Wall clock time and date at job start Mon Mar 30 2020 00:59:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46496 * 109.46891 * 2 1 4 4 C 1.36943 * 120.00234 * 82.67100 * 3 2 1 5 5 H 1.07999 * 119.99842 * 170.33870 * 4 3 2 6 6 C 1.38810 * 119.99724 * 350.33865 * 4 3 2 7 7 N 1.31622 * 120.00390 * 7.04626 * 6 4 3 8 8 Si 1.86799 * 119.99611 * 187.04744 * 6 4 3 9 9 H 1.48499 * 109.47083 * 90.00289 * 8 6 4 10 10 H 1.48504 * 109.46943 * 209.99701 * 8 6 4 11 11 H 1.48501 * 109.47340 * 329.99860 * 8 6 4 12 12 C 1.46501 * 119.99721 * 262.66439 * 3 2 1 13 13 H 1.09005 * 109.46934 * 174.29423 * 12 3 2 14 14 C 1.52996 * 109.47163 * 54.28890 * 12 3 2 15 15 C 1.50701 * 109.47177 * 294.29172 * 12 3 2 16 16 O 1.21280 * 120.00348 * 19.30407 * 15 12 3 17 17 N 1.34776 * 120.00204 * 199.31068 * 15 12 3 18 18 C 1.46493 * 120.00412 * 179.97438 * 17 15 12 19 19 C 1.52999 * 109.47546 * 179.97438 * 18 17 15 20 20 H 1.09001 * 110.33217 * 57.74426 * 19 18 17 21 21 C 1.54483 * 110.37355 * 180.02562 * 19 18 17 22 22 C 1.54505 * 104.05967 * 142.92025 * 21 19 18 23 23 C 1.54475 * 104.06799 * 0.02562 * 22 21 19 24 24 O 1.44427 * 104.89900 * 335.96443 * 23 22 21 25 25 H 1.08997 * 109.46954 * 66.33944 * 1 2 3 26 26 H 1.09002 * 109.47529 * 186.34284 * 1 2 3 27 27 H 1.09005 * 109.47167 * 306.33701 * 1 2 3 28 28 H 1.08995 * 109.46785 * 239.99388 * 2 1 3 29 29 H 1.09007 * 109.46954 * 119.99607 * 2 1 3 30 30 H 0.96996 * 119.99972 * 180.02562 * 7 6 4 31 31 H 1.08994 * 109.47168 * 300.00024 * 14 12 3 32 32 H 1.09002 * 109.46628 * 59.99889 * 14 12 3 33 33 H 1.09002 * 109.47350 * 179.97438 * 14 12 3 34 34 H 0.97003 * 119.99438 * 359.97438 * 17 15 12 35 35 H 1.09010 * 109.47186 * 59.99796 * 18 17 15 36 36 H 1.09002 * 109.47354 * 300.00006 * 18 17 15 37 37 H 1.08997 * 110.50751 * 24.27794 * 21 19 18 38 38 H 1.09000 * 110.50608 * 261.56397 * 21 19 18 39 39 H 1.09003 * 110.51166 * 241.35156 * 22 21 19 40 40 H 1.09005 * 110.51344 * 118.64557 * 22 21 19 41 41 H 1.08997 * 110.37972 * 94.85041 * 23 22 21 42 42 H 1.09002 * 110.37413 * 217.07940 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1039 2.0772 1.1762 5 1 2.6060 3.0330 1.2028 6 6 1.5452 1.5542 2.3343 7 7 1.0566 0.3321 2.3356 8 14 1.4869 2.5850 3.8911 9 1 0.2196 3.3582 3.9256 10 1 1.5558 1.6943 5.0774 11 1 2.6390 3.5219 3.9079 12 6 2.4151 2.0178 -1.2584 13 1 2.6516 3.0662 -1.0764 14 6 1.2657 1.9211 -2.2635 15 6 3.6287 1.3183 -1.8144 16 8 3.9086 0.1993 -1.4395 17 7 4.4031 1.9361 -2.7282 18 6 5.5830 1.2564 -3.2682 19 6 6.2797 2.1696 -4.2790 20 1 6.5567 3.1132 -3.8089 21 6 7.5283 1.4719 -4.8627 22 6 7.5486 1.9153 -6.3427 23 6 6.3103 2.8289 -6.4779 24 8 5.4221 2.4097 -5.4190 25 1 -0.3633 0.4124 -0.9413 26 1 -0.3634 -1.0214 0.1135 27 1 -0.3634 0.6090 0.8279 28 1 1.8933 -0.5139 -0.8899 29 1 1.8933 -0.5138 0.8901 30 1 0.6660 -0.0332 3.1448 31 1 1.0293 0.8728 -2.4454 32 1 0.3880 2.4271 -1.8613 33 1 1.5608 2.3952 -3.1996 34 1 4.1790 2.8310 -3.0282 35 1 5.2768 0.3345 -3.7628 36 1 6.2708 1.0217 -2.4558 37 1 7.4297 0.3889 -4.7899 38 1 8.4291 1.8098 -4.3504 39 1 7.4601 1.0515 -7.0015 40 1 8.4595 2.4724 -6.5620 41 1 6.5928 3.8732 -6.3449 42 1 5.8371 2.6854 -7.4493 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000331342933.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:59:29 Heat of formation + Delta-G solvation = -72.647498 kcal Electronic energy + Delta-G solvation = -21663.923438 eV Core-core repulsion = 18451.332137 eV Total energy + Delta-G solvation = -3212.591301 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 270.173 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.94441 -40.12678 -37.74981 -35.64661 -34.06299 -33.05501 -31.85851 -30.93354 -30.19237 -26.70455 -25.98403 -24.24264 -22.98997 -22.40289 -22.09632 -20.68637 -18.86879 -17.87524 -17.60695 -17.24523 -16.69852 -16.54018 -16.06419 -15.72935 -15.49978 -14.92481 -14.77360 -14.57283 -13.91634 -13.82853 -13.61273 -13.20210 -13.17651 -13.01631 -12.78428 -12.64959 -12.55703 -12.41766 -12.33468 -12.22475 -12.12024 -11.76959 -11.58101 -11.49918 -11.35259 -10.74356 -10.62405 -10.30991 -9.98595 -8.75877 -7.58278 -5.13983 1.50964 1.52108 1.60289 1.86518 2.28441 2.57926 2.91411 3.39389 3.61246 3.67908 3.79693 3.99645 4.11775 4.18620 4.22100 4.35763 4.46702 4.48296 4.58322 4.68251 4.79640 4.86337 4.92791 4.93673 4.98971 5.04685 5.12077 5.18018 5.19184 5.26543 5.34977 5.44153 5.57198 5.61530 5.89415 6.00047 6.19749 6.51024 6.70561 7.26888 7.47365 7.95968 8.35563 9.28876 Molecular weight = 270.17amu Principal moments of inertia in cm(-1) A = 0.031839 B = 0.004063 C = 0.003905 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 879.201317 B = 6889.830502 C = 7167.835676 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C 0.182 3.818 3 N -0.592 5.592 4 C -0.257 4.257 5 H 0.081 0.919 6 C -0.058 4.058 7 N -0.925 5.925 8 Si 0.974 3.026 9 H -0.285 1.285 10 H -0.300 1.300 11 H -0.272 1.272 12 C 0.152 3.848 13 H 0.099 0.901 14 C -0.139 4.139 15 C 0.491 3.509 16 O -0.579 6.579 17 N -0.719 5.719 18 C 0.126 3.874 19 C 0.069 3.931 20 H 0.090 0.910 21 C -0.148 4.148 22 C -0.149 4.149 23 C 0.036 3.964 24 O -0.393 6.393 25 H 0.023 0.977 26 H 0.022 0.978 27 H 0.051 0.949 28 H 0.006 0.994 29 H 0.063 0.937 30 H 0.241 0.759 31 H 0.038 0.962 32 H 0.063 0.937 33 H 0.083 0.917 34 H 0.412 0.588 35 H 0.052 0.948 36 H 0.070 0.930 37 H 0.072 0.928 38 H 0.097 0.903 39 H 0.076 0.924 40 H 0.097 0.903 41 H 0.073 0.927 42 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.478 7.575 -18.050 22.692 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.057 3.943 3 N -0.313 5.313 4 C -0.387 4.387 5 H 0.099 0.901 6 C -0.252 4.252 7 N -0.574 5.574 8 Si 0.803 3.197 9 H -0.212 1.212 10 H -0.227 1.227 11 H -0.197 1.197 12 C 0.040 3.960 13 H 0.117 0.883 14 C -0.198 4.198 15 C 0.277 3.723 16 O -0.458 6.458 17 N -0.373 5.373 18 C 0.002 3.998 19 C 0.012 3.988 20 H 0.108 0.892 21 C -0.187 4.187 22 C -0.187 4.187 23 C -0.040 4.040 24 O -0.313 6.313 25 H 0.042 0.958 26 H 0.041 0.959 27 H 0.070 0.930 28 H 0.024 0.976 29 H 0.081 0.919 30 H 0.051 0.949 31 H 0.057 0.943 32 H 0.082 0.918 33 H 0.102 0.898 34 H 0.248 0.752 35 H 0.070 0.930 36 H 0.088 0.912 37 H 0.091 0.909 38 H 0.116 0.884 39 H 0.095 0.905 40 H 0.116 0.884 41 H 0.091 0.909 42 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 11.387 6.665 -17.630 22.020 hybrid contribution -0.052 0.330 0.954 1.011 sum 11.335 6.996 -16.676 21.342 Atomic orbital electron populations 1.22189 0.98726 0.98430 0.98503 1.20692 0.92131 0.84264 0.97228 1.44148 1.73901 1.11535 1.01686 1.19732 1.29810 1.01702 0.87447 0.90138 1.25577 1.00690 0.97904 1.00994 1.70487 1.45461 1.14975 1.26487 0.85150 0.77855 0.77608 0.79043 1.21222 1.22732 1.19717 1.20514 0.91241 0.96693 0.87579 0.88308 1.22073 0.98029 1.01432 0.98239 1.22718 0.85423 0.86463 0.77734 1.90602 1.73148 1.21655 1.60385 1.46023 1.27623 1.20601 1.43059 1.21390 0.87377 0.95602 0.95406 1.23290 0.89995 0.98194 0.87357 0.89212 1.22945 0.97656 1.01515 0.96540 1.22936 0.99443 1.00534 0.95803 1.23615 0.90283 0.98488 0.91601 1.89222 1.31755 1.88334 1.22010 0.95844 0.95901 0.93031 0.97573 0.91871 0.94862 0.94277 0.91758 0.89806 0.75181 0.93003 0.91174 0.90912 0.88439 0.90493 0.88446 0.90882 0.88336 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -6.06 9.11 71.98 0.66 -5.40 16 2 C 0.18 9.97 4.29 86.38 0.37 10.34 16 3 N -0.59 -30.87 2.31 -682.20 -1.57 -32.44 16 4 C -0.26 -14.23 9.74 84.03 0.82 -13.42 16 5 H 0.08 4.20 7.71 -2.91 -0.02 4.17 16 6 C -0.06 -3.28 5.09 84.86 0.43 -2.85 16 7 N -0.93 -54.85 7.48 21.65 0.16 -54.69 16 8 Si 0.97 45.63 29.56 68.60 2.03 47.66 16 9 H -0.29 -13.08 7.11 99.48 0.71 -12.37 16 10 H -0.30 -14.36 7.11 99.48 0.71 -13.66 16 11 H -0.27 -12.13 7.11 99.48 0.71 -11.42 16 12 C 0.15 6.23 3.09 44.24 0.14 6.37 16 13 H 0.10 3.63 7.81 -2.38 -0.02 3.61 16 14 C -0.14 -4.85 8.12 71.98 0.58 -4.26 16 15 C 0.49 20.04 7.00 87.66 0.61 20.66 16 16 O -0.58 -29.38 14.48 -3.03 -0.04 -29.42 16 17 N -0.72 -21.65 5.52 -463.06 -2.56 -24.20 16 18 C 0.13 3.38 5.29 86.38 0.46 3.84 16 19 C 0.07 1.30 3.33 31.10 0.10 1.41 16 20 H 0.09 1.44 8.14 -2.39 -0.02 1.42 16 21 C -0.15 -2.10 6.63 31.61 0.21 -1.89 16 22 C -0.15 -1.65 7.09 31.61 0.22 -1.42 16 23 C 0.04 0.49 7.62 72.48 0.55 1.04 16 24 O -0.39 -8.28 11.33 -148.98 -1.69 -9.97 16 25 H 0.02 1.05 6.43 -2.39 -0.02 1.03 16 26 H 0.02 1.08 8.14 -2.39 -0.02 1.06 16 27 H 0.05 2.88 6.14 -2.38 -0.01 2.86 16 28 H 0.01 0.34 6.14 -2.39 -0.01 0.32 16 29 H 0.06 3.99 5.79 -2.38 -0.01 3.98 16 30 H 0.24 14.00 8.31 -92.71 -0.77 13.23 16 31 H 0.04 1.50 6.60 -2.39 -0.02 1.48 16 32 H 0.06 2.26 8.09 -2.39 -0.02 2.24 16 33 H 0.08 2.27 8.14 -2.39 -0.02 2.25 16 34 H 0.41 9.96 8.47 -92.71 -0.79 9.17 16 35 H 0.05 1.57 8.14 -2.38 -0.02 1.55 16 36 H 0.07 1.96 8.14 -2.39 -0.02 1.94 16 37 H 0.07 1.15 7.87 -2.39 -0.02 1.13 16 38 H 0.10 1.05 8.14 -2.39 -0.02 1.03 16 39 H 0.08 0.84 8.14 -2.39 -0.02 0.82 16 40 H 0.10 0.68 8.14 -2.38 -0.02 0.66 16 41 H 0.07 0.77 8.14 -2.39 -0.02 0.75 16 42 H 0.10 1.13 8.14 -2.39 -0.02 1.11 16 Total: -1.00 -71.97 329.20 1.70 -70.27 By element: Atomic # 1 Polarization: 18.17 SS G_CDS: 0.22 Total: 18.39 kcal Atomic # 6 Polarization: 9.24 SS G_CDS: 5.16 Total: 14.40 kcal Atomic # 7 Polarization: -107.37 SS G_CDS: -3.97 Total: -111.34 kcal Atomic # 8 Polarization: -37.65 SS G_CDS: -1.73 Total: -39.39 kcal Atomic # 14 Polarization: 45.63 SS G_CDS: 2.03 Total: 47.66 kcal Total: -71.97 1.70 -70.27 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331342933.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.375 kcal (2) G-P(sol) polarization free energy of solvation -71.975 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.350 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.702 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.272 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.647 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds