Wall clock time and date at job start Mon Mar 30 2020 01:20:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46905 * 1 3 3 C 1.46898 * 110.99974 * 2 1 4 4 C 1.46901 * 110.99586 * 123.95470 * 2 1 3 5 5 C 1.52994 * 109.47289 * 75.73102 * 4 2 1 6 6 H 1.09005 * 109.51567 * 302.60407 * 5 4 2 7 7 C 1.53299 * 109.51416 * 182.50933 * 5 4 2 8 8 N 1.47152 * 108.38795 * 187.77505 * 7 5 4 9 9 C 1.34772 * 120.98096 * 230.55474 * 8 7 5 10 10 O 1.21285 * 120.00387 * 359.97438 * 9 8 7 11 11 C 1.50698 * 119.99831 * 179.97438 * 9 8 7 12 12 C 1.53005 * 109.47069 * 179.97438 * 11 9 8 13 13 C 1.50697 * 109.47403 * 179.97438 * 12 11 9 14 14 H 1.08005 * 119.99782 * 0.02562 * 13 12 11 15 15 C 1.37875 * 120.00116 * 180.02562 * 13 12 11 16 16 N 1.31504 * 120.00156 * 0.02562 * 15 13 12 17 17 Si 1.86801 * 119.99668 * 180.02562 * 15 13 12 18 18 H 1.48503 * 109.46976 * 60.00722 * 17 15 13 19 19 H 1.48501 * 109.47022 * 180.02562 * 17 15 13 20 20 H 1.48499 * 109.47629 * 300.00350 * 17 15 13 21 21 C 1.47149 * 118.03604 * 50.52863 * 8 7 5 22 22 C 1.53296 * 108.38769 * 309.47103 * 21 8 7 23 23 O 1.42954 * 109.26449 * 52.27306 * 22 21 8 24 24 H 1.09000 * 109.46548 * 56.04867 * 1 2 3 25 25 H 1.09000 * 109.46893 * 176.04365 * 1 2 3 26 26 H 1.08994 * 109.47590 * 296.04775 * 1 2 3 27 27 H 1.08998 * 109.47298 * 55.11478 * 3 2 1 28 28 H 1.09005 * 109.46752 * 175.10988 * 3 2 1 29 29 H 1.09001 * 109.47150 * 295.10702 * 3 2 1 30 30 H 1.09002 * 109.46739 * 195.73221 * 4 2 1 31 31 H 1.08999 * 109.47256 * 315.72535 * 4 2 1 32 32 H 1.09005 * 109.67805 * 307.49282 * 7 5 4 33 33 H 1.08995 * 109.68512 * 68.00699 * 7 5 4 34 34 H 1.09000 * 109.47236 * 299.99692 * 11 9 8 35 35 H 1.09000 * 109.47063 * 60.00441 * 11 9 8 36 36 H 1.08990 * 109.47479 * 300.00524 * 12 11 9 37 37 H 1.09008 * 109.46864 * 60.00411 * 12 11 9 38 38 H 0.97005 * 120.00134 * 179.97438 * 16 15 13 39 39 H 1.09008 * 109.68171 * 69.19266 * 21 8 7 40 40 H 1.09000 * 109.68402 * 189.74284 * 21 8 7 41 41 H 1.08999 * 109.51607 * 172.22379 * 22 21 8 42 42 H 1.09005 * 109.50807 * 292.37511 * 22 21 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.9954 -0.7660 1.1376 5 6 1.8462 -2.2627 0.8574 6 1 0.7981 -2.4951 0.6686 7 6 2.3374 -3.0620 2.0698 8 7 2.3601 -4.4880 1.7073 9 6 1.7735 -5.4129 2.4927 10 8 1.2166 -5.0748 3.5157 11 6 1.8096 -6.8673 2.0999 12 6 1.0775 -7.6990 3.1551 13 6 1.1130 -9.1533 2.7620 14 1 1.6086 -9.4545 1.8508 15 6 0.5128 -10.0995 3.5654 16 7 -0.0911 -9.7328 4.6746 17 14 0.5575 -11.9023 3.0784 18 1 1.9688 -12.3548 2.9843 19 1 -0.1542 -12.7093 4.1019 20 1 -0.1069 -12.0761 1.7618 21 6 3.0417 -4.8743 0.4617 22 6 2.5161 -3.9867 -0.6723 23 8 2.6271 -2.6144 -0.2872 24 1 -0.3632 0.5740 -0.8525 25 1 -0.3633 -1.0252 -0.0709 26 1 -0.3634 0.4512 0.9232 27 1 1.5770 1.9213 0.8430 28 1 3.0816 1.3436 0.0876 29 1 1.7186 1.8669 -0.9306 30 1 3.0491 -0.5263 1.2806 31 1 1.4386 -0.5077 2.0384 32 1 3.3415 -2.7364 2.3418 33 1 1.6610 -2.9070 2.9103 34 1 1.3218 -6.9949 1.1335 35 1 2.8455 -7.1994 2.0307 36 1 1.5656 -7.5713 4.1212 37 1 0.0415 -7.3670 3.2247 38 1 -0.5136 -10.3984 5.2397 39 1 4.1167 -4.7311 0.5718 40 1 2.8312 -5.9199 0.2370 41 1 3.1044 -4.1606 -1.5733 42 1 1.4707 -4.2260 -0.8673 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000330901655.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:20:52 Heat of formation + Delta-G solvation = -101.555243 kcal Electronic energy + Delta-G solvation = -21218.426038 eV Core-core repulsion = 18004.581203 eV Total energy + Delta-G solvation = -3213.844835 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 270.173 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.41481 -39.65515 -37.98915 -35.72008 -35.62857 -33.50419 -32.66074 -29.50675 -28.52484 -28.46061 -26.78236 -24.58093 -23.96468 -22.68514 -21.79872 -20.01273 -18.89669 -17.81319 -17.64066 -17.14040 -16.85348 -16.49536 -16.24931 -16.10397 -15.87229 -15.45353 -15.07887 -14.90309 -14.51236 -14.17801 -13.89460 -13.52900 -13.32663 -13.27839 -12.98907 -12.82199 -12.75922 -12.60406 -12.49642 -12.39639 -12.12852 -11.94708 -11.66478 -11.55761 -11.33694 -11.09824 -10.70852 -10.56744 -9.58181 -9.29593 -8.18560 -6.33038 1.42167 1.46790 1.54442 1.59701 1.85707 2.42726 2.74282 2.94163 3.14450 3.64481 3.77777 3.89139 4.02562 4.04348 4.21602 4.28002 4.32528 4.39914 4.43247 4.47906 4.49891 4.56190 4.59596 4.69532 4.75045 4.79623 4.86368 4.94946 5.01444 5.04887 5.05425 5.40430 5.49614 5.59768 5.83232 5.98417 6.08520 6.15751 6.23666 6.28919 6.84909 7.16365 7.37429 8.94056 Molecular weight = 270.17amu Principal moments of inertia in cm(-1) A = 0.039282 B = 0.003372 C = 0.003267 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 712.618545 B = 8300.687727 C = 8568.419135 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 N -0.554 5.554 3 C 0.027 3.973 4 C 0.066 3.934 5 C 0.096 3.904 6 H 0.047 0.953 7 C 0.081 3.919 8 N -0.619 5.619 9 C 0.512 3.488 10 O -0.587 6.587 11 C -0.115 4.115 12 C 0.044 3.956 13 C -0.544 4.544 14 H 0.078 0.922 15 C -0.007 4.007 16 N -0.938 5.938 17 Si 0.975 3.025 18 H -0.261 1.261 19 H -0.288 1.288 20 H -0.261 1.261 21 C 0.067 3.933 22 C 0.048 3.952 23 O -0.368 6.368 24 H 0.079 0.921 25 H 0.056 0.944 26 H 0.030 0.970 27 H 0.030 0.970 28 H 0.073 0.927 29 H 0.076 0.924 30 H 0.093 0.907 31 H 0.059 0.941 32 H 0.087 0.913 33 H 0.078 0.922 34 H 0.104 0.896 35 H 0.105 0.895 36 H -0.019 1.019 37 H -0.019 1.019 38 H 0.263 0.737 39 H 0.093 0.907 40 H 0.110 0.890 41 H 0.136 0.864 42 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.198 19.057 -14.126 24.789 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 N -0.278 5.278 3 C -0.121 4.121 4 C -0.063 4.063 5 C 0.036 3.964 6 H 0.065 0.935 7 C -0.043 4.043 8 N -0.353 5.353 9 C 0.303 3.697 10 O -0.467 6.467 11 C -0.154 4.154 12 C 0.006 3.994 13 C -0.582 4.582 14 H 0.096 0.904 15 C -0.205 4.205 16 N -0.578 5.578 17 Si 0.798 3.202 18 H -0.186 1.186 19 H -0.214 1.214 20 H -0.186 1.186 21 C -0.055 4.055 22 C -0.029 4.029 23 O -0.286 6.286 24 H 0.098 0.902 25 H 0.075 0.925 26 H 0.048 0.952 27 H 0.048 0.952 28 H 0.092 0.908 29 H 0.094 0.906 30 H 0.111 0.889 31 H 0.077 0.923 32 H 0.105 0.895 33 H 0.096 0.904 34 H 0.123 0.877 35 H 0.123 0.877 36 H 0.000 1.000 37 H -0.001 1.001 38 H 0.072 0.928 39 H 0.112 0.888 40 H 0.128 0.872 41 H 0.154 0.846 42 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 7.093 19.092 -13.985 24.706 hybrid contribution -0.861 -0.718 1.371 1.771 sum 6.232 18.374 -12.614 23.142 Atomic orbital electron populations 1.22461 0.87037 1.01957 1.01172 1.61841 1.08275 1.14835 1.42806 1.22434 1.00776 0.87438 1.01466 1.22073 1.01959 0.90226 0.92009 1.22313 0.94190 0.94703 0.85169 0.93454 1.22263 1.03138 0.80405 0.98451 1.48297 1.55828 1.06714 1.24462 1.21467 0.76368 0.89361 0.82543 1.90639 1.45969 1.82650 1.27466 1.21646 1.03630 0.88578 1.01594 1.18683 0.93704 0.93972 0.93042 1.21677 1.35605 0.92491 1.08391 0.90422 1.26151 0.94674 1.04888 0.94739 1.70172 1.37185 1.35934 1.14542 0.85363 0.78908 0.77783 0.78129 1.18602 1.21415 1.18598 1.22766 0.98186 1.01752 0.82799 1.23124 1.01512 0.80938 0.97343 1.88011 1.68155 1.26302 1.46136 0.90202 0.92485 0.95173 0.95153 0.90801 0.90554 0.88878 0.92339 0.89489 0.90387 0.87745 0.87701 1.00044 1.00075 0.92838 0.88847 0.87202 0.84587 0.93342 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.37 9.39 127.69 1.20 1.56 16 2 N -0.55 -10.07 4.86 -948.85 -4.61 -14.68 16 3 C 0.03 0.36 9.62 127.69 1.23 1.58 16 4 C 0.07 1.22 4.68 86.30 0.40 1.62 16 5 C 0.10 2.16 2.85 30.69 0.09 2.25 16 6 H 0.05 1.21 6.85 -2.38 -0.02 1.20 16 7 C 0.08 2.13 5.93 86.36 0.51 2.64 16 8 N -0.62 -18.39 3.02 -817.34 -2.47 -20.86 16 9 C 0.51 20.62 7.71 87.66 0.68 21.30 16 10 O -0.59 -29.58 15.45 -3.04 -0.05 -29.63 16 11 C -0.11 -4.67 4.01 29.85 0.12 -4.55 16 12 C 0.04 2.45 4.26 29.85 0.13 2.58 16 13 C -0.54 -30.92 9.11 25.60 0.23 -30.69 16 14 H 0.08 3.97 7.74 -2.91 -0.02 3.95 16 15 C -0.01 -0.41 5.46 84.66 0.46 0.05 16 16 N -0.94 -59.81 13.29 21.45 0.28 -59.53 16 17 Si 0.97 44.13 29.54 68.60 2.03 46.16 16 18 H -0.26 -11.14 7.11 99.48 0.71 -10.43 16 19 H -0.29 -13.01 7.11 99.48 0.71 -12.30 16 20 H -0.26 -11.13 7.11 99.48 0.71 -10.42 16 21 C 0.07 1.39 6.54 86.35 0.56 1.95 16 22 C 0.05 0.89 6.98 72.08 0.50 1.39 16 23 O -0.37 -8.21 10.30 -148.98 -1.53 -9.74 16 24 H 0.08 1.13 8.14 -2.39 -0.02 1.11 16 25 H 0.06 1.08 6.84 -2.39 -0.02 1.06 16 26 H 0.03 0.47 8.09 -2.39 -0.02 0.45 16 27 H 0.03 0.37 8.13 -2.39 -0.02 0.35 16 28 H 0.07 0.91 7.86 -2.38 -0.02 0.89 16 29 H 0.08 0.90 8.14 -2.39 -0.02 0.88 16 30 H 0.09 1.55 7.75 -2.39 -0.02 1.53 16 31 H 0.06 1.03 7.96 -2.39 -0.02 1.01 16 32 H 0.09 2.00 8.14 -2.38 -0.02 1.98 16 33 H 0.08 2.39 7.08 -2.39 -0.02 2.37 16 34 H 0.10 3.70 7.66 -2.39 -0.02 3.68 16 35 H 0.10 3.73 8.01 -2.39 -0.02 3.71 16 36 H -0.02 -1.20 8.10 -2.39 -0.02 -1.22 16 37 H -0.02 -1.22 8.10 -2.38 -0.02 -1.24 16 38 H 0.26 15.71 8.31 -92.70 -0.77 14.94 16 39 H 0.09 1.65 8.14 -2.38 -0.02 1.63 16 40 H 0.11 2.09 6.05 -2.39 -0.01 2.08 16 41 H 0.14 1.69 8.14 -2.39 -0.02 1.67 16 42 H 0.05 0.97 8.14 -2.38 -0.02 0.95 16 Total: -1.00 -77.51 337.71 0.74 -76.77 By element: Atomic # 1 Polarization: 8.84 SS G_CDS: 0.98 Total: 9.81 kcal Atomic # 6 Polarization: -4.43 SS G_CDS: 6.12 Total: 1.69 kcal Atomic # 7 Polarization: -88.27 SS G_CDS: -6.80 Total: -95.07 kcal Atomic # 8 Polarization: -37.79 SS G_CDS: -1.58 Total: -39.37 kcal Atomic # 14 Polarization: 44.13 SS G_CDS: 2.03 Total: 46.16 kcal Total: -77.51 0.74 -76.77 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330901655.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.783 kcal (2) G-P(sol) polarization free energy of solvation -77.513 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.296 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.741 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.772 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.555 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds