Wall clock time and date at job start Mon Mar 30 2020 00:59:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46501 * 109.47500 * 2 1 4 4 C 1.36937 * 119.99873 * 83.34464 * 3 2 1 5 5 H 1.07999 * 119.99834 * 216.03920 * 4 3 2 6 6 C 1.38809 * 119.99895 * 36.04946 * 4 3 2 7 7 N 1.31612 * 120.00299 * 28.74552 * 6 4 3 8 8 Si 1.86799 * 119.99528 * 208.74622 * 6 4 3 9 9 H 1.48501 * 109.47304 * 90.00011 * 8 6 4 10 10 H 1.48503 * 109.47560 * 329.99940 * 8 6 4 11 11 H 1.48503 * 109.47389 * 209.99900 * 8 6 4 12 12 C 1.46497 * 119.99863 * 263.34743 * 3 2 1 13 13 H 1.08998 * 109.47603 * 179.97438 * 12 3 2 14 14 C 1.53004 * 109.46912 * 59.99732 * 12 3 2 15 15 C 1.50703 * 109.47198 * 300.00080 * 12 3 2 16 16 O 1.21279 * 119.99893 * 359.97438 * 15 12 3 17 17 N 1.34778 * 119.99986 * 179.97438 * 15 12 3 18 18 C 1.46500 * 119.99825 * 179.97438 * 17 15 12 19 19 C 1.53001 * 109.47047 * 180.02562 * 18 17 15 20 20 H 1.08999 * 109.82413 * 305.70256 * 19 18 17 21 21 C 1.54378 * 109.83405 * 184.81625 * 19 18 17 22 22 C 1.55447 * 102.19050 * 219.18378 * 21 19 18 23 23 C 1.54955 * 100.98832 * 34.03759 * 22 21 19 24 24 O 1.43240 * 109.82811 * 66.59090 * 19 18 17 25 25 H 1.08996 * 109.47237 * 300.00903 * 1 2 3 26 26 H 1.09003 * 109.46779 * 60.00056 * 1 2 3 27 27 H 1.08998 * 109.47247 * 180.02562 * 1 2 3 28 28 H 1.09000 * 109.47277 * 239.99844 * 2 1 3 29 29 H 1.09003 * 109.46779 * 119.99944 * 2 1 3 30 30 H 0.97002 * 120.00399 * 5.99763 * 7 6 4 31 31 H 1.08992 * 109.47225 * 299.99559 * 14 12 3 32 32 H 1.08993 * 109.47183 * 60.00365 * 14 12 3 33 33 H 1.09009 * 109.46966 * 180.02562 * 14 12 3 34 34 H 0.97001 * 119.99969 * 0.02562 * 17 15 12 35 35 H 1.08994 * 109.47312 * 299.99936 * 18 17 15 36 36 H 1.08999 * 109.46727 * 60.00443 * 18 17 15 37 37 H 1.09007 * 110.84252 * 337.32383 * 21 19 18 38 38 H 1.08998 * 110.84850 * 100.93245 * 21 19 18 39 39 H 1.08992 * 111.06200 * 276.12262 * 22 21 19 40 40 H 1.08996 * 111.18301 * 152.00374 * 22 21 19 41 41 H 1.08995 * 110.30854 * 204.69192 * 23 22 21 42 42 H 1.08997 * 110.39091 * 82.56443 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1171 2.0725 1.1779 5 1 1.9004 3.1302 1.2030 6 6 2.4958 1.4138 2.3396 7 7 3.2754 0.3556 2.2718 8 14 1.8989 2.0294 3.9992 9 1 0.6134 1.3684 4.3392 10 1 1.6988 3.4997 3.9391 11 1 2.9101 1.7096 5.0387 12 6 2.4012 2.0227 -1.2602 13 1 2.7363 3.0409 -1.0625 14 6 1.1957 2.0569 -2.2018 15 6 3.5184 1.2415 -1.9026 16 8 3.9524 0.2470 -1.3608 17 7 4.0351 1.6479 -3.0791 18 6 5.1215 0.8888 -3.7033 19 6 5.5212 1.5587 -5.0195 20 1 4.6439 1.6770 -5.6554 21 6 6.5808 0.7006 -5.7434 22 6 7.5391 1.7800 -6.3203 23 6 7.4673 2.8612 -5.2125 24 8 6.1058 2.8393 -4.7549 25 1 -0.3633 0.5139 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3634 -1.0276 0.0005 28 1 1.8933 -0.5139 -0.8900 29 1 1.8932 -0.5138 0.8900 30 1 3.6560 0.0872 1.4208 31 1 0.8603 1.0389 -2.3996 32 1 0.3877 2.6219 -1.7373 33 1 1.4806 2.5338 -3.1397 34 1 3.6882 2.4436 -3.5122 35 1 5.9803 0.8652 -3.0326 36 1 4.7864 -0.1295 -3.9006 37 1 7.1041 0.0544 -5.0385 38 1 6.1262 0.1161 -6.5432 39 1 7.1685 2.1656 -7.2700 40 1 8.5522 1.3918 -6.4251 41 1 7.7128 3.8405 -5.6231 42 1 8.1450 2.6134 -4.3955 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000331342935.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:59:32 Heat of formation + Delta-G solvation = -68.883857 kcal Electronic energy + Delta-G solvation = -21775.405110 eV Core-core repulsion = 18562.977012 eV Total energy + Delta-G solvation = -3212.428097 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 270.173 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -39.86768 -38.86360 -35.91952 -34.18204 -32.43043 -32.14889 -30.69218 -29.77909 -28.02023 -25.65976 -23.99995 -22.82560 -21.98249 -21.32175 -20.62137 -19.09841 -17.34579 -17.14837 -16.48914 -15.87234 -15.55142 -14.78589 -14.40555 -14.27381 -13.83008 -13.52059 -13.41324 -13.32174 -12.83000 -12.45600 -12.31049 -12.02956 -12.00027 -11.78420 -11.61040 -11.52545 -11.43356 -11.10881 -11.07030 -10.62119 -10.58410 -10.16479 -9.99389 -9.72477 -9.70287 -9.36108 -8.81109 -8.51695 -8.22283 -6.70707 -5.89712 -3.24575 3.44899 3.53618 3.56846 3.58790 3.75278 3.86072 4.20125 4.52205 4.60856 4.67496 4.89644 4.97448 5.17656 5.28651 5.39053 5.45271 5.46353 5.52350 5.53306 5.61619 5.72741 5.85833 5.93989 5.96915 6.07648 6.19781 6.35773 6.54300 6.61392 6.66035 6.78800 6.83532 6.90395 7.01770 7.29384 7.60927 8.07190 8.22303 8.72547 9.04504 9.27705 9.94677 10.39326 11.29396 Molecular weight = 270.17amu Principal moments of inertia in cm(-1) A = 0.028116 B = 0.004346 C = 0.004117 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 995.620223 B = 6441.558482 C = 6798.645855 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.139 3.861 3 N -0.562 5.562 4 C -0.365 4.365 5 H 0.052 0.948 6 C -0.013 4.013 7 N -0.895 5.895 8 Si 1.063 2.937 9 H -0.292 1.292 10 H -0.292 1.292 11 H -0.291 1.291 12 C 0.150 3.850 13 H 0.087 0.913 14 C -0.152 4.152 15 C 0.488 3.512 16 O -0.526 6.526 17 N -0.739 5.739 18 C 0.111 3.889 19 C 0.070 3.930 20 H 0.085 0.915 21 C -0.149 4.149 22 C -0.156 4.156 23 C 0.049 3.951 24 O -0.374 6.374 25 H 0.052 0.948 26 H 0.038 0.962 27 H 0.032 0.968 28 H 0.036 0.964 29 H 0.070 0.930 30 H 0.283 0.717 31 H 0.052 0.948 32 H 0.063 0.937 33 H 0.044 0.956 34 H 0.396 0.604 35 H 0.064 0.936 36 H 0.069 0.931 37 H 0.082 0.918 38 H 0.084 0.916 39 H 0.078 0.922 40 H 0.083 0.917 41 H 0.084 0.916 42 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.355 3.041 -18.283 19.039 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.013 3.987 3 N -0.281 5.281 4 C -0.494 4.494 5 H 0.070 0.930 6 C -0.219 4.219 7 N -0.532 5.532 8 Si 0.893 3.107 9 H -0.220 1.220 10 H -0.218 1.218 11 H -0.217 1.217 12 C 0.038 3.962 13 H 0.104 0.896 14 C -0.211 4.211 15 C 0.273 3.727 16 O -0.400 6.400 17 N -0.394 5.394 18 C -0.014 4.014 19 C 0.012 3.988 20 H 0.103 0.897 21 C -0.187 4.187 22 C -0.193 4.193 23 C -0.027 4.027 24 O -0.293 6.293 25 H 0.072 0.928 26 H 0.057 0.943 27 H 0.051 0.949 28 H 0.054 0.946 29 H 0.088 0.912 30 H 0.094 0.906 31 H 0.071 0.929 32 H 0.082 0.918 33 H 0.063 0.937 34 H 0.229 0.771 35 H 0.082 0.918 36 H 0.087 0.913 37 H 0.101 0.899 38 H 0.103 0.897 39 H 0.096 0.904 40 H 0.101 0.899 41 H 0.102 0.898 42 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 4.570 2.132 -16.080 16.853 hybrid contribution 0.149 0.539 -2.050 2.125 sum 4.719 2.671 -18.131 18.924 Atomic orbital electron populations 1.22317 1.00153 0.98670 1.00981 1.20823 0.90660 0.86267 1.00901 1.43823 1.71156 1.11999 1.01125 1.19847 1.47419 0.95344 0.86803 0.93012 1.25894 0.95421 0.98494 1.02058 1.70601 1.24783 1.27802 1.30034 0.83574 0.76157 0.75019 0.75939 1.21951 1.21793 1.21741 1.20722 0.90168 0.96764 0.88572 0.89555 1.22246 0.99326 1.01634 0.97914 1.22931 0.84441 0.86083 0.79226 1.90640 1.61003 1.26393 1.61918 1.46348 1.38020 1.30957 1.24099 1.21613 0.91444 0.95206 0.93113 1.23019 0.96591 0.83773 0.95432 0.89690 1.23140 0.96668 0.98364 1.00497 1.23285 1.00613 0.96179 0.99255 1.23387 0.84334 0.99436 0.95590 1.88482 1.25442 1.32309 1.83072 0.92841 0.94260 0.94884 0.94604 0.91242 0.90559 0.92853 0.91826 0.93666 0.77061 0.91751 0.91270 0.89931 0.89690 0.90374 0.89856 0.89752 0.92123 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.51 10.01 37.16 0.37 -3.13 16 2 C 0.14 3.52 4.36 -4.04 -0.02 3.50 16 3 N -0.56 -14.50 1.90 -166.98 -0.32 -14.82 16 4 C -0.36 -10.41 9.23 -15.06 -0.14 -10.55 16 5 H 0.05 1.48 7.98 -52.49 -0.42 1.06 16 6 C -0.01 -0.37 4.83 -17.43 -0.08 -0.45 16 7 N -0.89 -28.23 12.22 55.49 0.68 -27.56 16 8 Si 1.06 25.98 30.00 -169.99 -5.10 20.88 16 9 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 10 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 11 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 12 C 0.15 3.22 3.12 -69.08 -0.22 3.01 16 13 H 0.09 1.86 7.89 -51.93 -0.41 1.45 16 14 C -0.15 -2.61 8.16 37.16 0.30 -2.31 16 15 C 0.49 10.42 6.85 -10.98 -0.08 10.35 16 16 O -0.53 -13.59 14.63 5.56 0.08 -13.50 16 17 N -0.74 -12.10 5.42 -60.30 -0.33 -12.43 16 18 C 0.11 1.60 5.21 -4.04 -0.02 1.58 16 19 C 0.07 0.76 3.56 -26.01 -0.09 0.67 16 20 H 0.09 0.83 8.14 -51.93 -0.42 0.41 16 21 C -0.15 -1.23 6.56 -24.71 -0.16 -1.39 16 22 C -0.16 -1.11 7.16 -24.40 -0.17 -1.29 16 23 C 0.05 0.45 7.78 38.19 0.30 0.75 16 24 O -0.37 -4.64 10.99 -35.23 -0.39 -5.03 16 25 H 0.05 1.22 8.14 -51.93 -0.42 0.80 16 26 H 0.04 0.77 6.19 -51.93 -0.32 0.45 16 27 H 0.03 0.63 8.14 -51.93 -0.42 0.21 16 28 H 0.04 0.90 6.48 -51.93 -0.34 0.56 16 29 H 0.07 2.01 5.46 -51.93 -0.28 1.73 16 30 H 0.28 9.33 7.35 -40.82 -0.30 9.03 16 31 H 0.05 0.94 6.67 -51.93 -0.35 0.60 16 32 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 33 H 0.04 0.62 7.56 -51.92 -0.39 0.23 16 34 H 0.40 5.53 7.89 -40.82 -0.32 5.21 16 35 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 36 H 0.07 1.00 8.14 -51.93 -0.42 0.57 16 37 H 0.08 0.70 7.85 -51.92 -0.41 0.30 16 38 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 39 H 0.08 0.50 8.14 -51.93 -0.42 0.07 16 40 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 41 H 0.08 0.66 8.14 -51.93 -0.42 0.23 16 42 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 LS Contribution 334.19 15.07 5.04 5.04 Total: -1.00 -34.46 334.19 -7.33 -41.79 By element: Atomic # 1 Polarization: 11.88 SS G_CDS: -6.98 Total: 4.89 kcal Atomic # 6 Polarization: 0.75 SS G_CDS: -0.01 Total: 0.74 kcal Atomic # 7 Polarization: -54.84 SS G_CDS: 0.03 Total: -54.80 kcal Atomic # 8 Polarization: -18.22 SS G_CDS: -0.31 Total: -18.53 kcal Atomic # 14 Polarization: 25.98 SS G_CDS: -5.10 Total: 20.88 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -34.46 -7.33 -41.79 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331342935.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.097 kcal (2) G-P(sol) polarization free energy of solvation -34.456 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.553 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.331 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.787 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.884 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds