Wall clock time and date at job start Mon Mar 30 2020 01:20:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46898 * 111.00294 * 2 1 4 4 C 1.46902 * 111.00328 * 123.95805 * 2 1 3 5 5 C 1.53002 * 109.46999 * 169.99844 * 4 2 1 6 6 N 1.46505 * 109.46865 * 179.97438 * 5 4 2 7 7 C 1.46497 * 119.99691 * 90.00065 * 6 5 4 8 8 C 1.53001 * 109.47133 * 89.99917 * 7 6 5 9 9 H 1.09000 * 109.99254 * 58.91607 * 8 7 6 10 10 C 1.54106 * 109.87790 * 179.97438 * 8 7 6 11 11 C 1.54810 * 104.18526 * 121.45619 * 10 8 7 12 12 C 1.54991 * 102.09350 * 20.88072 * 11 10 8 13 13 O 1.43745 * 109.87879 * 297.82713 * 8 7 6 14 14 C 1.34769 * 119.99897 * 270.00098 * 6 5 4 15 15 O 1.21695 * 119.99632 * 179.97438 * 14 6 5 16 16 C 1.46377 * 120.00480 * 359.97438 * 14 6 5 17 17 H 1.08004 * 119.99669 * 0.02562 * 16 14 6 18 18 C 1.40040 * 120.00066 * 180.02562 * 16 14 6 19 19 N 1.30666 * 120.00463 * 359.97438 * 18 16 14 20 20 Si 1.86802 * 119.99873 * 179.97438 * 18 16 14 21 21 H 1.48510 * 109.47014 * 89.99810 * 20 18 16 22 22 H 1.48501 * 109.47184 * 209.99642 * 20 18 16 23 23 H 1.48497 * 109.47366 * 329.99915 * 20 18 16 24 24 H 1.09003 * 109.46537 * 296.04490 * 1 2 3 25 25 H 1.08990 * 109.47294 * 56.04125 * 1 2 3 26 26 H 1.08996 * 109.46708 * 176.04805 * 1 2 3 27 27 H 1.08997 * 109.47628 * 183.95690 * 3 2 1 28 28 H 1.09009 * 109.46852 * 303.96096 * 3 2 1 29 29 H 1.08999 * 109.46943 * 63.95468 * 3 2 1 30 30 H 1.09001 * 109.47328 * 49.99687 * 4 2 1 31 31 H 1.09003 * 109.46585 * 289.99576 * 4 2 1 32 32 H 1.09001 * 109.47209 * 59.99770 * 5 4 2 33 33 H 1.08998 * 109.47234 * 299.99806 * 5 4 2 34 34 H 1.09002 * 109.47397 * 329.99716 * 7 6 5 35 35 H 1.09004 * 109.47076 * 209.99915 * 7 6 5 36 36 H 1.09000 * 110.48246 * 240.13228 * 10 8 7 37 37 H 1.08996 * 110.48742 * 2.64480 * 10 8 7 38 38 H 1.09005 * 110.90592 * 139.08047 * 11 10 8 39 39 H 1.09005 * 110.90412 * 262.68111 * 11 10 8 40 40 H 1.08993 * 110.62131 * 81.47823 * 12 11 10 41 41 H 1.09004 * 110.61350 * 204.31822 * 12 11 10 42 42 H 0.96999 * 120.00711 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.9955 -0.7661 1.1375 5 6 3.5045 -0.9554 0.9701 6 7 4.0297 -1.7188 2.1049 7 6 4.0866 -3.1813 2.0403 8 6 5.4326 -3.6140 1.4554 9 1 6.2466 -3.2346 2.0731 10 6 5.5027 -5.1518 1.3837 11 6 5.7383 -5.4513 -0.1167 12 6 6.3096 -4.1053 -0.6307 13 8 5.5648 -3.1167 0.1132 14 6 4.4605 -1.0758 3.2082 15 8 4.8963 -1.7100 4.1509 16 6 4.4042 0.3855 3.2725 17 1 4.0170 0.9484 2.4360 18 6 4.8523 1.0537 4.4188 19 7 5.3202 0.3728 5.4311 20 14 4.7811 2.9186 4.5006 21 1 3.4749 3.3396 5.0681 22 1 5.8804 3.4185 5.3647 23 1 4.9311 3.4801 3.1341 24 1 -0.3632 0.4513 0.9234 25 1 -0.3633 0.5740 -0.8523 26 1 -0.3632 -1.0252 -0.0708 27 1 3.0828 1.3432 -0.0709 28 1 1.5897 1.9163 -0.8524 29 1 1.7045 1.8723 0.9233 30 1 1.5091 -1.7407 1.1756 31 1 1.7977 -0.2248 2.0627 32 1 3.9910 0.0193 0.9321 33 1 3.7024 -1.4966 0.0449 34 1 3.2798 -3.5486 1.4059 35 1 3.9767 -3.5938 3.0432 36 1 6.3341 -5.5240 1.9823 37 1 4.5643 -5.5925 1.7201 38 1 6.4632 -6.2554 -0.2437 39 1 4.8004 -5.6923 -0.6172 40 1 7.3741 -4.0304 -0.4090 41 1 6.1331 -3.9972 -1.7009 42 1 5.6310 0.8356 6.2249 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000331042600.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:20:57 Heat of formation + Delta-G solvation = -75.696622 kcal Electronic energy + Delta-G solvation = -22102.711912 eV Core-core repulsion = 18889.988391 eV Total energy + Delta-G solvation = -3212.723521 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 270.173 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -39.22259 -37.81691 -36.64387 -33.85380 -32.43727 -31.85908 -30.46002 -28.07547 -27.26571 -26.56060 -24.53529 -23.28621 -21.88796 -20.69337 -20.60062 -18.98340 -16.59438 -16.11890 -15.78520 -15.42608 -15.06420 -14.90328 -14.80875 -14.30697 -14.10726 -13.66818 -13.37738 -12.94899 -12.59850 -12.34046 -12.07671 -11.86510 -11.54794 -11.47178 -11.37876 -11.27808 -11.21926 -11.11273 -10.94491 -10.74313 -10.70631 -10.47680 -10.33769 -10.19637 -9.85752 -9.27892 -8.83213 -8.02007 -7.55115 -7.14780 -6.16977 -4.60628 3.13353 3.20830 3.23782 4.04557 4.20788 4.27691 4.56954 4.78388 4.86497 5.01797 5.18784 5.41043 5.44893 5.49681 5.53785 5.66369 5.75149 5.82002 5.82898 5.86212 5.88702 5.92773 5.99335 6.00498 6.07784 6.15486 6.25264 6.30514 6.35442 6.47060 6.59299 6.63811 6.88573 7.32504 7.34570 7.37953 7.48202 7.75391 8.19478 8.42037 9.05254 9.48545 10.60696 10.79961 Molecular weight = 270.17amu Principal moments of inertia in cm(-1) A = 0.013011 B = 0.007392 C = 0.005261 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2151.569952 B = 3787.095534 C = 5321.009935 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 N -0.546 5.546 3 C 0.022 3.978 4 C 0.037 3.963 5 C 0.139 3.861 6 N -0.635 5.635 7 C 0.133 3.867 8 C 0.063 3.937 9 H 0.071 0.929 10 C -0.149 4.149 11 C -0.153 4.153 12 C 0.044 3.956 13 O -0.363 6.363 14 C 0.558 3.442 15 O -0.580 6.580 16 C -0.539 4.539 17 H 0.070 0.930 18 C 0.088 3.912 19 N -0.768 5.768 20 Si 0.901 3.099 21 H -0.273 1.273 22 H -0.279 1.279 23 H -0.264 1.264 24 H 0.022 0.978 25 H 0.062 0.938 26 H 0.063 0.937 27 H 0.075 0.925 28 H 0.059 0.941 29 H 0.027 0.973 30 H 0.062 0.938 31 H 0.044 0.956 32 H 0.076 0.924 33 H 0.068 0.932 34 H 0.057 0.943 35 H 0.082 0.918 36 H 0.071 0.929 37 H 0.076 0.924 38 H 0.073 0.927 39 H 0.073 0.927 40 H 0.053 0.947 41 H 0.086 0.914 42 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.851 -5.123 -11.282 12.975 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 N -0.270 5.270 3 C -0.127 4.127 4 C -0.092 4.092 5 C 0.014 3.986 6 N -0.371 5.371 7 C 0.008 3.992 8 C 0.004 3.996 9 H 0.089 0.911 10 C -0.188 4.188 11 C -0.191 4.191 12 C -0.033 4.033 13 O -0.282 6.282 14 C 0.364 3.636 15 O -0.463 6.463 16 C -0.576 4.576 17 H 0.088 0.912 18 C -0.131 4.131 19 N -0.397 5.397 20 Si 0.726 3.274 21 H -0.198 1.198 22 H -0.204 1.204 23 H -0.188 1.188 24 H 0.041 0.959 25 H 0.081 0.919 26 H 0.082 0.918 27 H 0.093 0.907 28 H 0.078 0.922 29 H 0.046 0.954 30 H 0.081 0.919 31 H 0.062 0.938 32 H 0.094 0.906 33 H 0.086 0.914 34 H 0.076 0.924 35 H 0.100 0.900 36 H 0.090 0.910 37 H 0.094 0.906 38 H 0.091 0.909 39 H 0.092 0.908 40 H 0.071 0.929 41 H 0.104 0.896 42 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -3.450 -5.491 -11.052 12.815 hybrid contribution -0.262 1.119 0.836 1.421 sum -3.712 -4.373 -10.217 11.716 Atomic orbital electron populations 1.22332 0.88250 1.01641 0.99972 1.61989 1.07077 1.13975 1.43999 1.22431 1.01542 0.88769 0.99939 1.22676 0.97961 0.97283 0.91279 1.21076 0.90748 0.97439 0.89327 1.47896 1.67823 1.03554 1.17817 1.21200 0.93597 0.84295 1.00128 1.23354 1.00454 0.91506 0.84273 0.91074 1.22954 1.02768 0.96713 0.96349 1.23105 1.01579 0.98293 0.96139 1.23471 0.95725 0.87247 0.96876 1.88959 1.74853 1.42620 1.21788 1.18242 0.77049 0.88619 0.79675 1.90588 1.50477 1.68498 1.36752 1.20978 1.44487 0.90043 1.02059 0.91156 1.25709 0.92995 0.99435 0.94978 1.70015 1.29749 1.36246 1.03679 0.86478 0.78321 0.83650 0.78998 1.19848 1.20435 1.18802 0.95932 0.91930 0.91835 0.90674 0.92187 0.95419 0.91904 0.93761 0.90577 0.91386 0.92427 0.89966 0.90983 0.90567 0.90868 0.90808 0.92854 0.89626 0.92220 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.35 9.57 60.07 0.57 0.93 16 2 N -0.55 -8.62 5.02 -251.26 -1.26 -9.88 16 3 C 0.02 0.32 9.32 60.06 0.56 0.88 16 4 C 0.04 0.67 5.28 -3.82 -0.02 0.65 16 5 C 0.14 2.80 4.83 -4.04 -0.02 2.78 16 6 N -0.63 -14.65 2.42 -175.34 -0.42 -15.08 16 7 C 0.13 2.64 4.90 -4.04 -0.02 2.62 16 8 C 0.06 1.16 3.69 -26.15 -0.10 1.06 16 9 H 0.07 1.54 8.14 -51.93 -0.42 1.12 16 10 C -0.15 -2.07 6.64 -25.20 -0.17 -2.24 16 11 C -0.15 -1.78 7.15 -24.73 -0.18 -1.96 16 12 C 0.04 0.59 7.72 38.21 0.29 0.88 16 13 O -0.36 -6.54 9.93 -35.23 -0.35 -6.89 16 14 C 0.56 15.83 7.61 -12.99 -0.10 15.73 16 15 O -0.58 -18.55 14.60 5.19 0.08 -18.48 16 16 C -0.54 -15.11 8.74 -35.63 -0.31 -15.42 16 17 H 0.07 1.83 6.00 -52.48 -0.31 1.51 16 18 C 0.09 2.46 5.50 -17.37 -0.10 2.37 16 19 N -0.77 -23.00 11.83 55.55 0.66 -22.34 16 20 Si 0.90 20.24 29.56 -169.99 -5.02 15.22 16 21 H -0.27 -6.01 7.11 56.52 0.40 -5.61 16 22 H -0.28 -6.16 7.11 56.52 0.40 -5.76 16 23 H -0.26 -5.72 7.11 56.52 0.40 -5.32 16 24 H 0.02 0.30 8.14 -51.93 -0.42 -0.12 16 25 H 0.06 0.70 8.12 -51.93 -0.42 0.28 16 26 H 0.06 0.77 8.12 -51.93 -0.42 0.35 16 27 H 0.07 1.18 6.47 -51.93 -0.34 0.85 16 28 H 0.06 0.76 8.12 -51.92 -0.42 0.33 16 29 H 0.03 0.43 8.14 -51.93 -0.42 0.01 16 30 H 0.06 1.10 8.06 -51.93 -0.42 0.68 16 31 H 0.04 0.91 8.12 -51.93 -0.42 0.49 16 32 H 0.08 1.63 4.50 -51.93 -0.23 1.40 16 33 H 0.07 1.32 7.10 -51.93 -0.37 0.95 16 34 H 0.06 1.01 8.07 -51.93 -0.42 0.59 16 35 H 0.08 1.75 7.42 -51.93 -0.39 1.36 16 36 H 0.07 0.95 8.14 -51.93 -0.42 0.52 16 37 H 0.08 0.98 7.70 -51.93 -0.40 0.58 16 38 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 39 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 40 H 0.05 0.69 8.14 -51.93 -0.42 0.26 16 41 H 0.09 0.98 8.14 -51.93 -0.42 0.56 16 42 H 0.27 7.29 8.29 -40.82 -0.34 6.95 16 LS Contribution 336.87 15.07 5.08 5.08 Total: -1.00 -33.53 336.87 -7.91 -41.44 By element: Atomic # 1 Polarization: 9.74 SS G_CDS: -7.08 Total: 2.66 kcal Atomic # 6 Polarization: 7.86 SS G_CDS: 0.42 Total: 8.29 kcal Atomic # 7 Polarization: -46.27 SS G_CDS: -1.03 Total: -47.30 kcal Atomic # 8 Polarization: -25.10 SS G_CDS: -0.27 Total: -25.37 kcal Atomic # 14 Polarization: 20.24 SS G_CDS: -5.02 Total: 15.22 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -33.53 -7.91 -41.44 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331042600.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.260 kcal (2) G-P(sol) polarization free energy of solvation -33.531 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.791 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.905 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.437 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.697 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds