416 * 29.99674 * 3 2 1 27 27 H 1.09008 * 109.47058 * 150.00274 * 3 2 1 28 28 H 1.08998 * 109.47074 * 300.00425 * 4 3 2 29 29 H 1.09007 * 109.46853 * 59.99785 * 4 3 2 30 30 H 1.08992 * 109.51039 * 297.54327 * 6 5 4 31 31 H 1.09006 * 109.50759 * 57.67723 * 6 5 4 32 32 H 1.08999 * 109.50103 * 296.91687 * 7 6 5 33 33 H 1.08994 * 109.53824 * 176.80489 * 7 6 5 34 34 H 1.08999 * 109.51245 * 298.73756 * 9 8 7 35 35 H 1.09006 * 109.54530 * 178.62599 * 9 8 7 36 36 H 1.09004 * 109.50986 * 302.32707 * 10 5 4 37 37 H 1.09010 * 109.50745 * 62.41541 * 10 5 4 38 38 H 1.09005 * 109.47403 * 300.00056 * 13 11 2 39 39 H 1.09002 * 109.47422 * 60.00295 * 13 11 2 40 40 H 1.08997 * 109.47244 * 300.00535 * 14 13 11 41 41 H 1.09002 * 109.46787 * 59.99910 * 14 13 11 42 42 H 0.97000 * 120.00297 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4527 1.7103 -1.4425 5 7 3.1877 2.9821 -1.4425 6 6 2.3627 4.0674 -0.8922 7 6 3.1854 5.3582 -0.8554 8 8 3.6596 5.6529 -2.1719 9 6 4.4672 4.6174 -2.7383 10 6 3.6576 3.3191 -2.7941 11 6 2.1389 -1.1673 0.0005 12 8 3.3516 -1.1673 -0.0044 13 6 1.3853 -2.4723 0.0005 14 6 2.3795 -3.6353 0.0005 15 6 1.6259 -4.9404 -0.0001 16 1 0.5460 -4.9403 -0.0001 17 6 2.3153 -6.1344 0.0003 18 7 3.6304 -6.1345 0.0008 19 14 1.3813 -7.7521 -0.0012 20 1 0.5288 -7.8304 -1.2147 21 1 2.3462 -8.8809 -0.0011 22 1 0.5261 -7.8311 1.2104 23 1 -0.3633 0.0001 1.0276 24 1 -0.3633 0.8900 -0.5139 25 1 -0.3633 -0.8899 -0.5139 26 1 1.6085 2.0284 0.5138 27 1 3.1500 1.1383 0.5138 28 1 3.0417 0.9506 -1.9562 29 1 1.5002 1.8406 -1.9564 30 1 1.4853 4.2129 -1.5221 31 1 2.0471 3.8081 0.1185 32 1 4.0337 5.2299 -0.1831 33 1 2.5610 6.1784 -0.5013 34 1 5.3529 4.4676 -2.1208 35 1 4.7700 4.9011 -3.7463 36 1 4.2871 2.5135 -3.1721 37 1 2.8007 3.4519 -3.4548 38 1 0.7582 -2.5298 0.8903 39 1 0.7590 -2.5302 -0.8897 40 1 3.0062 -3.5775 -0.8894 41 1 3.0061 -3.5775 0.8905 42 1 4.1154 -6.9745 0.0007 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000330895038.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:26:08 Heat of formation + Delta-G solvation = -79.544613 kcal Electronic energy + Delta-G solvation = -20890.279179 eV Core-core repulsion = 17677.388797 eV Total energy + Delta-G solvation = -3212.890382 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 270.173 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -39.96132 -39.27081 -36.45403 -34.95375 -33.49299 -31.55830 -31.24466 -29.94662 -27.10359 -26.37939 -25.08499 -24.30643 -22.61969 -21.04553 -20.58566 -18.53532 -17.04309 -16.90266 -16.43057 -15.84662 -15.72261 -15.42992 -15.34711 -15.13520 -14.63171 -14.40876 -13.92706 -13.48311 -13.29834 -12.80118 -12.65164 -12.32548 -12.26856 -12.15539 -12.06959 -11.68925 -11.58617 -11.13794 -11.01656 -10.91150 -10.73672 -10.59942 -9.98788 -9.94188 -9.62376 -9.18017 -8.99985 -8.69400 -8.42627 -8.31102 -5.95641 -4.00250 3.07600 3.23318 3.34233 3.39020 3.40646 3.56106 3.75948 4.47053 4.57497 4.67026 4.70799 4.86635 4.89367 4.99799 5.14045 5.18833 5.23742 5.32481 5.35130 5.39056 5.44387 5.49579 5.51635 5.55515 5.67611 5.73091 5.86118 6.01798 6.21832 6.23833 6.60744 6.68435 6.80574 6.84612 6.91027 7.71198 7.74490 7.86727 8.07639 8.38742 8.73920 9.08068 9.63170 11.15286 Molecular weight = 270.17amu Principal moments of inertia in cm(-1) A = 0.041375 B = 0.003051 C = 0.002932 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 676.582686 B = 9174.931807 C = 9547.504434 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.082 3.918 2 N -0.631 5.631 3 C 0.121 3.879 4 C 0.043 3.957 5 N -0.534 5.534 6 C 0.013 3.987 7 C 0.063 3.937 8 O -0.388 6.388 9 C 0.064 3.936 10 C 0.018 3.982 11 C 0.510 3.490 12 O -0.528 6.528 13 C -0.128 4.128 14 C 0.037 3.963 15 C -0.528 4.528 16 H 0.055 0.945 17 C 0.058 3.942 18 N -0.890 5.890 19 Si 0.893 3.107 20 H -0.277 1.277 21 H -0.287 1.287 22 H -0.277 1.277 23 H 0.053 0.947 24 H 0.061 0.939 25 H 0.077 0.923 26 H 0.068 0.932 27 H 0.091 0.909 28 H 0.083 0.917 29 H 0.034 0.966 30 H 0.042 0.958 31 H 0.088 0.912 32 H 0.061 0.939 33 H 0.097 0.903 34 H 0.061 0.939 35 H 0.098 0.902 36 H 0.089 0.911 37 H 0.042 0.958 38 H 0.079 0.921 39 H 0.079 0.921 40 H 0.023 0.977 41 H 0.023 0.977 42 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.256 22.509 -2.847 23.289 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 N -0.368 5.368 3 C -0.003 4.003 4 C -0.086 4.086 5 N -0.259 5.259 6 C -0.115 4.115 7 C -0.014 4.014 8 O -0.307 6.307 9 C -0.013 4.013 10 C -0.110 4.110 11 C 0.300 3.700 12 O -0.403 6.403 13 C -0.168 4.168 14 C 0.000 4.000 15 C -0.566 4.566 16 H 0.073 0.927 17 C -0.144 4.144 18 N -0.528 5.528 19 Si 0.721 3.279 20 H -0.203 1.203 21 H -0.213 1.213 22 H -0.202 1.202 23 H 0.072 0.928 24 H 0.080 0.920 25 H 0.096 0.904 26 H 0.087 0.913 27 H 0.109 0.891 28 H 0.101 0.899 29 H 0.052 0.948 30 H 0.060 0.940 31 H 0.106 0.894 32 H 0.079 0.921 33 H 0.115 0.885 34 H 0.080 0.920 35 H 0.116 0.884 36 H 0.107 0.893 37 H 0.060 0.940 38 H 0.097 0.903 39 H 0.097 0.903 40 H 0.041 0.959 41 H 0.042 0.958 42 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -4.061 22.482 -2.640 22.997 hybrid contribution -1.311 -1.102 -0.422 1.764 sum -5.372 21.380 -3.062 22.256 Atomic orbital electron populations 1.21733 0.79843 1.02891 1.01646 1.48055 1.06757 1.05903 1.76062 1.21258 0.98429 0.85010 0.95581 1.22514 0.96637 0.90911 0.98533 1.62110 1.39369 1.02470 1.21982 1.22870 0.95264 0.92128 1.01216 1.22669 0.97929 0.96081 0.84676 1.87967 1.69300 1.42350 1.31059 1.22678 0.93109 0.86258 0.99253 1.22788 0.99628 0.98924 0.89641 1.21627 0.88491 0.85525 0.74367 1.90672 1.14351 1.87197 1.48067 1.21889 1.00700 0.91943 1.02241 1.18902 0.93176 0.89375 0.98589 1.21181 0.92865 0.91038 1.51541 0.92690 1.25023 0.94825 0.99208 0.95305 1.69986 1.06055 1.26701 1.50073 0.86654 0.79549 0.83196 0.78530 1.20269 1.21274 1.20244 0.92793 0.91987 0.90433 0.91331 0.89105 0.89866 0.94767 0.94005 0.89353 0.92098 0.88512 0.92037 0.88414 0.89295 0.94003 0.90289 0.90314 0.95878 0.95839 0.92881 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.88 10.24 59.85 0.61 1.49 16 2 N -0.63 -9.24 2.87 -181.58 -0.52 -9.76 16 3 C 0.12 1.56 5.34 -4.04 -0.02 1.54 16 4 C 0.04 0.53 5.28 -3.83 -0.02 0.51 16 5 N -0.53 -5.92 4.73 -234.30 -1.11 -7.02 16 6 C 0.01 0.12 5.44 -3.71 -0.02 0.10 16 7 C 0.06 0.54 7.01 37.21 0.26 0.80 16 8 O -0.39 -4.04 10.83 -35.23 -0.38 -4.43 16 9 C 0.06 0.58 7.01 37.21 0.26 0.84 16 10 C 0.02 0.18 5.64 -3.71 -0.02 0.16 16 11 C 0.51 10.00 7.67 -10.98 -0.08 9.92 16 12 O -0.53 -12.59 15.56 5.56 0.09 -12.50 16 13 C -0.13 -2.62 4.19 -27.88 -0.12 -2.74 16 14 C 0.04 1.01 4.26 -27.88 -0.12 0.89 16 15 C -0.53 -15.02 9.11 -34.44 -0.31 -15.34 16 16 H 0.05 1.47 7.74 -52.49 -0.41 1.06 16 17 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16 18 N -0.89 -27.54 13.29 55.43 0.74 -26.81 16 19 Si 0.89 21.69 29.54 -169.99 -5.02 16.67 16 20 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 21 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 22 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 23 H 0.05 0.52 8.14 -51.93 -0.42 0.09 16 24 H 0.06 0.52 8.07 -51.93 -0.42 0.10 16 25 H 0.08 0.83 6.44 -51.93 -0.33 0.49 16 26 H 0.07 0.70 6.45 -51.93 -0.33 0.37 16 27 H 0.09 1.41 7.43 -51.92 -0.39 1.02 16 28 H 0.08 1.23 8.04 -51.93 -0.42 0.81 16 29 H 0.03 0.39 8.12 -51.92 -0.42 -0.03 16 30 H 0.04 0.38 8.14 -51.93 -0.42 -0.04 16 31 H 0.09 0.70 6.38 -51.93 -0.33 0.37 16 32 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 33 H 0.10 0.63 8.14 -51.93 -0.42 0.20 16 34 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 35 H 0.10 0.70 8.14 -51.93 -0.42 0.28 16 36 H 0.09 0.88 8.09 -51.93 -0.42 0.46 16 37 H 0.04 0.42 8.14 -51.92 -0.42 0.00 16 38 H 0.08 1.49 8.11 -51.93 -0.42 1.07 16 39 H 0.08 1.47 7.40 -51.93 -0.38 1.09 16 40 H 0.02 0.68 8.10 -51.93 -0.42 0.26 16 41 H 0.02 0.69 8.10 -51.93 -0.42 0.27 16 42 H 0.26 7.61 8.31 -40.82 -0.34 7.27 16 LS Contribution 338.56 15.07 5.10 5.10 Total: -1.00 -34.46 338.56 -8.00 -42.46 By element: Atomic # 1 Polarization: 3.73 SS G_CDS: -7.21 Total: -3.48 kcal Atomic # 6 Polarization: -0.55 SS G_CDS: 0.32 Total: -0.23 kcal Atomic # 7 Polarization: -42.70 SS G_CDS: -0.89 Total: -43.59 kcal Atomic # 8 Polarization: -16.63 SS G_CDS: -0.29 Total: -16.92 kcal Atomic # 14 Polarization: 21.69 SS G_CDS: -5.02 Total: 16.67 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -34.46 -8.00 -42.46 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330895038.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.085 kcal (2) G-P(sol) polarization free energy of solvation -34.462 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.547 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.997 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.459 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.545 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds