Wall clock time and date at job start Mon Mar 30 2020 00:59:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46501 * 109.47500 * 2 1 4 4 C 1.36937 * 119.99873 * 83.34464 * 3 2 1 5 5 H 1.07999 * 119.99834 * 216.03920 * 4 3 2 6 6 C 1.38809 * 119.99895 * 36.04946 * 4 3 2 7 7 N 1.31612 * 120.00299 * 28.74552 * 6 4 3 8 8 Si 1.86799 * 119.99528 * 208.74622 * 6 4 3 9 9 H 1.48501 * 109.47304 * 90.00011 * 8 6 4 10 10 H 1.48503 * 109.47560 * 329.99940 * 8 6 4 11 11 H 1.48503 * 109.47389 * 209.99900 * 8 6 4 12 12 C 1.46497 * 119.99863 * 263.34743 * 3 2 1 13 13 H 1.08998 * 109.47603 * 179.97438 * 12 3 2 14 14 C 1.53004 * 109.46912 * 59.99732 * 12 3 2 15 15 C 1.50703 * 109.47198 * 300.00080 * 12 3 2 16 16 O 1.21279 * 119.99893 * 359.97438 * 15 12 3 17 17 N 1.34778 * 119.99986 * 179.97438 * 15 12 3 18 18 C 1.46500 * 119.99825 * 179.97438 * 17 15 12 19 19 C 1.53001 * 109.47047 * 180.02562 * 18 17 15 20 20 H 1.08999 * 109.82413 * 305.70256 * 19 18 17 21 21 C 1.54378 * 109.83405 * 184.81625 * 19 18 17 22 22 C 1.55447 * 102.19050 * 219.18378 * 21 19 18 23 23 C 1.54955 * 100.98832 * 34.03759 * 22 21 19 24 24 O 1.43240 * 109.82811 * 66.59090 * 19 18 17 25 25 H 1.08996 * 109.47237 * 300.00903 * 1 2 3 26 26 H 1.09003 * 109.46779 * 60.00056 * 1 2 3 27 27 H 1.08998 * 109.47247 * 180.02562 * 1 2 3 28 28 H 1.09000 * 109.47277 * 239.99844 * 2 1 3 29 29 H 1.09003 * 109.46779 * 119.99944 * 2 1 3 30 30 H 0.97002 * 120.00399 * 5.99763 * 7 6 4 31 31 H 1.08992 * 109.47225 * 299.99559 * 14 12 3 32 32 H 1.08993 * 109.47183 * 60.00365 * 14 12 3 33 33 H 1.09009 * 109.46966 * 180.02562 * 14 12 3 34 34 H 0.97001 * 119.99969 * 0.02562 * 17 15 12 35 35 H 1.08994 * 109.47312 * 299.99936 * 18 17 15 36 36 H 1.08999 * 109.46727 * 60.00443 * 18 17 15 37 37 H 1.09007 * 110.84252 * 337.32383 * 21 19 18 38 38 H 1.08998 * 110.84850 * 100.93245 * 21 19 18 39 39 H 1.08992 * 111.06200 * 276.12262 * 22 21 19 40 40 H 1.08996 * 111.18301 * 152.00374 * 22 21 19 41 41 H 1.08995 * 110.30854 * 204.69192 * 23 22 21 42 42 H 1.08997 * 110.39091 * 82.56443 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1171 2.0725 1.1779 5 1 1.9004 3.1302 1.2030 6 6 2.4958 1.4138 2.3396 7 7 3.2754 0.3556 2.2718 8 14 1.8989 2.0294 3.9992 9 1 0.6134 1.3684 4.3392 10 1 1.6988 3.4997 3.9391 11 1 2.9101 1.7096 5.0387 12 6 2.4012 2.0227 -1.2602 13 1 2.7363 3.0409 -1.0625 14 6 1.1957 2.0569 -2.2018 15 6 3.5184 1.2415 -1.9026 16 8 3.9524 0.2470 -1.3608 17 7 4.0351 1.6479 -3.0791 18 6 5.1215 0.8888 -3.7033 19 6 5.5212 1.5587 -5.0195 20 1 4.6439 1.6770 -5.6554 21 6 6.5808 0.7006 -5.7434 22 6 7.5391 1.7800 -6.3203 23 6 7.4673 2.8612 -5.2125 24 8 6.1058 2.8393 -4.7549 25 1 -0.3633 0.5139 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3634 -1.0276 0.0005 28 1 1.8933 -0.5139 -0.8900 29 1 1.8932 -0.5138 0.8900 30 1 3.6560 0.0872 1.4208 31 1 0.8603 1.0389 -2.3996 32 1 0.3877 2.6219 -1.7373 33 1 1.4806 2.5338 -3.1397 34 1 3.6882 2.4436 -3.5122 35 1 5.9803 0.8652 -3.0326 36 1 4.7864 -0.1295 -3.9006 37 1 7.1041 0.0544 -5.0385 38 1 6.1262 0.1161 -6.5432 39 1 7.1685 2.1656 -7.2700 40 1 8.5522 1.3918 -6.4251 41 1 7.7128 3.8405 -5.6231 42 1 8.1450 2.6134 -4.3955 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000331342935.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:59:31 Heat of formation + Delta-G solvation = -93.536940 kcal Electronic energy + Delta-G solvation = -21776.474148 eV Core-core repulsion = 18562.977012 eV Total energy + Delta-G solvation = -3213.497135 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 270.173 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.05504 -40.23060 -37.80403 -35.70324 -34.11881 -33.14628 -32.43891 -30.99794 -29.84381 -26.77213 -25.99818 -24.39612 -22.91149 -22.46113 -22.16742 -20.75459 -19.36712 -18.03478 -17.91656 -17.18910 -16.80211 -16.45041 -15.85506 -15.68915 -15.47817 -15.21324 -14.84600 -14.51751 -14.32531 -13.92015 -13.87961 -13.47181 -13.35500 -13.20677 -12.76772 -12.70344 -12.57687 -12.48937 -12.38007 -12.12603 -12.01021 -11.88000 -11.74673 -11.61786 -11.39209 -10.64846 -10.56594 -10.39623 -10.02871 -8.84544 -8.11838 -5.48561 1.57935 1.65902 1.80694 1.83369 2.25827 2.68102 2.86876 3.23587 3.50069 3.52829 3.70069 3.92553 4.03439 4.14337 4.20634 4.34098 4.38103 4.39718 4.44103 4.55406 4.63679 4.77865 4.80050 4.81271 4.89579 4.92424 4.94378 5.01445 5.01979 5.05090 5.23863 5.34823 5.38515 5.52323 5.63358 5.94482 6.02660 6.41734 6.63572 7.14538 7.42282 7.82222 8.26007 8.98589 Molecular weight = 270.17amu Principal moments of inertia in cm(-1) A = 0.028116 B = 0.004346 C = 0.004117 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 995.620223 B = 6441.558482 C = 6798.645855 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.146 3.854 3 N -0.579 5.579 4 C -0.365 4.365 5 H 0.051 0.949 6 C -0.068 4.068 7 N -0.927 5.927 8 Si 1.114 2.886 9 H -0.282 1.282 10 H -0.268 1.268 11 H -0.298 1.298 12 C 0.141 3.859 13 H 0.083 0.917 14 C -0.137 4.137 15 C 0.486 3.514 16 O -0.579 6.579 17 N -0.717 5.717 18 C 0.110 3.890 19 C 0.075 3.925 20 H 0.105 0.895 21 C -0.147 4.147 22 C -0.144 4.144 23 C 0.038 3.962 24 O -0.400 6.400 25 H 0.037 0.963 26 H 0.062 0.938 27 H 0.054 0.946 28 H 0.030 0.970 29 H 0.027 0.973 30 H 0.258 0.742 31 H 0.049 0.951 32 H 0.065 0.935 33 H 0.086 0.914 34 H 0.411 0.589 35 H 0.037 0.963 36 H 0.070 0.930 37 H 0.074 0.926 38 H 0.107 0.893 39 H 0.093 0.907 40 H 0.099 0.901 41 H 0.099 0.901 42 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.462 4.329 -20.712 21.441 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.020 3.980 3 N -0.299 5.299 4 C -0.494 4.494 5 H 0.069 0.931 6 C -0.267 4.267 7 N -0.566 5.566 8 Si 0.938 3.062 9 H -0.208 1.208 10 H -0.192 1.192 11 H -0.225 1.225 12 C 0.030 3.970 13 H 0.101 0.899 14 C -0.196 4.196 15 C 0.272 3.728 16 O -0.457 6.457 17 N -0.372 5.372 18 C -0.014 4.014 19 C 0.018 3.982 20 H 0.123 0.877 21 C -0.185 4.185 22 C -0.182 4.182 23 C -0.038 4.038 24 O -0.319 6.319 25 H 0.056 0.944 26 H 0.081 0.919 27 H 0.072 0.928 28 H 0.049 0.951 29 H 0.045 0.955 30 H 0.068 0.932 31 H 0.068 0.932 32 H 0.085 0.915 33 H 0.104 0.896 34 H 0.248 0.752 35 H 0.055 0.945 36 H 0.088 0.912 37 H 0.093 0.907 38 H 0.126 0.874 39 H 0.112 0.888 40 H 0.118 0.882 41 H 0.117 0.883 42 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 3.668 3.477 -18.594 19.269 hybrid contribution 0.499 0.193 -1.431 1.528 sum 4.167 3.670 -20.025 20.781 Atomic orbital electron populations 1.22153 0.97104 1.00226 1.01265 1.20656 0.92903 0.85865 0.98563 1.43966 1.72094 1.11968 1.01891 1.20098 1.45712 0.95448 0.88188 0.93128 1.27312 0.95165 0.98370 1.05828 1.70754 1.27442 1.30014 1.28411 0.82907 0.75696 0.75929 0.71670 1.20800 1.19250 1.22475 1.20925 0.92156 0.95871 0.88038 0.89882 1.22094 0.97085 1.01976 0.98465 1.22748 0.84355 0.85395 0.80284 1.90634 1.62633 1.28776 1.63695 1.46058 1.37549 1.31042 1.22508 1.21766 0.89570 0.95686 0.94421 1.23046 0.98158 0.83702 0.93333 0.87731 1.23175 0.96189 0.98429 1.00726 1.23273 1.01320 0.94744 0.98852 1.23601 0.82806 1.01218 0.96209 1.88449 1.26985 1.32869 1.83643 0.94410 0.91907 0.92751 0.95106 0.95522 0.93181 0.93204 0.91548 0.89559 0.75245 0.94451 0.91175 0.90727 0.87441 0.88837 0.88247 0.88264 0.93104 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -6.30 10.01 71.98 0.72 -5.58 16 2 C 0.15 7.55 4.36 86.38 0.38 7.92 16 3 N -0.58 -30.30 1.90 -682.20 -1.30 -31.60 16 4 C -0.36 -21.09 9.23 84.03 0.78 -20.32 16 5 H 0.05 2.89 7.98 -2.91 -0.02 2.87 16 6 C -0.07 -4.04 4.83 84.86 0.41 -3.63 16 7 N -0.93 -61.00 12.22 21.65 0.26 -60.73 16 8 Si 1.11 53.06 30.00 68.60 2.06 55.11 16 9 H -0.28 -12.81 7.11 99.48 0.71 -12.11 16 10 H -0.27 -11.58 7.11 99.48 0.71 -10.87 16 11 H -0.30 -14.43 7.11 99.48 0.71 -13.72 16 12 C 0.14 6.01 3.12 44.25 0.14 6.15 16 13 H 0.08 3.54 7.89 -2.39 -0.02 3.52 16 14 C -0.14 -4.36 8.16 71.98 0.59 -3.78 16 15 C 0.49 20.95 6.85 87.66 0.60 21.55 16 16 O -0.58 -31.15 14.63 -3.03 -0.04 -31.20 16 17 N -0.72 -22.88 5.42 -463.06 -2.51 -25.39 16 18 C 0.11 3.13 5.21 86.38 0.45 3.58 16 19 C 0.08 1.49 3.56 31.06 0.11 1.60 16 20 H 0.11 1.70 8.14 -2.39 -0.02 1.68 16 21 C -0.15 -2.08 6.56 31.90 0.21 -1.87 16 22 C -0.14 -1.65 7.16 32.10 0.23 -1.42 16 23 C 0.04 0.63 7.78 72.65 0.57 1.20 16 24 O -0.40 -9.28 10.99 -148.98 -1.64 -10.92 16 25 H 0.04 1.69 8.14 -2.39 -0.02 1.67 16 26 H 0.06 2.34 6.19 -2.39 -0.01 2.32 16 27 H 0.05 2.04 8.14 -2.39 -0.02 2.02 16 28 H 0.03 1.58 6.48 -2.39 -0.02 1.57 16 29 H 0.03 1.62 5.46 -2.39 -0.01 1.61 16 30 H 0.26 18.05 7.35 -92.71 -0.68 17.37 16 31 H 0.05 1.63 6.67 -2.39 -0.02 1.61 16 32 H 0.07 2.10 8.14 -2.39 -0.02 2.08 16 33 H 0.09 2.02 7.56 -2.38 -0.02 2.00 16 34 H 0.41 10.59 7.89 -92.71 -0.73 9.86 16 35 H 0.04 1.27 8.14 -2.39 -0.02 1.25 16 36 H 0.07 2.00 8.14 -2.39 -0.02 1.98 16 37 H 0.07 1.18 7.85 -2.38 -0.02 1.16 16 38 H 0.11 1.07 8.14 -2.39 -0.02 1.05 16 39 H 0.09 0.82 8.14 -2.39 -0.02 0.81 16 40 H 0.10 0.84 8.14 -2.39 -0.02 0.83 16 41 H 0.10 1.35 8.14 -2.39 -0.02 1.33 16 42 H 0.05 0.93 8.14 -2.39 -0.02 0.91 16 Total: -1.00 -78.87 334.19 2.36 -76.51 By element: Atomic # 1 Polarization: 22.45 SS G_CDS: 0.36 Total: 22.80 kcal Atomic # 6 Polarization: 0.25 SS G_CDS: 5.17 Total: 5.42 kcal Atomic # 7 Polarization: -114.18 SS G_CDS: -3.54 Total: -117.73 kcal Atomic # 8 Polarization: -40.44 SS G_CDS: -1.68 Total: -42.12 kcal Atomic # 14 Polarization: 53.06 SS G_CDS: 2.06 Total: 55.11 kcal Total: -78.87 2.36 -76.51 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331342935.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.029 kcal (2) G-P(sol) polarization free energy of solvation -78.870 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.900 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.363 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.508 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.537 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds