Wall clock time and date at job start Mon Mar 30 2020 01:20:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46905 * 1 3 3 C 1.46898 * 110.99974 * 2 1 4 4 C 1.46901 * 110.99586 * 123.95470 * 2 1 3 5 5 C 1.52994 * 109.47289 * 75.73102 * 4 2 1 6 6 H 1.09005 * 109.51567 * 302.60407 * 5 4 2 7 7 C 1.53299 * 109.51416 * 182.50933 * 5 4 2 8 8 N 1.47152 * 108.38795 * 187.77505 * 7 5 4 9 9 C 1.34772 * 120.98096 * 230.55474 * 8 7 5 10 10 O 1.21285 * 120.00387 * 359.97438 * 9 8 7 11 11 C 1.50698 * 119.99831 * 179.97438 * 9 8 7 12 12 C 1.53005 * 109.47069 * 179.97438 * 11 9 8 13 13 C 1.50697 * 109.47403 * 179.97438 * 12 11 9 14 14 H 1.08005 * 119.99782 * 0.02562 * 13 12 11 15 15 C 1.37875 * 120.00116 * 180.02562 * 13 12 11 16 16 N 1.31504 * 120.00156 * 0.02562 * 15 13 12 17 17 Si 1.86801 * 119.99668 * 180.02562 * 15 13 12 18 18 H 1.48503 * 109.46976 * 60.00722 * 17 15 13 19 19 H 1.48501 * 109.47022 * 180.02562 * 17 15 13 20 20 H 1.48499 * 109.47629 * 300.00350 * 17 15 13 21 21 C 1.47149 * 118.03604 * 50.52863 * 8 7 5 22 22 C 1.53296 * 108.38769 * 309.47103 * 21 8 7 23 23 O 1.42954 * 109.26449 * 52.27306 * 22 21 8 24 24 H 1.09000 * 109.46548 * 56.04867 * 1 2 3 25 25 H 1.09000 * 109.46893 * 176.04365 * 1 2 3 26 26 H 1.08994 * 109.47590 * 296.04775 * 1 2 3 27 27 H 1.08998 * 109.47298 * 55.11478 * 3 2 1 28 28 H 1.09005 * 109.46752 * 175.10988 * 3 2 1 29 29 H 1.09001 * 109.47150 * 295.10702 * 3 2 1 30 30 H 1.09002 * 109.46739 * 195.73221 * 4 2 1 31 31 H 1.08999 * 109.47256 * 315.72535 * 4 2 1 32 32 H 1.09005 * 109.67805 * 307.49282 * 7 5 4 33 33 H 1.08995 * 109.68512 * 68.00699 * 7 5 4 34 34 H 1.09000 * 109.47236 * 299.99692 * 11 9 8 35 35 H 1.09000 * 109.47063 * 60.00441 * 11 9 8 36 36 H 1.08990 * 109.47479 * 300.00524 * 12 11 9 37 37 H 1.09008 * 109.46864 * 60.00411 * 12 11 9 38 38 H 0.97005 * 120.00134 * 179.97438 * 16 15 13 39 39 H 1.09008 * 109.68171 * 69.19266 * 21 8 7 40 40 H 1.09000 * 109.68402 * 189.74284 * 21 8 7 41 41 H 1.08999 * 109.51607 * 172.22379 * 22 21 8 42 42 H 1.09005 * 109.50807 * 292.37511 * 22 21 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.9954 -0.7660 1.1376 5 6 1.8462 -2.2627 0.8574 6 1 0.7981 -2.4951 0.6686 7 6 2.3374 -3.0620 2.0698 8 7 2.3601 -4.4880 1.7073 9 6 1.7735 -5.4129 2.4927 10 8 1.2166 -5.0748 3.5157 11 6 1.8096 -6.8673 2.0999 12 6 1.0775 -7.6990 3.1551 13 6 1.1130 -9.1533 2.7620 14 1 1.6086 -9.4545 1.8508 15 6 0.5128 -10.0995 3.5654 16 7 -0.0911 -9.7328 4.6746 17 14 0.5575 -11.9023 3.0784 18 1 1.9688 -12.3548 2.9843 19 1 -0.1542 -12.7093 4.1019 20 1 -0.1069 -12.0761 1.7618 21 6 3.0417 -4.8743 0.4617 22 6 2.5161 -3.9867 -0.6723 23 8 2.6271 -2.6144 -0.2872 24 1 -0.3632 0.5740 -0.8525 25 1 -0.3633 -1.0252 -0.0709 26 1 -0.3634 0.4512 0.9232 27 1 1.5770 1.9213 0.8430 28 1 3.0816 1.3436 0.0876 29 1 1.7186 1.8669 -0.9306 30 1 3.0491 -0.5263 1.2806 31 1 1.4386 -0.5077 2.0384 32 1 3.3415 -2.7364 2.3418 33 1 1.6610 -2.9070 2.9103 34 1 1.3218 -6.9949 1.1335 35 1 2.8455 -7.1994 2.0307 36 1 1.5656 -7.5713 4.1212 37 1 0.0415 -7.3670 3.2247 38 1 -0.5136 -10.3984 5.2397 39 1 4.1167 -4.7311 0.5718 40 1 2.8312 -5.9199 0.2370 41 1 3.1044 -4.1606 -1.5733 42 1 1.4707 -4.2260 -0.8673 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000330901655.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:20:52 Heat of formation + Delta-G solvation = -76.206739 kcal Electronic energy + Delta-G solvation = -21217.326844 eV Core-core repulsion = 18004.581203 eV Total energy + Delta-G solvation = -3212.745641 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 270.173 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.18025 -38.41446 -37.15076 -34.45611 -33.55377 -32.32574 -30.88250 -28.49396 -27.84290 -27.03062 -25.18571 -23.63643 -22.55561 -21.31385 -20.77228 -18.61261 -17.15059 -16.73188 -16.12364 -15.99845 -15.59262 -15.22923 -15.13876 -14.93004 -14.53932 -14.38189 -14.13111 -13.52995 -13.10959 -12.72618 -12.58986 -12.30962 -12.18575 -12.12205 -11.96417 -11.85635 -11.62281 -11.27401 -11.11480 -10.92419 -10.62572 -10.61053 -10.04375 -9.97976 -9.63970 -9.21560 -9.03156 -8.58573 -8.38840 -8.31233 -5.97170 -4.01888 3.07991 3.16299 3.33655 3.38456 3.40107 3.61938 3.69301 4.45761 4.65484 4.76804 4.84911 4.87254 4.99887 5.06604 5.13872 5.14481 5.21363 5.34401 5.36799 5.37714 5.39588 5.47113 5.59754 5.61024 5.66789 5.72555 5.80105 5.91978 6.16205 6.18173 6.58294 6.72327 6.75681 6.86118 7.14189 7.66988 7.72401 7.83892 8.05382 8.36407 8.67678 9.06133 9.61696 11.13777 Molecular weight = 270.17amu Principal moments of inertia in cm(-1) A = 0.039282 B = 0.003372 C = 0.003267 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 712.618545 B = 8300.687727 C = 8568.419135 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 N -0.538 5.538 3 C 0.026 3.974 4 C 0.063 3.937 5 C 0.086 3.914 6 H 0.062 0.938 7 C 0.083 3.917 8 N -0.628 5.628 9 C 0.514 3.486 10 O -0.533 6.533 11 C -0.128 4.128 12 C 0.038 3.962 13 C -0.528 4.528 14 H 0.055 0.945 15 C 0.058 3.942 16 N -0.890 5.890 17 Si 0.893 3.107 18 H -0.277 1.277 19 H -0.287 1.287 20 H -0.277 1.277 21 C 0.074 3.926 22 C 0.047 3.953 23 O -0.361 6.361 24 H 0.068 0.932 25 H 0.069 0.931 26 H 0.026 0.974 27 H 0.024 0.976 28 H 0.068 0.932 29 H 0.068 0.932 30 H 0.084 0.916 31 H 0.055 0.945 32 H 0.069 0.931 33 H 0.098 0.902 34 H 0.079 0.921 35 H 0.080 0.920 36 H 0.023 0.977 37 H 0.023 0.977 38 H 0.262 0.738 39 H 0.073 0.927 40 H 0.100 0.900 41 H 0.104 0.896 42 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.613 19.162 -11.516 23.050 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 N -0.262 5.262 3 C -0.122 4.122 4 C -0.066 4.066 5 C 0.027 3.973 6 H 0.080 0.920 7 C -0.041 4.041 8 N -0.365 5.365 9 C 0.305 3.695 10 O -0.408 6.408 11 C -0.168 4.168 12 C 0.000 4.000 13 C -0.567 4.567 14 H 0.074 0.926 15 C -0.143 4.143 16 N -0.528 5.528 17 Si 0.721 3.279 18 H -0.202 1.202 19 H -0.213 1.213 20 H -0.202 1.202 21 C -0.050 4.050 22 C -0.030 4.030 23 O -0.280 6.280 24 H 0.087 0.913 25 H 0.087 0.913 26 H 0.044 0.956 27 H 0.042 0.958 28 H 0.087 0.913 29 H 0.087 0.913 30 H 0.102 0.898 31 H 0.073 0.927 32 H 0.087 0.913 33 H 0.116 0.884 34 H 0.098 0.902 35 H 0.098 0.902 36 H 0.042 0.958 37 H 0.041 0.959 38 H 0.071 0.929 39 H 0.091 0.909 40 H 0.118 0.882 41 H 0.122 0.878 42 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 5.466 19.162 -11.306 22.910 hybrid contribution -0.391 -0.832 0.590 1.092 sum 5.075 18.330 -10.715 21.830 Atomic orbital electron populations 1.22467 0.87294 1.02482 1.00459 1.61852 1.07848 1.13577 1.42899 1.22396 1.00500 0.88543 1.00768 1.22114 1.01268 0.91536 0.91669 1.22424 0.95135 0.93681 0.86082 0.92036 1.22122 1.02522 0.81399 0.98082 1.48326 1.57418 1.06540 1.24199 1.21640 0.76278 0.88867 0.82730 1.90658 1.43209 1.81932 1.24957 1.21889 1.03011 0.88856 1.03008 1.18903 0.95755 0.92603 0.92735 1.21173 1.35807 0.91969 1.07706 0.92643 1.25022 0.95323 0.99021 0.94981 1.69983 1.35931 1.33993 1.12923 0.86646 0.78160 0.84917 0.78167 1.20223 1.21274 1.20233 1.22418 0.97393 1.00827 0.84349 1.22971 1.01208 0.82020 0.96843 1.88010 1.68268 1.25358 1.46325 0.91311 0.91263 0.95555 0.95779 0.91302 0.91330 0.89787 0.92741 0.91251 0.88419 0.90238 0.90166 0.95827 0.95862 0.92865 0.90869 0.88156 0.87766 0.92762 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.19 9.39 60.07 0.56 0.75 16 2 N -0.54 -5.32 4.86 -251.26 -1.22 -6.54 16 3 C 0.03 0.20 9.62 60.06 0.58 0.78 16 4 C 0.06 0.62 4.68 -3.83 -0.02 0.60 16 5 C 0.09 1.02 2.85 -26.58 -0.08 0.94 16 6 H 0.06 0.79 6.85 -51.93 -0.36 0.43 16 7 C 0.08 1.11 5.93 -3.53 -0.02 1.09 16 8 N -0.63 -9.63 3.02 -172.27 -0.52 -10.15 16 9 C 0.51 10.21 7.71 -10.99 -0.08 10.12 16 10 O -0.53 -12.72 15.45 5.55 0.09 -12.63 16 11 C -0.13 -2.62 4.01 -27.88 -0.11 -2.73 16 12 C 0.04 1.02 4.26 -27.88 -0.12 0.90 16 13 C -0.53 -14.98 9.11 -34.44 -0.31 -15.29 16 14 H 0.06 1.47 7.74 -52.48 -0.41 1.07 16 15 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16 16 N -0.89 -27.48 13.29 55.43 0.74 -26.74 16 17 Si 0.89 21.63 29.54 -169.99 -5.02 16.61 16 18 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 19 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 20 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 21 C 0.07 0.87 6.54 -3.53 -0.02 0.84 16 22 C 0.05 0.50 6.98 37.31 0.26 0.77 16 23 O -0.36 -4.46 10.30 -35.23 -0.36 -4.82 16 24 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 25 H 0.07 0.66 6.84 -51.93 -0.36 0.31 16 26 H 0.03 0.22 8.09 -51.93 -0.42 -0.20 16 27 H 0.02 0.17 8.13 -51.93 -0.42 -0.25 16 28 H 0.07 0.50 7.86 -51.93 -0.41 0.09 16 29 H 0.07 0.48 8.14 -51.93 -0.42 0.05 16 30 H 0.08 0.78 7.75 -51.93 -0.40 0.38 16 31 H 0.05 0.50 7.96 -51.93 -0.41 0.09 16 32 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 33 H 0.10 1.44 7.08 -51.93 -0.37 1.08 16 34 H 0.08 1.48 7.66 -51.93 -0.40 1.08 16 35 H 0.08 1.50 8.01 -51.93 -0.42 1.09 16 36 H 0.02 0.70 8.10 -51.93 -0.42 0.28 16 37 H 0.02 0.68 8.10 -51.92 -0.42 0.26 16 38 H 0.26 7.60 8.31 -40.82 -0.34 7.26 16 39 H 0.07 0.78 8.14 -51.92 -0.42 0.36 16 40 H 0.10 1.13 6.05 -51.93 -0.31 0.81 16 41 H 0.10 0.86 8.14 -51.93 -0.42 0.44 16 42 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 LS Contribution 337.71 15.07 5.09 5.09 Total: -1.00 -34.39 337.71 -7.87 -42.26 By element: Atomic # 1 Polarization: 3.74 SS G_CDS: -7.19 Total: -3.45 kcal Atomic # 6 Polarization: -0.17 SS G_CDS: 0.54 Total: 0.37 kcal Atomic # 7 Polarization: -42.43 SS G_CDS: -1.01 Total: -43.43 kcal Atomic # 8 Polarization: -17.18 SS G_CDS: -0.28 Total: -17.45 kcal Atomic # 14 Polarization: 21.63 SS G_CDS: -5.02 Total: 16.61 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -34.39 -7.87 -42.26 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330901655.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.946 kcal (2) G-P(sol) polarization free energy of solvation -34.393 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.339 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.868 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.261 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.207 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds