Wall clock time and date at job start Mon Mar 30 2020 00:59:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 N 1.46504 * 109.47289 * 2 1 4 4 C 1.36936 * 119.99546 * 276.49796 * 3 2 1 5 5 H 1.08003 * 120.00288 * 141.11006 * 4 3 2 6 6 C 1.38812 * 120.00465 * 321.11278 * 4 3 2 7 7 N 1.31613 * 120.00555 * 154.16172 * 6 4 3 8 8 Si 1.86801 * 119.99515 * 334.15768 * 6 4 3 9 9 H 1.48504 * 109.47333 * 95.04631 * 8 6 4 10 10 H 1.48502 * 109.46972 * 215.04634 * 8 6 4 11 11 H 1.48501 * 109.47101 * 335.04437 * 8 6 4 12 12 C 1.46492 * 120.00322 * 96.49178 * 3 2 1 13 13 H 1.09006 * 109.47073 * 180.02562 * 12 3 2 14 14 C 1.52996 * 109.47582 * 300.00430 * 12 3 2 15 15 C 1.50705 * 109.47074 * 60.00576 * 12 3 2 16 16 O 1.21281 * 119.99485 * 0.27666 * 15 12 3 17 17 N 1.34772 * 120.00049 * 179.97438 * 15 12 3 18 18 C 1.46502 * 119.99806 * 179.97438 * 17 15 12 19 19 C 1.53003 * 109.47094 * 180.02562 * 18 17 15 20 20 H 1.09002 * 109.82370 * 305.69751 * 19 18 17 21 21 C 1.54383 * 109.82884 * 184.81469 * 19 18 17 22 22 C 1.55448 * 102.18325 * 219.17848 * 21 19 18 23 23 C 1.54945 * 100.98995 * 34.04000 * 22 21 19 24 24 O 1.43231 * 109.83200 * 66.58790 * 19 18 17 25 25 H 1.09005 * 109.47269 * 300.00547 * 1 2 3 26 26 H 1.08999 * 109.47258 * 60.00191 * 1 2 3 27 27 H 1.09002 * 109.46909 * 180.02562 * 1 2 3 28 28 H 1.08997 * 109.47578 * 239.99485 * 2 1 3 29 29 H 1.09004 * 109.47324 * 119.99331 * 2 1 3 30 30 H 0.97004 * 120.00213 * 180.02562 * 7 6 4 31 31 H 1.08998 * 109.46900 * 59.99651 * 14 12 3 32 32 H 1.08999 * 109.47206 * 179.97438 * 14 12 3 33 33 H 1.08997 * 109.46836 * 299.99972 * 14 12 3 34 34 H 0.97002 * 120.00220 * 359.97438 * 17 15 12 35 35 H 1.08998 * 109.47034 * 300.00184 * 18 17 15 36 36 H 1.08998 * 109.47071 * 60.00355 * 18 17 15 37 37 H 1.08998 * 110.84878 * 337.32243 * 21 19 18 38 38 H 1.09007 * 110.84672 * 100.93804 * 21 19 18 39 39 H 1.08995 * 111.06388 * 276.12265 * 22 21 19 40 40 H 1.08998 * 111.18296 * 152.00989 * 22 21 19 41 41 H 1.09000 * 110.30959 * 204.68393 * 23 22 21 42 42 H 1.09004 * 110.39071 * 82.56397 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1200 2.0714 -1.1783 5 1 1.8590 3.1188 -1.2150 6 6 2.5584 1.4249 -2.3258 7 7 2.1983 1.8706 -3.5107 8 14 3.6597 -0.0776 -2.1883 9 1 2.8285 -1.3071 -2.2416 10 1 4.6285 -0.0859 -3.3137 11 1 4.3975 -0.0343 -0.9003 12 6 2.3977 2.0241 1.2605 13 1 2.7333 3.0421 1.0626 14 6 1.1900 2.0591 2.1990 15 6 3.5134 1.2436 1.9065 16 8 3.9520 0.2512 1.3645 17 7 4.0278 1.6518 3.0834 18 6 5.1119 0.8927 3.7116 19 6 5.5084 1.5641 5.0281 20 1 5.7493 2.6122 4.8506 21 6 6.7294 0.8420 5.6373 22 6 6.3900 0.8466 7.1543 23 6 4.8477 0.7041 7.1124 24 8 4.4316 1.4653 5.9675 25 1 -0.3634 0.5139 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 1.8933 -0.5139 -0.8899 29 1 1.8933 -0.5137 0.8901 30 1 2.5044 1.4186 -4.3125 31 1 0.8540 1.0413 2.3969 32 1 1.4725 2.5370 3.1370 33 1 0.3831 2.6236 1.7318 34 1 3.6802 2.4482 3.5145 35 1 4.7754 -0.1249 3.9101 36 1 5.9723 0.8670 3.0430 37 1 6.8050 -0.1777 5.2600 38 1 7.6463 1.3982 5.4419 39 1 6.6850 1.7875 7.6189 40 1 6.8491 -0.0009 7.6632 41 1 4.4050 1.1137 8.0203 42 1 4.5660 -0.3422 6.9937 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000331342937.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:59:33 Heat of formation + Delta-G solvation = -86.386093 kcal Electronic energy + Delta-G solvation = -21873.004453 eV Core-core repulsion = 18659.817402 eV Total energy + Delta-G solvation = -3213.187051 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 270.173 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.02552 -40.20123 -37.76367 -35.64878 -34.16127 -33.14610 -32.71014 -31.02336 -30.30066 -26.72042 -25.95670 -24.38350 -23.20903 -22.52831 -22.13599 -20.71518 -18.79875 -18.02930 -17.75745 -17.58575 -16.87904 -16.72000 -16.03940 -15.80875 -15.29473 -15.05267 -14.84631 -14.52025 -14.44328 -13.96021 -13.83291 -13.61026 -13.38023 -13.30482 -13.07522 -12.78674 -12.67262 -12.42724 -12.34762 -12.23468 -12.08748 -12.06728 -11.71904 -11.65268 -11.37972 -10.59822 -10.53562 -10.49177 -9.96189 -8.73860 -8.24684 -5.58932 1.29590 1.38750 1.71890 1.86609 2.29632 2.47152 2.89795 3.02177 3.35699 3.54221 3.73479 3.96194 4.06664 4.19258 4.23400 4.34567 4.39176 4.42595 4.44032 4.61610 4.67928 4.75992 4.77421 4.83708 4.91113 4.93278 4.97667 5.01726 5.05189 5.07085 5.24312 5.26668 5.41046 5.56015 5.57451 5.93257 6.06307 6.16095 6.67747 6.99653 7.44762 7.65187 8.07547 8.93726 Molecular weight = 270.17amu Principal moments of inertia in cm(-1) A = 0.028679 B = 0.004797 C = 0.004469 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 976.089637 B = 5835.075201 C = 6264.485390 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.141 3.859 3 N -0.588 5.588 4 C -0.254 4.254 5 H 0.057 0.943 6 C 0.002 3.998 7 N -0.936 5.936 8 Si 0.911 3.089 9 H -0.291 1.291 10 H -0.316 1.316 11 H -0.241 1.241 12 C 0.145 3.855 13 H 0.098 0.902 14 C -0.141 4.141 15 C 0.488 3.512 16 O -0.574 6.574 17 N -0.717 5.717 18 C 0.111 3.889 19 C 0.075 3.925 20 H 0.099 0.901 21 C -0.148 4.148 22 C -0.147 4.147 23 C 0.040 3.960 24 O -0.395 6.395 25 H 0.068 0.932 26 H 0.034 0.966 27 H 0.058 0.942 28 H 0.015 0.985 29 H 0.052 0.948 30 H 0.262 0.738 31 H 0.050 0.950 32 H 0.086 0.914 33 H 0.065 0.935 34 H 0.412 0.588 35 H 0.049 0.951 36 H 0.064 0.936 37 H 0.077 0.923 38 H 0.101 0.899 39 H 0.089 0.911 40 H 0.099 0.901 41 H 0.098 0.902 42 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.569 -0.336 25.138 25.985 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.016 3.984 3 N -0.309 5.309 4 C -0.384 4.384 5 H 0.075 0.925 6 C -0.196 4.196 7 N -0.579 5.579 8 Si 0.742 3.258 9 H -0.219 1.219 10 H -0.246 1.246 11 H -0.164 1.164 12 C 0.035 3.965 13 H 0.116 0.884 14 C -0.200 4.200 15 C 0.274 3.726 16 O -0.452 6.452 17 N -0.371 5.371 18 C -0.014 4.014 19 C 0.017 3.983 20 H 0.117 0.883 21 C -0.186 4.186 22 C -0.184 4.184 23 C -0.036 4.036 24 O -0.315 6.315 25 H 0.087 0.913 26 H 0.054 0.946 27 H 0.077 0.923 28 H 0.033 0.967 29 H 0.070 0.930 30 H 0.071 0.929 31 H 0.069 0.931 32 H 0.104 0.896 33 H 0.084 0.916 34 H 0.249 0.751 35 H 0.068 0.932 36 H 0.082 0.918 37 H 0.096 0.904 38 H 0.120 0.880 39 H 0.108 0.892 40 H 0.117 0.883 41 H 0.116 0.884 42 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 6.695 -0.972 24.562 25.477 hybrid contribution 0.688 -0.700 -0.695 1.203 sum 7.383 -1.672 23.867 25.039 Atomic orbital electron populations 1.22204 0.96806 1.00704 1.01677 1.20959 0.93658 0.85441 0.98294 1.44035 1.72888 1.11786 1.02198 1.18684 1.38172 0.95807 0.85753 0.92506 1.25888 0.98576 1.00092 0.95089 1.69993 1.45698 1.44110 0.98098 0.86394 0.80868 0.80963 0.77615 1.21932 1.24563 1.16440 1.20866 0.92300 0.96428 0.86942 0.88413 1.22117 0.97158 1.02168 0.98557 1.22527 0.84169 0.85509 0.80415 1.90662 1.62304 1.28648 1.63603 1.46015 1.38027 1.31056 1.22039 1.21751 0.90221 0.95551 0.93850 1.23002 0.87331 1.00528 0.87416 0.88346 1.23169 0.97846 1.01842 0.95761 1.23276 0.94995 1.04486 0.95638 1.23584 0.95177 0.95933 0.88930 1.88441 1.37645 1.74405 1.30989 0.91275 0.94646 0.92264 0.96652 0.92996 0.92943 0.93051 0.89573 0.91560 0.75119 0.93224 0.91820 0.90434 0.88032 0.89234 0.88287 0.88368 0.92597 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -6.22 10.01 71.98 0.72 -5.50 16 2 C 0.14 6.65 4.11 86.38 0.36 7.01 16 3 N -0.59 -28.54 1.72 -682.21 -1.17 -29.71 16 4 C -0.25 -14.61 9.73 84.03 0.82 -13.79 16 5 H 0.06 3.46 8.06 -2.91 -0.02 3.43 16 6 C 0.00 0.11 5.26 84.86 0.45 0.55 16 7 N -0.94 -59.84 13.97 21.65 0.30 -59.54 16 8 Si 0.91 50.78 25.38 68.60 1.74 52.52 16 9 H -0.29 -16.05 6.63 99.48 0.66 -15.39 16 10 H -0.32 -17.71 7.11 99.48 0.71 -17.01 16 11 H -0.24 -13.76 5.42 99.48 0.54 -13.22 16 12 C 0.15 5.58 3.12 44.25 0.14 5.72 16 13 H 0.10 3.66 7.89 -2.38 -0.02 3.64 16 14 C -0.14 -4.17 8.16 71.98 0.59 -3.58 16 15 C 0.49 18.71 6.84 87.66 0.60 19.31 16 16 O -0.57 -27.43 13.02 -3.03 -0.04 -27.47 16 17 N -0.72 -20.24 5.42 -463.06 -2.51 -22.75 16 18 C 0.11 2.79 5.21 86.38 0.45 3.24 16 19 C 0.08 1.32 3.56 31.06 0.11 1.43 16 20 H 0.10 1.52 8.14 -2.39 -0.02 1.50 16 21 C -0.15 -1.86 6.56 31.91 0.21 -1.65 16 22 C -0.15 -1.41 7.16 32.10 0.23 -1.18 16 23 C 0.04 0.55 7.78 72.65 0.57 1.11 16 24 O -0.39 -7.81 10.99 -148.98 -1.64 -9.45 16 25 H 0.07 2.43 6.17 -2.38 -0.01 2.41 16 26 H 0.03 1.58 8.14 -2.39 -0.02 1.56 16 27 H 0.06 2.07 8.14 -2.39 -0.02 2.05 16 28 H 0.02 0.82 3.46 -2.39 -0.01 0.81 16 29 H 0.05 2.37 6.49 -2.39 -0.02 2.35 16 30 H 0.26 16.03 8.31 -92.71 -0.77 15.26 16 31 H 0.05 1.56 6.66 -2.39 -0.02 1.54 16 32 H 0.09 1.91 7.57 -2.39 -0.02 1.89 16 33 H 0.07 1.99 8.14 -2.39 -0.02 1.97 16 34 H 0.41 9.24 7.89 -92.71 -0.73 8.51 16 35 H 0.05 1.41 8.14 -2.39 -0.02 1.39 16 36 H 0.06 1.72 8.14 -2.39 -0.02 1.70 16 37 H 0.08 1.05 7.85 -2.39 -0.02 1.03 16 38 H 0.10 0.97 8.14 -2.38 -0.02 0.95 16 39 H 0.09 0.70 8.14 -2.39 -0.02 0.68 16 40 H 0.10 0.67 8.14 -2.39 -0.02 0.65 16 41 H 0.10 1.06 8.14 -2.39 -0.02 1.04 16 42 H 0.06 0.80 8.14 -2.38 -0.02 0.78 16 Total: -1.00 -76.17 327.05 1.97 -74.20 By element: Atomic # 1 Polarization: 9.49 SS G_CDS: 0.06 Total: 9.54 kcal Atomic # 6 Polarization: 7.43 SS G_CDS: 5.23 Total: 12.66 kcal Atomic # 7 Polarization: -108.62 SS G_CDS: -3.38 Total: -112.00 kcal Atomic # 8 Polarization: -35.24 SS G_CDS: -1.68 Total: -36.92 kcal Atomic # 14 Polarization: 50.78 SS G_CDS: 1.74 Total: 52.52 kcal Total: -76.17 1.97 -74.20 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331342937.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.190 kcal (2) G-P(sol) polarization free energy of solvation -76.165 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.355 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.969 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.196 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.386 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds