Wall clock time and date at job start Mon Mar 30 2020 01:26:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.46499 * 120.00136 * 2 1 4 4 C 1.52999 * 109.47276 * 269.99459 * 3 2 1 5 5 N 1.46893 * 109.47361 * 180.02562 * 4 3 2 6 6 C 1.47013 * 110.99929 * 293.63619 * 5 4 3 7 7 C 1.53109 * 109.25866 * 177.60627 * 6 5 4 8 8 O 1.43011 * 109.25677 * 56.85034 * 7 6 5 9 9 C 1.43014 * 113.73945 * 301.32986 * 8 7 6 10 10 C 1.47012 * 111.00146 * 170.00252 * 5 4 3 11 11 C 1.34784 * 119.99893 * 179.97438 * 2 1 3 12 12 O 1.21274 * 119.99897 * 179.73022 * 11 2 1 13 13 C 1.50695 * 119.99635 * 0.02562 * 11 2 1 14 14 C 1.53002 * 109.47004 * 179.97438 * 13 11 2 15 15 C 1.50700 * 109.47331 * 180.02562 * 14 13 11 16 16 H 1.07999 * 119.99988 * 359.97438 * 15 14 13 17 17 C 1.37875 * 120.00042 * 180.02562 * 15 14 13 18 18 N 1.31514 * 120.00041 * 359.97438 * 17 15 14 19 19 Si 1.86795 * 120.00004 * 180.02562 * 17 15 14 20 20 H 1.48503 * 109.47163 * 59.99899 * 19 17 15 21 21 H 1.48505 * 109.47234 * 179.97438 * 19 17 15 22 22 H 1.48505 * 109.47290 * 299.99894 * 19 17 15 23 23 H 1.08996 * 109.47008 * 270.00543 * 1 2 3 24 24 H 1.08997 * 109.46865 * 30.00228 * 1 2 3 25 25 H 1.08998 * 109.47058 * 149.99741 * 1 2 3 26 26 H 1.08998 * 109.47416 * 29.99674 * 3 2 1 27 27 H 1.09008 * 109.47058 * 150.00274 * 3 2 1 28 28 H 1.08998 * 109.47074 * 300.00425 * 4 3 2 29 29 H 1.09007 * 109.46853 * 59.99785 * 4 3 2 30 30 H 1.08992 * 109.51039 * 297.54327 * 6 5 4 31 31 H 1.09006 * 109.50759 * 57.67723 * 6 5 4 32 32 H 1.08999 * 109.50103 * 296.91687 * 7 6 5 33 33 H 1.08994 * 109.53824 * 176.80489 * 7 6 5 34 34 H 1.08999 * 109.51245 * 298.73756 * 9 8 7 35 35 H 1.09006 * 109.54530 * 178.62599 * 9 8 7 36 36 H 1.09004 * 109.50986 * 302.32707 * 10 5 4 37 37 H 1.09010 * 109.50745 * 62.41541 * 10 5 4 38 38 H 1.09005 * 109.47403 * 300.00056 * 13 11 2 39 39 H 1.09002 * 109.47422 * 60.00295 * 13 11 2 40 40 H 1.08997 * 109.47244 * 300.00535 * 14 13 11 41 41 H 1.09002 * 109.46787 * 59.99910 * 14 13 11 42 42 H 0.97000 * 120.00297 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4527 1.7103 -1.4425 5 7 3.1877 2.9821 -1.4425 6 6 2.3627 4.0674 -0.8922 7 6 3.1854 5.3582 -0.8554 8 8 3.6596 5.6529 -2.1719 9 6 4.4672 4.6174 -2.7383 10 6 3.6576 3.3191 -2.7941 11 6 2.1389 -1.1673 0.0005 12 8 3.3516 -1.1673 -0.0044 13 6 1.3853 -2.4723 0.0005 14 6 2.3795 -3.6353 0.0005 15 6 1.6259 -4.9404 -0.0001 16 1 0.5460 -4.9403 -0.0001 17 6 2.3153 -6.1344 0.0003 18 7 3.6304 -6.1345 0.0008 19 14 1.3813 -7.7521 -0.0012 20 1 0.5288 -7.8304 -1.2147 21 1 2.3462 -8.8809 -0.0011 22 1 0.5261 -7.8311 1.2104 23 1 -0.3633 0.0001 1.0276 24 1 -0.3633 0.8900 -0.5139 25 1 -0.3633 -0.8899 -0.5139 26 1 1.6085 2.0284 0.5138 27 1 3.1500 1.1383 0.5138 28 1 3.0417 0.9506 -1.9562 29 1 1.5002 1.8406 -1.9564 30 1 1.4853 4.2129 -1.5221 31 1 2.0471 3.8081 0.1185 32 1 4.0337 5.2299 -0.1831 33 1 2.5610 6.1784 -0.5013 34 1 5.3529 4.4676 -2.1208 35 1 4.7700 4.9011 -3.7463 36 1 4.2871 2.5135 -3.1721 37 1 2.8007 3.4519 -3.4548 38 1 0.7582 -2.5298 0.8903 39 1 0.7590 -2.5302 -0.8897 40 1 3.0062 -3.5775 -0.8894 41 1 3.0061 -3.5775 0.8905 42 1 4.1154 -6.9745 0.0007 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000330895038.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:26:08 Heat of formation + Delta-G solvation = -105.138961 kcal Electronic energy + Delta-G solvation = -20891.389033 eV Core-core repulsion = 17677.388797 eV Total energy + Delta-G solvation = -3214.000237 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 270.173 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.06147 -40.39814 -37.49536 -36.11979 -35.59216 -33.15115 -32.21690 -31.11553 -28.17782 -27.83836 -26.51901 -25.04551 -24.05466 -22.60047 -21.38595 -19.97084 -18.80427 -17.88439 -17.53796 -17.21631 -16.80590 -16.71850 -16.42868 -16.19539 -15.99051 -15.58361 -15.02559 -14.68704 -14.53250 -14.19487 -13.98486 -13.75418 -13.39494 -13.33200 -13.13992 -13.01010 -12.77339 -12.57133 -12.48336 -12.34591 -11.92857 -11.91044 -11.59538 -11.49472 -11.32414 -10.76501 -10.67243 -10.56189 -9.71847 -9.43564 -8.17935 -6.32490 1.41889 1.46629 1.54363 1.67038 1.97793 2.42951 2.78573 2.95667 3.14806 3.68857 3.82350 3.93771 3.95730 4.06752 4.17423 4.29398 4.30677 4.33362 4.37835 4.46978 4.50974 4.58137 4.69295 4.71881 4.77059 4.77927 4.87008 4.91898 4.94993 5.00091 5.10201 5.47629 5.58163 5.62140 5.84073 5.85556 5.92420 6.14409 6.17047 6.37744 6.85933 7.26402 7.37973 8.94664 Molecular weight = 270.17amu Principal moments of inertia in cm(-1) A = 0.041375 B = 0.003051 C = 0.002932 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 676.582686 B = 9174.931807 C = 9547.504434 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.072 3.928 2 N -0.618 5.618 3 C 0.123 3.877 4 C 0.054 3.946 5 N -0.549 5.549 6 C 0.014 3.986 7 C 0.060 3.940 8 O -0.403 6.403 9 C 0.066 3.934 10 C 0.018 3.982 11 C 0.506 3.494 12 O -0.586 6.586 13 C -0.115 4.115 14 C 0.043 3.957 15 C -0.544 4.544 16 H 0.077 0.923 17 C -0.008 4.008 18 N -0.938 5.938 19 Si 0.975 3.025 20 H -0.262 1.262 21 H -0.288 1.288 22 H -0.261 1.261 23 H 0.073 0.927 24 H 0.094 0.906 25 H 0.079 0.921 26 H 0.108 0.892 27 H 0.059 0.941 28 H 0.048 0.952 29 H 0.049 0.951 30 H 0.046 0.954 31 H 0.102 0.898 32 H 0.058 0.942 33 H 0.120 0.880 34 H 0.057 0.943 35 H 0.116 0.884 36 H 0.081 0.919 37 H 0.044 0.956 38 H 0.103 0.897 39 H 0.103 0.897 40 H -0.020 1.020 41 H -0.020 1.020 42 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.474 23.538 -2.754 25.168 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 N -0.352 5.352 3 C 0.000 4.000 4 C -0.075 4.075 5 N -0.275 5.275 6 C -0.113 4.113 7 C -0.016 4.016 8 O -0.322 6.322 9 C -0.011 4.011 10 C -0.110 4.110 11 C 0.297 3.703 12 O -0.466 6.466 13 C -0.155 4.155 14 C 0.005 3.995 15 C -0.582 4.582 16 H 0.095 0.905 17 C -0.205 4.205 18 N -0.578 5.578 19 Si 0.798 3.202 20 H -0.186 1.186 21 H -0.214 1.214 22 H -0.186 1.186 23 H 0.091 0.909 24 H 0.113 0.887 25 H 0.098 0.902 26 H 0.126 0.874 27 H 0.078 0.922 28 H 0.067 0.933 29 H 0.067 0.933 30 H 0.064 0.936 31 H 0.120 0.880 32 H 0.076 0.924 33 H 0.138 0.862 34 H 0.076 0.924 35 H 0.134 0.866 36 H 0.100 0.900 37 H 0.062 0.938 38 H 0.121 0.879 39 H 0.121 0.879 40 H -0.002 1.002 41 H -0.001 1.001 42 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -7.348 23.567 -2.546 24.817 hybrid contribution -0.305 -1.321 -0.444 1.426 sum -7.654 22.246 -2.990 23.715 Atomic orbital electron populations 1.22094 0.76643 1.04711 1.03486 1.48000 1.08662 1.04871 1.73656 1.21354 0.97658 0.84835 0.96187 1.22281 0.96745 0.90833 0.97626 1.62092 1.39961 1.02666 1.22745 1.22949 0.95106 0.91495 1.01773 1.22833 0.98166 0.96683 0.83938 1.87948 1.69479 1.42830 1.31939 1.22734 0.92585 0.85573 1.00210 1.22805 0.99729 0.99251 0.89218 1.21444 0.87699 0.86842 0.74358 1.90653 1.16699 1.88081 1.51160 1.21641 0.99237 0.90105 1.04478 1.18684 0.93692 0.92569 0.94518 1.21686 0.94012 0.91560 1.50922 0.90503 1.26160 0.95723 1.04016 0.94599 1.70178 1.08374 1.27891 1.51395 0.85363 0.78044 0.77240 0.79527 1.18630 1.21384 1.18591 0.90862 0.88715 0.90213 0.87442 0.92219 0.93305 0.93254 0.93561 0.88020 0.92391 0.86175 0.92428 0.86614 0.90022 0.93814 0.87917 0.87887 1.00164 1.00139 0.92850 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.26 10.24 127.77 1.31 2.57 16 2 N -0.62 -17.16 2.87 -846.77 -2.43 -19.59 16 3 C 0.12 3.02 5.34 86.38 0.46 3.49 16 4 C 0.05 1.29 5.28 86.30 0.46 1.75 16 5 N -0.55 -11.71 4.73 -895.18 -4.23 -15.94 16 6 C 0.01 0.23 5.44 86.32 0.47 0.70 16 7 C 0.06 0.90 7.01 72.02 0.50 1.41 16 8 O -0.40 -7.76 10.83 -148.98 -1.61 -9.37 16 9 C 0.07 1.13 7.01 72.02 0.50 1.64 16 10 C 0.02 0.35 5.64 86.32 0.49 0.84 16 11 C 0.51 20.19 7.67 87.65 0.67 20.86 16 12 O -0.59 -29.68 15.56 -3.01 -0.05 -29.73 16 13 C -0.12 -4.69 4.19 29.85 0.13 -4.56 16 14 C 0.04 2.43 4.26 29.85 0.13 2.56 16 15 C -0.54 -31.16 9.11 25.60 0.23 -30.93 16 16 H 0.08 3.97 7.74 -2.91 -0.02 3.95 16 17 C -0.01 -0.44 5.46 84.65 0.46 0.02 16 18 N -0.94 -60.15 13.29 21.45 0.28 -59.87 16 19 Si 0.97 44.36 29.54 68.60 2.03 46.38 16 20 H -0.26 -11.20 7.11 99.48 0.71 -10.49 16 21 H -0.29 -13.05 7.11 99.48 0.71 -12.34 16 22 H -0.26 -11.18 7.11 99.48 0.71 -10.47 16 23 H 0.07 1.07 8.14 -2.39 -0.02 1.05 16 24 H 0.09 1.10 8.07 -2.39 -0.02 1.08 16 25 H 0.08 1.40 6.44 -2.39 -0.02 1.39 16 26 H 0.11 1.83 6.45 -2.39 -0.02 1.81 16 27 H 0.06 1.89 7.43 -2.38 -0.02 1.87 16 28 H 0.05 1.50 8.04 -2.39 -0.02 1.48 16 29 H 0.05 1.02 8.12 -2.38 -0.02 1.00 16 30 H 0.05 0.70 8.14 -2.39 -0.02 0.69 16 31 H 0.10 1.29 6.38 -2.38 -0.02 1.28 16 32 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 33 H 0.12 1.21 8.14 -2.39 -0.02 1.19 16 34 H 0.06 1.02 8.14 -2.39 -0.02 1.00 16 35 H 0.12 1.52 8.14 -2.38 -0.02 1.50 16 36 H 0.08 1.67 8.09 -2.38 -0.02 1.65 16 37 H 0.04 0.83 8.14 -2.38 -0.02 0.81 16 38 H 0.10 3.68 8.11 -2.38 -0.02 3.66 16 39 H 0.10 3.68 7.40 -2.39 -0.02 3.66 16 40 H -0.02 -1.29 8.10 -2.39 -0.02 -1.31 16 41 H -0.02 -1.27 8.10 -2.39 -0.02 -1.29 16 42 H 0.26 15.79 8.31 -92.71 -0.77 15.02 16 Total: -1.00 -79.48 338.56 0.77 -78.71 By element: Atomic # 1 Polarization: 8.10 SS G_CDS: 0.98 Total: 9.07 kcal Atomic # 6 Polarization: -5.48 SS G_CDS: 5.81 Total: 0.33 kcal Atomic # 7 Polarization: -89.02 SS G_CDS: -6.38 Total: -95.40 kcal Atomic # 8 Polarization: -37.44 SS G_CDS: -1.66 Total: -39.10 kcal Atomic # 14 Polarization: 44.36 SS G_CDS: 2.03 Total: 46.38 kcal Total: -79.48 0.77 -78.71 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330895038.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.430 kcal (2) G-P(sol) polarization free energy of solvation -79.483 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.913 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.774 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.709 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.139 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds