Wall clock time and date at job start Mon Mar 30 2020 01:20:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46898 * 111.00294 * 2 1 4 4 C 1.46902 * 111.00328 * 123.95805 * 2 1 3 5 5 C 1.53002 * 109.46999 * 169.99844 * 4 2 1 6 6 N 1.46505 * 109.46865 * 179.97438 * 5 4 2 7 7 C 1.46497 * 119.99691 * 90.00065 * 6 5 4 8 8 C 1.53001 * 109.47133 * 89.99917 * 7 6 5 9 9 H 1.09000 * 109.99254 * 58.91607 * 8 7 6 10 10 C 1.54106 * 109.87790 * 179.97438 * 8 7 6 11 11 C 1.54810 * 104.18526 * 121.45619 * 10 8 7 12 12 C 1.54991 * 102.09350 * 20.88072 * 11 10 8 13 13 O 1.43745 * 109.87879 * 297.82713 * 8 7 6 14 14 C 1.34769 * 119.99897 * 270.00098 * 6 5 4 15 15 O 1.21695 * 119.99632 * 179.97438 * 14 6 5 16 16 C 1.46377 * 120.00480 * 359.97438 * 14 6 5 17 17 H 1.08004 * 119.99669 * 0.02562 * 16 14 6 18 18 C 1.40040 * 120.00066 * 180.02562 * 16 14 6 19 19 N 1.30666 * 120.00463 * 359.97438 * 18 16 14 20 20 Si 1.86802 * 119.99873 * 179.97438 * 18 16 14 21 21 H 1.48510 * 109.47014 * 89.99810 * 20 18 16 22 22 H 1.48501 * 109.47184 * 209.99642 * 20 18 16 23 23 H 1.48497 * 109.47366 * 329.99915 * 20 18 16 24 24 H 1.09003 * 109.46537 * 296.04490 * 1 2 3 25 25 H 1.08990 * 109.47294 * 56.04125 * 1 2 3 26 26 H 1.08996 * 109.46708 * 176.04805 * 1 2 3 27 27 H 1.08997 * 109.47628 * 183.95690 * 3 2 1 28 28 H 1.09009 * 109.46852 * 303.96096 * 3 2 1 29 29 H 1.08999 * 109.46943 * 63.95468 * 3 2 1 30 30 H 1.09001 * 109.47328 * 49.99687 * 4 2 1 31 31 H 1.09003 * 109.46585 * 289.99576 * 4 2 1 32 32 H 1.09001 * 109.47209 * 59.99770 * 5 4 2 33 33 H 1.08998 * 109.47234 * 299.99806 * 5 4 2 34 34 H 1.09002 * 109.47397 * 329.99716 * 7 6 5 35 35 H 1.09004 * 109.47076 * 209.99915 * 7 6 5 36 36 H 1.09000 * 110.48246 * 240.13228 * 10 8 7 37 37 H 1.08996 * 110.48742 * 2.64480 * 10 8 7 38 38 H 1.09005 * 110.90592 * 139.08047 * 11 10 8 39 39 H 1.09005 * 110.90412 * 262.68111 * 11 10 8 40 40 H 1.08993 * 110.62131 * 81.47823 * 12 11 10 41 41 H 1.09004 * 110.61350 * 204.31822 * 12 11 10 42 42 H 0.96999 * 120.00711 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.9955 -0.7661 1.1375 5 6 3.5045 -0.9554 0.9701 6 7 4.0297 -1.7188 2.1049 7 6 4.0866 -3.1813 2.0403 8 6 5.4326 -3.6140 1.4554 9 1 6.2466 -3.2346 2.0731 10 6 5.5027 -5.1518 1.3837 11 6 5.7383 -5.4513 -0.1167 12 6 6.3096 -4.1053 -0.6307 13 8 5.5648 -3.1167 0.1132 14 6 4.4605 -1.0758 3.2082 15 8 4.8963 -1.7100 4.1509 16 6 4.4042 0.3855 3.2725 17 1 4.0170 0.9484 2.4360 18 6 4.8523 1.0537 4.4188 19 7 5.3202 0.3728 5.4311 20 14 4.7811 2.9186 4.5006 21 1 3.4749 3.3396 5.0681 22 1 5.8804 3.4185 5.3647 23 1 4.9311 3.4801 3.1341 24 1 -0.3632 0.4513 0.9234 25 1 -0.3633 0.5740 -0.8523 26 1 -0.3632 -1.0252 -0.0708 27 1 3.0828 1.3432 -0.0709 28 1 1.5897 1.9163 -0.8524 29 1 1.7045 1.8723 0.9233 30 1 1.5091 -1.7407 1.1756 31 1 1.7977 -0.2248 2.0627 32 1 3.9910 0.0193 0.9321 33 1 3.7024 -1.4966 0.0449 34 1 3.2798 -3.5486 1.4059 35 1 3.9767 -3.5938 3.0432 36 1 6.3341 -5.5240 1.9823 37 1 4.5643 -5.5925 1.7201 38 1 6.4632 -6.2554 -0.2437 39 1 4.8004 -5.6923 -0.6172 40 1 7.3741 -4.0304 -0.4090 41 1 6.1331 -3.9972 -1.7009 42 1 5.6310 0.8356 6.2249 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000331042600.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:20:57 Heat of formation + Delta-G solvation = -100.151787 kcal Electronic energy + Delta-G solvation = -22103.772367 eV Core-core repulsion = 18889.988391 eV Total energy + Delta-G solvation = -3213.783977 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 270.173 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.66623 -39.47446 -38.21572 -35.74423 -34.59737 -33.09272 -31.85910 -29.61200 -28.62047 -28.33431 -26.07526 -24.82654 -23.13837 -22.08022 -21.96130 -20.87245 -18.48336 -17.80962 -17.44751 -16.78535 -16.49121 -16.35953 -16.23274 -15.83108 -15.65130 -15.24864 -14.63489 -14.47886 -14.20626 -14.06252 -13.45885 -13.25556 -13.19432 -12.91106 -12.82875 -12.71675 -12.55243 -12.51903 -12.45439 -12.27650 -12.24786 -12.02125 -11.91426 -11.61524 -11.53372 -10.93873 -10.65276 -9.77596 -9.33111 -9.04220 -8.28766 -6.82031 1.35220 1.36637 1.51297 2.20925 2.45336 2.65823 3.02981 3.32782 3.60546 3.73306 3.89607 4.01032 4.10330 4.20078 4.26684 4.34819 4.39890 4.48267 4.56027 4.67749 4.71180 4.75034 4.78108 4.83627 4.87914 4.93563 4.99613 5.02117 5.03569 5.08196 5.12798 5.23216 5.23632 5.38737 5.75533 6.02183 6.06205 6.15052 6.18594 6.47302 6.88430 7.43756 8.48524 8.68156 Molecular weight = 270.17amu Principal moments of inertia in cm(-1) A = 0.013011 B = 0.007392 C = 0.005261 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2151.569952 B = 3787.095534 C = 5321.009935 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 N -0.547 5.547 3 C 0.021 3.979 4 C 0.052 3.948 5 C 0.147 3.853 6 N -0.636 5.636 7 C 0.131 3.869 8 C 0.069 3.931 9 H 0.022 0.978 10 C -0.145 4.145 11 C -0.139 4.139 12 C 0.033 3.967 13 O -0.388 6.388 14 C 0.543 3.457 15 O -0.630 6.630 16 C -0.562 4.562 17 H 0.084 0.916 18 C 0.031 3.969 19 N -0.820 5.820 20 Si 0.985 3.015 21 H -0.262 1.262 22 H -0.272 1.272 23 H -0.249 1.249 24 H 0.017 0.983 25 H 0.087 0.913 26 H 0.073 0.927 27 H 0.062 0.938 28 H 0.090 0.910 29 H 0.016 0.984 30 H 0.071 0.929 31 H 0.014 0.986 32 H 0.059 0.941 33 H 0.079 0.921 34 H 0.088 0.912 35 H 0.060 0.940 36 H 0.075 0.925 37 H 0.089 0.911 38 H 0.101 0.899 39 H 0.088 0.912 40 H 0.053 0.947 41 H 0.110 0.890 42 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.999 -4.879 -13.782 15.451 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 N -0.272 5.272 3 C -0.128 4.128 4 C -0.078 4.078 5 C 0.022 3.978 6 N -0.370 5.370 7 C 0.007 3.993 8 C 0.009 3.991 9 H 0.040 0.960 10 C -0.183 4.183 11 C -0.176 4.176 12 C -0.043 4.043 13 O -0.308 6.308 14 C 0.349 3.651 15 O -0.517 6.517 16 C -0.598 4.598 17 H 0.102 0.898 18 C -0.184 4.184 19 N -0.450 5.450 20 Si 0.804 3.196 21 H -0.187 1.187 22 H -0.196 1.196 23 H -0.172 1.172 24 H 0.036 0.964 25 H 0.106 0.894 26 H 0.092 0.908 27 H 0.081 0.919 28 H 0.108 0.892 29 H 0.035 0.965 30 H 0.090 0.910 31 H 0.032 0.968 32 H 0.078 0.922 33 H 0.098 0.902 34 H 0.106 0.894 35 H 0.078 0.922 36 H 0.094 0.906 37 H 0.108 0.892 38 H 0.119 0.881 39 H 0.107 0.893 40 H 0.071 0.929 41 H 0.128 0.872 42 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -4.624 -5.267 -13.621 15.318 hybrid contribution 0.091 0.986 1.515 1.810 sum -4.533 -4.281 -12.106 13.617 Atomic orbital electron populations 1.22440 0.86166 1.02835 1.00821 1.62009 1.08923 1.14155 1.42077 1.22474 1.00987 0.88583 1.00710 1.22399 0.96527 0.97806 0.91024 1.21082 0.91936 0.96311 0.88423 1.47754 1.66887 1.05152 1.17208 1.21351 0.95853 0.82300 0.99787 1.23060 0.97345 0.94573 0.84085 0.95997 1.22933 1.03775 0.92945 0.98693 1.23085 1.02979 0.97889 0.93676 1.23789 0.95462 0.87351 0.97713 1.88910 1.75605 1.44778 1.21474 1.18573 0.76872 0.89281 0.80343 1.90535 1.52714 1.69498 1.38977 1.21417 1.44875 0.90487 1.03025 0.89772 1.26893 0.91784 1.05635 0.94057 1.70181 1.30995 1.39146 1.04689 0.85207 0.78830 0.75741 0.79789 1.18661 1.19642 1.17186 0.96392 0.89449 0.90815 0.91935 0.89178 0.96494 0.91032 0.96794 0.92223 0.90243 0.89388 0.92172 0.90584 0.89225 0.88087 0.89305 0.92859 0.87195 0.91732 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.60 9.57 127.69 1.22 1.82 16 2 N -0.55 -16.27 5.02 -948.84 -4.76 -21.03 16 3 C 0.02 0.59 9.32 127.69 1.19 1.78 16 4 C 0.05 1.87 5.28 86.30 0.46 2.33 16 5 C 0.15 5.94 4.83 86.38 0.42 6.36 16 6 N -0.64 -30.39 2.42 -826.89 -2.00 -32.39 16 7 C 0.13 5.35 4.90 86.38 0.42 5.77 16 8 C 0.07 2.57 3.69 30.97 0.11 2.69 16 9 H 0.02 1.02 8.14 -2.39 -0.02 1.00 16 10 C -0.15 -3.85 6.64 31.59 0.21 -3.64 16 11 C -0.14 -2.79 7.15 31.89 0.23 -2.56 16 12 C 0.03 0.82 7.72 72.66 0.56 1.38 16 13 O -0.39 -13.84 9.93 -148.98 -1.48 -15.32 16 14 C 0.54 32.38 7.61 86.36 0.66 33.03 16 15 O -0.63 -42.81 14.60 -4.33 -0.06 -42.87 16 16 C -0.56 -32.56 8.74 24.83 0.22 -32.35 16 17 H 0.08 4.48 6.00 -2.91 -0.02 4.46 16 18 C 0.03 1.78 5.50 85.30 0.47 2.25 16 19 N -0.82 -51.10 11.83 21.83 0.26 -50.84 16 20 Si 0.98 42.01 29.56 68.60 2.03 44.04 16 21 H -0.26 -10.65 7.11 99.48 0.71 -9.94 16 22 H -0.27 -11.17 7.11 99.48 0.71 -10.46 16 23 H -0.25 -9.89 7.11 99.48 0.71 -9.18 16 24 H 0.02 0.44 8.14 -2.39 -0.02 0.42 16 25 H 0.09 1.65 8.12 -2.39 -0.02 1.63 16 26 H 0.07 1.59 8.12 -2.39 -0.02 1.57 16 27 H 0.06 1.92 6.47 -2.39 -0.02 1.90 16 28 H 0.09 2.01 8.12 -2.38 -0.02 1.99 16 29 H 0.02 0.51 8.14 -2.39 -0.02 0.49 16 30 H 0.07 2.43 8.06 -2.39 -0.02 2.41 16 31 H 0.01 0.58 8.12 -2.39 -0.02 0.56 16 32 H 0.06 2.61 4.50 -2.39 -0.01 2.60 16 33 H 0.08 3.04 7.10 -2.39 -0.02 3.02 16 34 H 0.09 3.01 8.07 -2.39 -0.02 2.99 16 35 H 0.06 2.70 7.42 -2.39 -0.02 2.68 16 36 H 0.08 1.95 8.14 -2.39 -0.02 1.93 16 37 H 0.09 2.14 7.70 -2.39 -0.02 2.12 16 38 H 0.10 1.52 8.14 -2.38 -0.02 1.51 16 39 H 0.09 1.57 8.14 -2.38 -0.02 1.55 16 40 H 0.05 1.31 8.14 -2.39 -0.02 1.29 16 41 H 0.11 2.19 8.14 -2.38 -0.02 2.17 16 42 H 0.27 15.42 8.29 -92.71 -0.77 14.65 16 Total: -1.00 -77.34 336.87 1.13 -76.21 By element: Atomic # 1 Polarization: 22.36 SS G_CDS: 0.98 Total: 23.34 kcal Atomic # 6 Polarization: 12.69 SS G_CDS: 6.17 Total: 18.85 kcal Atomic # 7 Polarization: -97.76 SS G_CDS: -6.50 Total: -104.26 kcal Atomic # 8 Polarization: -56.64 SS G_CDS: -1.54 Total: -58.18 kcal Atomic # 14 Polarization: 42.01 SS G_CDS: 2.03 Total: 44.04 kcal Total: -77.34 1.13 -76.21 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331042600.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.941 kcal (2) G-P(sol) polarization free energy of solvation -77.341 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.282 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.131 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.210 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.152 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds