Wall clock time and date at job start Mon Mar 30 2020 01:03:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.42901 * 109.46909 * 2 1 4 4 C 1.42901 * 113.99862 * 179.97438 * 3 2 1 5 5 C 1.53004 * 109.47295 * 179.97438 * 4 3 2 6 6 H 1.09005 * 109.49129 * 55.06540 * 5 4 3 7 7 C 1.53033 * 109.49967 * 175.16137 * 5 4 3 8 8 C 1.53036 * 109.54013 * 181.31712 * 7 5 4 9 9 C 1.53191 * 109.31505 * 298.63680 * 8 7 5 10 10 N 1.46924 * 108.77224 * 54.63026 * 9 8 7 11 11 C 1.37345 * 120.62975 * 126.39425 * 10 9 8 12 12 O 1.35089 * 120.00193 * 179.97438 * 11 10 9 13 13 N 1.30096 * 119.99573 * 0.02562 * 11 10 9 14 14 C 1.46510 * 119.99834 * 172.54362 * 13 11 10 15 15 C 1.50691 * 109.47252 * 113.74724 * 14 13 11 16 16 H 1.08003 * 120.00423 * 359.97438 * 15 14 13 17 17 C 1.37878 * 119.99995 * 180.02562 * 15 14 13 18 18 N 1.31515 * 119.99986 * 179.97438 * 17 15 14 19 19 Si 1.86792 * 120.00069 * 359.97438 * 17 15 14 20 20 H 1.48494 * 109.47271 * 90.00076 * 19 17 15 21 21 H 1.48500 * 109.47416 * 210.00568 * 19 17 15 22 22 H 1.48507 * 109.46991 * 330.00431 * 19 17 15 23 23 C 1.46925 * 118.74232 * 306.39415 * 10 9 8 24 24 H 1.08999 * 109.47497 * 299.99853 * 1 2 3 25 25 H 1.09002 * 109.46824 * 60.00594 * 1 2 3 26 26 H 1.09009 * 109.46743 * 179.97438 * 1 2 3 27 27 H 1.09005 * 109.47207 * 239.99824 * 2 1 3 28 28 H 1.09003 * 109.47134 * 120.00120 * 2 1 3 29 29 H 1.09001 * 109.47522 * 59.99949 * 4 3 2 30 30 H 1.09007 * 109.47315 * 300.00394 * 4 3 2 31 31 H 1.09009 * 109.45890 * 301.34053 * 7 5 4 32 32 H 1.08999 * 109.46035 * 61.29645 * 7 5 4 33 33 H 1.09008 * 109.49434 * 58.58664 * 8 7 5 34 34 H 1.08997 * 109.49733 * 178.64789 * 8 7 5 35 35 H 1.08999 * 109.58972 * 174.42202 * 9 8 7 36 36 H 1.08997 * 109.58210 * 294.70447 * 9 8 7 37 37 H 0.96707 * 114.00347 * 184.98164 * 12 11 10 38 38 H 1.09002 * 109.46595 * 233.75072 * 14 13 11 39 39 H 1.09002 * 109.47049 * 353.74374 * 14 13 11 40 40 H 0.96994 * 120.00068 * 179.97438 * 18 17 15 41 41 H 1.09000 * 109.58629 * 293.81795 * 23 10 9 42 42 H 1.09004 * 109.58925 * 173.39749 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4308 1.4601 0.0006 5 6 3.8254 2.9384 -0.0001 6 1 3.3502 3.4421 0.8418 7 6 5.3459 3.0614 0.1222 8 6 5.7388 4.5401 0.1546 9 6 5.3033 5.2089 -1.1529 10 7 3.8671 4.9703 -1.3505 11 6 3.0072 6.0187 -1.5696 12 8 1.6891 5.7847 -1.7502 13 7 3.4624 7.2369 -1.6040 14 6 2.5797 8.3378 -1.9981 15 6 2.3589 9.2510 -0.8199 16 1 2.8287 9.0331 0.1279 17 6 1.5563 10.3644 -0.9515 18 7 1.3632 11.1611 0.0769 19 14 0.7431 10.7411 -2.5904 20 1 -0.5866 10.0824 -2.6462 21 1 0.5745 12.2095 -2.7334 22 1 1.5950 10.2308 -3.6945 23 6 3.3681 3.5890 -1.3094 24 1 -0.3634 0.5138 0.8900 25 1 -0.3633 0.5138 -0.8901 26 1 -0.3633 -1.0278 -0.0005 27 1 1.8934 -0.5139 -0.8900 28 1 1.8934 -0.5139 0.8900 29 1 3.8341 0.9765 -0.8891 30 1 3.8333 0.9767 0.8908 31 1 5.6766 2.5775 1.0413 32 1 5.8192 2.5786 -0.7328 33 1 5.2461 5.0291 0.9951 34 1 6.8196 4.6269 0.2659 35 1 5.4911 6.2811 -1.0953 36 1 5.8644 4.7839 -1.9852 37 1 1.1763 6.5740 -1.9725 38 1 3.0397 8.8989 -2.8116 39 1 1.6227 7.9352 -2.3301 40 1 0.7988 11.9445 -0.0157 41 1 3.7695 3.0302 -2.1548 42 1 2.2791 3.5923 -1.3550 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000331123783.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:03:53 Heat of formation + Delta-G solvation = -63.541821 kcal Electronic energy + Delta-G solvation = -21233.682465 eV Core-core repulsion = 18021.486015 eV Total energy + Delta-G solvation = -3212.196449 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 270.173 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -39.53052 -38.35229 -37.24379 -33.73477 -33.28485 -31.99351 -31.67633 -30.63623 -27.81258 -25.84005 -24.76927 -23.00597 -22.34097 -21.80855 -20.11197 -19.24901 -17.21638 -16.84224 -16.76473 -16.34559 -16.04255 -14.96756 -14.81379 -14.49431 -14.29350 -14.13221 -13.49168 -13.43250 -13.02606 -12.89908 -12.72924 -12.56019 -12.23107 -12.04562 -11.89646 -11.61129 -11.31161 -11.04471 -10.94468 -10.89417 -10.60158 -10.52446 -10.39580 -10.24893 -9.76204 -9.52160 -9.06295 -8.64761 -8.25861 -7.05897 -6.05038 -4.03056 3.04300 3.26873 3.35608 3.37967 3.47234 3.58131 4.41022 4.60579 4.71009 4.82554 4.84185 4.87391 5.01502 5.11181 5.13231 5.19562 5.25273 5.36468 5.45259 5.46147 5.53433 5.65994 5.67337 5.70093 5.86510 5.90666 5.92551 6.05181 6.16327 6.18351 6.40903 6.44369 6.68790 7.06128 7.07829 7.25380 7.54870 7.72172 8.10466 8.54301 9.04729 9.38663 9.59650 11.08342 Molecular weight = 270.17amu Principal moments of inertia in cm(-1) A = 0.020214 B = 0.004282 C = 0.003786 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1384.856037 B = 6537.010192 C = 7393.595444 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.058 3.942 3 O -0.385 6.385 4 C 0.071 3.929 5 C -0.104 4.104 6 H 0.084 0.916 7 C -0.110 4.110 8 C -0.136 4.136 9 C 0.139 3.861 10 N -0.595 5.595 11 C 0.542 3.458 12 O -0.542 6.542 13 N -0.624 5.624 14 C 0.175 3.825 15 C -0.511 4.511 16 H 0.077 0.923 17 C 0.067 3.933 18 N -0.899 5.899 19 Si 0.876 3.124 20 H -0.276 1.276 21 H -0.284 1.284 22 H -0.266 1.266 23 C 0.140 3.860 24 H 0.063 0.937 25 H 0.064 0.936 26 H 0.068 0.932 27 H 0.046 0.954 28 H 0.045 0.955 29 H 0.049 0.951 30 H 0.049 0.951 31 H 0.063 0.937 32 H 0.063 0.937 33 H 0.070 0.930 34 H 0.074 0.926 35 H 0.106 0.894 36 H 0.055 0.945 37 H 0.415 0.585 38 H 0.038 0.962 39 H -0.025 1.025 40 H 0.264 0.736 41 H 0.055 0.945 42 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.620 -23.368 -1.923 23.898 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.019 4.019 3 O -0.304 6.304 4 C -0.006 4.006 5 C -0.124 4.124 6 H 0.103 0.897 7 C -0.147 4.147 8 C -0.174 4.174 9 C 0.017 3.983 10 N -0.322 5.322 11 C 0.229 3.771 12 O -0.343 6.343 13 N -0.372 5.372 14 C 0.046 3.954 15 C -0.550 4.550 16 H 0.095 0.905 17 C -0.134 4.134 18 N -0.538 5.538 19 Si 0.703 3.297 20 H -0.202 1.202 21 H -0.210 1.210 22 H -0.190 1.190 23 C 0.016 3.984 24 H 0.082 0.918 25 H 0.083 0.917 26 H 0.087 0.913 27 H 0.064 0.936 28 H 0.063 0.937 29 H 0.067 0.933 30 H 0.068 0.932 31 H 0.081 0.919 32 H 0.082 0.918 33 H 0.088 0.912 34 H 0.093 0.907 35 H 0.124 0.876 36 H 0.073 0.927 37 H 0.276 0.724 38 H 0.055 0.945 39 H -0.008 1.008 40 H 0.074 0.926 41 H 0.073 0.927 42 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 5.122 -23.193 -1.643 23.809 hybrid contribution -1.472 0.424 -0.936 1.795 sum 3.650 -22.769 -2.579 23.204 Atomic orbital electron populations 1.21747 0.93768 1.02019 1.03450 1.22432 0.95685 0.84016 0.99737 1.87958 1.21045 1.26055 1.95346 1.22497 0.81348 0.96738 1.00016 1.21590 0.96432 0.94001 1.00357 0.89721 1.21483 0.94097 0.97331 1.01826 1.21959 1.01087 0.95059 0.99324 1.21435 0.78303 1.03243 0.95324 1.45437 1.05322 1.02293 1.79194 1.19993 0.78739 0.87380 0.91019 1.84377 1.19326 1.43421 1.87200 1.72260 1.37753 0.96583 1.30647 1.19844 0.88522 0.89667 0.97342 1.21121 1.29101 1.07376 0.97364 0.90488 1.24969 0.96201 0.95828 0.96437 1.69899 1.38794 1.14909 1.30159 0.86852 0.80051 0.77938 0.84907 1.20213 1.20977 1.19022 1.21391 1.00689 0.81086 0.95212 0.91757 0.91687 0.91315 0.93594 0.93668 0.93297 0.93230 0.91876 0.91794 0.91153 0.90726 0.87601 0.92671 0.72365 0.94455 1.00827 0.92612 0.92669 0.88978 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.25 10.28 37.16 0.38 -0.86 16 2 C 0.06 0.51 6.66 37.16 0.25 0.76 16 3 O -0.38 -4.56 9.99 -35.23 -0.35 -4.91 16 4 C 0.07 0.70 5.32 37.16 0.20 0.90 16 5 C -0.10 -1.22 2.58 -90.50 -0.23 -1.45 16 6 H 0.08 1.18 8.14 -51.93 -0.42 0.76 16 7 C -0.11 -1.08 5.17 -26.70 -0.14 -1.21 16 8 C -0.14 -1.59 6.08 -26.61 -0.16 -1.75 16 9 C 0.14 2.00 6.45 -3.71 -0.02 1.98 16 10 N -0.59 -9.95 3.04 -175.37 -0.53 -10.49 16 11 C 0.54 11.23 8.54 -88.56 -0.76 10.47 16 12 O -0.54 -10.79 12.28 -16.97 -0.21 -11.00 16 13 N -0.62 -14.79 9.10 -63.70 -0.58 -15.37 16 14 C 0.17 4.47 5.04 -5.19 -0.03 4.44 16 15 C -0.51 -15.28 9.94 -34.44 -0.34 -15.62 16 16 H 0.08 2.57 8.06 -52.48 -0.42 2.14 16 17 C 0.07 2.00 5.47 -17.82 -0.10 1.90 16 18 N -0.90 -28.16 13.96 55.43 0.77 -27.39 16 19 Si 0.88 21.59 27.47 -169.99 -4.67 16.93 16 20 H -0.28 -6.60 7.11 56.52 0.40 -6.19 16 21 H -0.28 -6.95 7.11 56.52 0.40 -6.54 16 22 H -0.27 -6.32 6.54 56.52 0.37 -5.95 16 23 C 0.14 1.95 5.59 -3.71 -0.02 1.93 16 24 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 25 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 26 H 0.07 0.41 8.14 -51.92 -0.42 -0.01 16 27 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 28 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 29 H 0.05 0.42 8.14 -51.93 -0.42 -0.01 16 30 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 31 H 0.06 0.54 8.14 -51.92 -0.42 0.11 16 32 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 33 H 0.07 0.96 8.14 -51.92 -0.42 0.54 16 34 H 0.07 0.72 8.14 -51.93 -0.42 0.29 16 35 H 0.11 1.81 6.92 -51.93 -0.36 1.45 16 36 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 37 H 0.42 8.01 5.89 45.56 0.27 8.28 16 38 H 0.04 0.98 7.20 -51.93 -0.37 0.60 16 39 H -0.03 -0.60 4.83 -51.93 -0.25 -0.85 16 40 H 0.26 7.69 8.31 -40.82 -0.34 7.35 16 41 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 42 H 0.09 1.46 6.82 -51.93 -0.35 1.10 16 LS Contribution 335.72 15.07 5.06 5.06 Total: -1.00 -33.77 335.72 -8.06 -41.83 By element: Atomic # 1 Polarization: 10.44 SS G_CDS: -6.58 Total: 3.86 kcal Atomic # 6 Polarization: 2.46 SS G_CDS: -0.97 Total: 1.48 kcal Atomic # 7 Polarization: -52.91 SS G_CDS: -0.34 Total: -53.25 kcal Atomic # 8 Polarization: -15.36 SS G_CDS: -0.56 Total: -15.92 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -4.67 Total: 16.93 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -33.77 -8.06 -41.83 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331123783.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.709 kcal (2) G-P(sol) polarization free energy of solvation -33.772 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.481 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.061 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.833 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.542 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds