Wall clock time and date at job start Mon Mar 30 2020 01:03:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.42901 * 109.46909 * 2 1 4 4 C 1.42901 * 113.99862 * 179.97438 * 3 2 1 5 5 C 1.53004 * 109.47295 * 179.97438 * 4 3 2 6 6 H 1.09005 * 109.49129 * 55.06540 * 5 4 3 7 7 C 1.53033 * 109.49967 * 175.16137 * 5 4 3 8 8 C 1.53036 * 109.54013 * 181.31712 * 7 5 4 9 9 C 1.53191 * 109.31505 * 298.63680 * 8 7 5 10 10 N 1.46924 * 108.77224 * 54.63026 * 9 8 7 11 11 C 1.37345 * 120.62975 * 126.39425 * 10 9 8 12 12 O 1.35089 * 120.00193 * 179.97438 * 11 10 9 13 13 N 1.30096 * 119.99573 * 0.02562 * 11 10 9 14 14 C 1.46510 * 119.99834 * 172.54362 * 13 11 10 15 15 C 1.50691 * 109.47252 * 113.74724 * 14 13 11 16 16 H 1.08003 * 120.00423 * 359.97438 * 15 14 13 17 17 C 1.37878 * 119.99995 * 180.02562 * 15 14 13 18 18 N 1.31515 * 119.99986 * 179.97438 * 17 15 14 19 19 Si 1.86792 * 120.00069 * 359.97438 * 17 15 14 20 20 H 1.48494 * 109.47271 * 90.00076 * 19 17 15 21 21 H 1.48500 * 109.47416 * 210.00568 * 19 17 15 22 22 H 1.48507 * 109.46991 * 330.00431 * 19 17 15 23 23 C 1.46925 * 118.74232 * 306.39415 * 10 9 8 24 24 H 1.08999 * 109.47497 * 299.99853 * 1 2 3 25 25 H 1.09002 * 109.46824 * 60.00594 * 1 2 3 26 26 H 1.09009 * 109.46743 * 179.97438 * 1 2 3 27 27 H 1.09005 * 109.47207 * 239.99824 * 2 1 3 28 28 H 1.09003 * 109.47134 * 120.00120 * 2 1 3 29 29 H 1.09001 * 109.47522 * 59.99949 * 4 3 2 30 30 H 1.09007 * 109.47315 * 300.00394 * 4 3 2 31 31 H 1.09009 * 109.45890 * 301.34053 * 7 5 4 32 32 H 1.08999 * 109.46035 * 61.29645 * 7 5 4 33 33 H 1.09008 * 109.49434 * 58.58664 * 8 7 5 34 34 H 1.08997 * 109.49733 * 178.64789 * 8 7 5 35 35 H 1.08999 * 109.58972 * 174.42202 * 9 8 7 36 36 H 1.08997 * 109.58210 * 294.70447 * 9 8 7 37 37 H 0.96707 * 114.00347 * 184.98164 * 12 11 10 38 38 H 1.09002 * 109.46595 * 233.75072 * 14 13 11 39 39 H 1.09002 * 109.47049 * 353.74374 * 14 13 11 40 40 H 0.96994 * 120.00068 * 179.97438 * 18 17 15 41 41 H 1.09000 * 109.58629 * 293.81795 * 23 10 9 42 42 H 1.09004 * 109.58925 * 173.39749 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4308 1.4601 0.0006 5 6 3.8254 2.9384 -0.0001 6 1 3.3502 3.4421 0.8418 7 6 5.3459 3.0614 0.1222 8 6 5.7388 4.5401 0.1546 9 6 5.3033 5.2089 -1.1529 10 7 3.8671 4.9703 -1.3505 11 6 3.0072 6.0187 -1.5696 12 8 1.6891 5.7847 -1.7502 13 7 3.4624 7.2369 -1.6040 14 6 2.5797 8.3378 -1.9981 15 6 2.3589 9.2510 -0.8199 16 1 2.8287 9.0331 0.1279 17 6 1.5563 10.3644 -0.9515 18 7 1.3632 11.1611 0.0769 19 14 0.7431 10.7411 -2.5904 20 1 -0.5866 10.0824 -2.6462 21 1 0.5745 12.2095 -2.7334 22 1 1.5950 10.2308 -3.6945 23 6 3.3681 3.5890 -1.3094 24 1 -0.3634 0.5138 0.8900 25 1 -0.3633 0.5138 -0.8901 26 1 -0.3633 -1.0278 -0.0005 27 1 1.8934 -0.5139 -0.8900 28 1 1.8934 -0.5139 0.8900 29 1 3.8341 0.9765 -0.8891 30 1 3.8333 0.9767 0.8908 31 1 5.6766 2.5775 1.0413 32 1 5.8192 2.5786 -0.7328 33 1 5.2461 5.0291 0.9951 34 1 6.8196 4.6269 0.2659 35 1 5.4911 6.2811 -1.0953 36 1 5.8644 4.7839 -1.9852 37 1 1.1763 6.5740 -1.9725 38 1 3.0397 8.8989 -2.8116 39 1 1.6227 7.9352 -2.3301 40 1 0.7988 11.9445 -0.0157 41 1 3.7695 3.0302 -2.1548 42 1 2.2791 3.5923 -1.3550 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000331123783.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:03:52 Heat of formation + Delta-G solvation = -90.135220 kcal Electronic energy + Delta-G solvation = -21234.835641 eV Core-core repulsion = 18021.486015 eV Total energy + Delta-G solvation = -3213.349626 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 270.173 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.85409 -39.50894 -38.31836 -35.52830 -34.80801 -33.59135 -32.90262 -31.49176 -29.72711 -26.76572 -26.23716 -23.94403 -23.56612 -23.18802 -21.37304 -20.56056 -19.13267 -18.59465 -17.82226 -17.51610 -17.09087 -16.50130 -15.92371 -15.86794 -15.55880 -15.39710 -14.90862 -14.52438 -14.32731 -14.15199 -14.04736 -13.87118 -13.65698 -13.21615 -12.96743 -12.90762 -12.55208 -12.35566 -12.17116 -12.06183 -11.93831 -11.80852 -11.74684 -11.49898 -11.41510 -10.87330 -10.64346 -10.47472 -10.06161 -8.65739 -8.33534 -6.40176 1.32908 1.36804 1.48710 1.63712 1.89721 2.31663 2.76334 2.97711 3.19107 3.79038 3.88080 3.93394 4.14864 4.20276 4.25164 4.31417 4.37673 4.49035 4.54459 4.56140 4.60217 4.67043 4.71989 4.83398 4.87186 4.95406 5.03916 5.04972 5.05357 5.16581 5.16968 5.28750 5.34104 5.47559 5.50381 5.75791 5.99813 6.29325 6.36802 6.57379 6.64816 7.21944 7.73698 8.83778 Molecular weight = 270.17amu Principal moments of inertia in cm(-1) A = 0.020214 B = 0.004282 C = 0.003786 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1384.856037 B = 6537.010192 C = 7393.595444 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.052 3.948 3 O -0.418 6.418 4 C 0.074 3.926 5 C -0.100 4.100 6 H 0.051 0.949 7 C -0.101 4.101 8 C -0.130 4.130 9 C 0.132 3.868 10 N -0.591 5.591 11 C 0.547 3.453 12 O -0.539 6.539 13 N -0.663 5.663 14 C 0.185 3.815 15 C -0.529 4.529 16 H 0.019 0.981 17 C 0.007 3.993 18 N -0.948 5.948 19 Si 0.959 3.041 20 H -0.257 1.257 21 H -0.278 1.278 22 H -0.248 1.248 23 C 0.137 3.863 24 H 0.051 0.949 25 H 0.053 0.947 26 H 0.092 0.908 27 H 0.061 0.939 28 H 0.058 0.942 29 H 0.071 0.929 30 H 0.067 0.933 31 H 0.084 0.916 32 H 0.090 0.910 33 H 0.040 0.960 34 H 0.102 0.898 35 H 0.072 0.928 36 H 0.086 0.914 37 H 0.417 0.583 38 H 0.033 0.967 39 H -0.003 1.003 40 H 0.270 0.730 41 H 0.083 0.917 42 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.089 -26.101 -3.829 26.867 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.024 4.024 3 O -0.338 6.338 4 C -0.003 4.003 5 C -0.120 4.120 6 H 0.070 0.930 7 C -0.139 4.139 8 C -0.169 4.169 9 C 0.011 3.989 10 N -0.318 5.318 11 C 0.234 3.766 12 O -0.340 6.340 13 N -0.415 5.415 14 C 0.056 3.944 15 C -0.567 4.567 16 H 0.037 0.963 17 C -0.191 4.191 18 N -0.588 5.588 19 Si 0.780 3.220 20 H -0.182 1.182 21 H -0.203 1.203 22 H -0.172 1.172 23 C 0.015 3.985 24 H 0.070 0.930 25 H 0.072 0.928 26 H 0.110 0.890 27 H 0.080 0.920 28 H 0.076 0.924 29 H 0.089 0.911 30 H 0.085 0.915 31 H 0.102 0.898 32 H 0.109 0.891 33 H 0.059 0.941 34 H 0.120 0.880 35 H 0.091 0.909 36 H 0.104 0.896 37 H 0.278 0.722 38 H 0.051 0.949 39 H 0.014 0.986 40 H 0.079 0.921 41 H 0.101 0.899 42 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 5.610 -25.999 -3.535 26.831 hybrid contribution -1.577 1.163 -0.224 1.973 sum 4.033 -24.836 -3.759 25.440 Atomic orbital electron populations 1.21787 0.93852 1.03190 1.02243 1.22616 0.95737 0.82931 1.01086 1.87927 1.22241 1.28037 1.95629 1.22531 0.80742 0.95143 1.01896 1.21536 0.97773 0.95082 0.97569 0.93011 1.21464 0.92439 0.95842 1.04110 1.21926 1.02422 0.96121 0.96422 1.21645 0.77220 1.01961 0.98059 1.45908 1.05797 1.02471 1.77668 1.20413 0.79185 0.87849 0.89152 1.84401 1.19208 1.43364 1.86984 1.72258 1.37538 0.97310 1.34432 1.19555 0.89859 0.89844 0.95182 1.21306 1.29309 1.09228 0.96871 0.96285 1.26028 0.96586 0.95072 1.01365 1.70069 1.39850 1.15707 1.33183 0.85554 0.79442 0.78035 0.78945 1.18184 1.20340 1.17203 1.21596 0.99556 0.79697 0.97674 0.93009 0.92821 0.88978 0.92043 0.92361 0.91068 0.91496 0.89772 0.89140 0.94138 0.87970 0.90923 0.89596 0.72211 0.94898 0.98602 0.92146 0.89865 0.91310 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.32 10.28 71.98 0.74 -1.58 16 2 C 0.05 0.81 6.66 71.98 0.48 1.29 16 3 O -0.42 -9.29 9.99 -148.98 -1.49 -10.78 16 4 C 0.07 1.24 5.32 71.98 0.38 1.62 16 5 C -0.10 -2.16 2.58 -10.72 -0.03 -2.19 16 6 H 0.05 1.46 8.14 -2.38 -0.02 1.44 16 7 C -0.10 -1.65 5.17 30.62 0.16 -1.49 16 8 C -0.13 -2.85 6.08 30.67 0.19 -2.67 16 9 C 0.13 3.69 6.45 86.36 0.56 4.25 16 10 N -0.59 -19.50 3.04 -819.22 -2.49 -21.99 16 11 C 0.55 22.97 8.54 179.63 1.53 24.50 16 12 O -0.54 -21.57 12.28 -83.64 -1.03 -22.60 16 13 N -0.66 -32.45 9.10 -469.72 -4.28 -36.72 16 14 C 0.18 9.61 5.04 85.63 0.43 10.05 16 15 C -0.53 -33.05 9.94 25.60 0.25 -32.79 16 16 H 0.02 1.35 8.06 -2.91 -0.02 1.33 16 17 C 0.01 0.42 5.47 84.65 0.46 0.89 16 18 N -0.95 -61.41 13.96 21.45 0.30 -61.11 16 19 Si 0.96 44.66 27.47 68.60 1.88 46.55 16 20 H -0.26 -11.17 7.11 99.48 0.71 -10.47 16 21 H -0.28 -12.62 7.11 99.48 0.71 -11.91 16 22 H -0.25 -10.84 6.54 99.48 0.65 -10.19 16 23 C 0.14 3.61 5.59 86.36 0.48 4.09 16 24 H 0.05 0.89 8.14 -2.39 -0.02 0.87 16 25 H 0.05 0.91 8.14 -2.39 -0.02 0.89 16 26 H 0.09 0.92 8.14 -2.38 -0.02 0.90 16 27 H 0.06 0.75 8.14 -2.38 -0.02 0.73 16 28 H 0.06 0.74 8.14 -2.39 -0.02 0.72 16 29 H 0.07 0.90 8.14 -2.39 -0.02 0.88 16 30 H 0.07 0.91 8.14 -2.38 -0.02 0.89 16 31 H 0.08 1.09 8.14 -2.38 -0.02 1.07 16 32 H 0.09 1.08 8.14 -2.39 -0.02 1.06 16 33 H 0.04 1.12 8.14 -2.38 -0.02 1.10 16 34 H 0.10 1.69 8.14 -2.39 -0.02 1.67 16 35 H 0.07 2.55 6.92 -2.39 -0.02 2.53 16 36 H 0.09 1.90 8.14 -2.39 -0.02 1.88 16 37 H 0.42 16.07 5.89 -74.05 -0.44 15.63 16 38 H 0.03 1.72 7.20 -2.39 -0.02 1.71 16 39 H 0.00 -0.15 4.83 -2.39 -0.01 -0.16 16 40 H 0.27 16.07 8.31 -92.71 -0.77 15.30 16 41 H 0.08 1.76 8.14 -2.39 -0.02 1.74 16 42 H 0.07 2.14 6.82 -2.39 -0.02 2.13 16 Total: -1.00 -77.98 335.72 -0.96 -78.94 By element: Atomic # 1 Polarization: 21.26 SS G_CDS: 0.50 Total: 21.76 kcal Atomic # 6 Polarization: 0.32 SS G_CDS: 5.64 Total: 5.96 kcal Atomic # 7 Polarization: -113.35 SS G_CDS: -6.47 Total: -119.82 kcal Atomic # 8 Polarization: -30.86 SS G_CDS: -2.51 Total: -33.38 kcal Atomic # 14 Polarization: 44.66 SS G_CDS: 1.88 Total: 46.55 kcal Total: -77.98 -0.96 -78.94 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331123783.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.198 kcal (2) G-P(sol) polarization free energy of solvation -77.978 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.177 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.959 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.937 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.135 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds