Wall clock time and date at job start Mon Mar 30 2020 00:59:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 N 1.46508 * 109.47237 * 2 1 4 4 C 1.36934 * 119.99734 * 267.31358 * 3 2 1 5 5 H 1.08008 * 119.99664 * 186.64930 * 4 3 2 6 6 C 1.38814 * 120.00612 * 6.64745 * 4 3 2 7 7 N 1.31616 * 119.99404 * 23.06816 * 6 4 3 8 8 Si 1.86795 * 120.00300 * 203.07288 * 6 4 3 9 9 H 1.48498 * 109.47151 * 359.97438 * 8 6 4 10 10 H 1.48498 * 109.47182 * 119.99693 * 8 6 4 11 11 H 1.48495 * 109.47308 * 240.00002 * 8 6 4 12 12 C 1.46495 * 119.99870 * 87.30793 * 3 2 1 13 13 H 1.08999 * 109.47041 * 184.18683 * 12 3 2 14 14 C 1.52994 * 109.47430 * 304.19186 * 12 3 2 15 15 C 1.50704 * 109.47141 * 64.19367 * 12 3 2 16 16 O 1.21284 * 119.99769 * 344.01300 * 15 12 3 17 17 N 1.34772 * 120.00011 * 164.01612 * 15 12 3 18 18 C 1.46510 * 119.99667 * 179.97438 * 17 15 12 19 19 C 1.53005 * 109.46761 * 179.97438 * 18 17 15 20 20 H 1.08997 * 109.86640 * 58.99440 * 19 18 17 21 21 C 1.54095 * 109.87608 * 180.02562 * 19 18 17 22 22 C 1.54810 * 104.18808 * 121.45136 * 21 19 18 23 23 C 1.55001 * 102.09161 * 20.88162 * 22 21 19 24 24 O 1.43743 * 109.87753 * 297.83241 * 19 18 17 25 25 H 1.08999 * 109.47423 * 52.14627 * 1 2 3 26 26 H 1.09002 * 109.47466 * 172.14842 * 1 2 3 27 27 H 1.09003 * 109.47442 * 292.14574 * 1 2 3 28 28 H 1.09004 * 109.47144 * 240.00381 * 2 1 3 29 29 H 1.09000 * 109.47609 * 119.99747 * 2 1 3 30 30 H 0.97007 * 119.99566 * 180.02562 * 7 6 4 31 31 H 1.08997 * 109.47315 * 299.99795 * 14 12 3 32 32 H 1.08999 * 109.47419 * 59.99729 * 14 12 3 33 33 H 1.09004 * 109.47326 * 179.97438 * 14 12 3 34 34 H 0.96995 * 120.00390 * 359.97438 * 17 15 12 35 35 H 1.08994 * 109.46957 * 299.99692 * 18 17 15 36 36 H 1.09001 * 109.47077 * 60.00136 * 18 17 15 37 37 H 1.08996 * 110.49116 * 240.13242 * 21 19 18 38 38 H 1.09001 * 110.48924 * 2.64657 * 21 19 18 39 39 H 1.09005 * 110.90534 * 139.07753 * 22 21 19 40 40 H 1.08994 * 110.91186 * 262.68336 * 22 21 19 41 41 H 1.08997 * 110.61688 * 81.47309 * 23 22 21 42 42 H 1.08992 * 110.62012 * 204.31470 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.2989 2.0082 -1.1846 5 1 2.7593 2.9853 -1.1827 6 6 1.9918 1.3881 -2.3880 7 7 1.0600 0.4595 -2.4307 8 14 2.9009 1.8714 -3.9465 9 1 3.8926 2.9313 -3.6327 10 1 3.6022 0.6847 -4.4988 11 1 1.9305 2.3830 -4.9473 12 6 2.2063 2.0917 1.2673 13 1 2.5008 3.1217 1.0662 14 6 0.8961 2.0808 2.0573 15 6 3.2831 1.4092 2.0709 16 8 3.6345 0.2848 1.7822 17 7 3.8556 2.0482 3.1103 18 6 4.9021 1.3844 3.8918 19 6 5.3794 2.3206 5.0038 20 1 4.5422 2.5866 5.6489 21 6 6.4814 1.6316 5.8317 22 6 7.7002 2.5775 5.7030 23 6 7.0309 3.9165 5.3010 24 8 5.9548 3.5067 4.4306 25 1 -0.3634 0.6306 -0.8114 26 1 -0.3634 -1.0180 -0.1404 27 1 -0.3634 0.3874 0.9519 28 1 1.8933 -0.5138 -0.8901 29 1 1.8933 -0.5138 0.8900 30 1 0.8456 0.0259 -3.2715 31 1 0.1173 2.5745 1.4762 32 1 0.6016 1.0508 2.2584 33 1 1.0362 2.6091 3.0005 34 1 3.5748 2.9475 3.3409 35 1 4.5024 0.4709 4.3320 36 1 5.7404 1.1373 3.2404 37 1 6.1760 1.5426 6.8742 38 1 6.7123 0.6501 5.4176 39 1 8.2205 2.6733 6.6560 40 1 8.3795 2.2328 4.9234 41 1 6.6401 4.4293 6.1799 42 1 7.7368 4.5538 4.7686 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000331342939.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:59:36 Heat of formation + Delta-G solvation = -52.107454 kcal Electronic energy + Delta-G solvation = -21711.168560 eV Core-core repulsion = 18499.467942 eV Total energy + Delta-G solvation = -3211.700618 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 270.173 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -39.85937 -38.87107 -35.86840 -34.20754 -32.41688 -32.10783 -30.38397 -29.45430 -28.45385 -25.59648 -24.08501 -22.67673 -21.99845 -21.29525 -20.70343 -19.13768 -16.97856 -16.64328 -16.54058 -15.81453 -15.58818 -15.12220 -14.65161 -14.30060 -13.88263 -13.68094 -13.31860 -13.06512 -12.52736 -12.42846 -12.04098 -11.97048 -11.77316 -11.61822 -11.54082 -11.40310 -11.27672 -10.97283 -10.84790 -10.67607 -10.58667 -10.22914 -9.88914 -9.84299 -9.49547 -9.37804 -8.76235 -8.54391 -8.21248 -6.76483 -5.65113 -2.96756 3.41804 3.47790 3.53236 3.54607 3.56264 3.82209 4.27763 4.51639 4.59122 4.63659 4.82502 4.98472 5.17574 5.32357 5.41193 5.43346 5.49184 5.49364 5.59990 5.67012 5.77475 5.80910 5.95563 6.05044 6.09457 6.30525 6.58948 6.66388 6.80692 6.91753 6.96540 7.16004 7.32642 7.39928 7.75648 8.00837 8.11762 8.28141 8.48819 9.02067 9.34822 9.96461 10.40727 11.36925 Molecular weight = 270.17amu Principal moments of inertia in cm(-1) A = 0.024924 B = 0.004452 C = 0.004069 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1123.167400 B = 6287.979812 C = 6880.434827 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.168 3.832 3 N -0.571 5.571 4 C -0.252 4.252 5 H 0.073 0.927 6 C 0.001 3.999 7 N -0.892 5.892 8 Si 0.896 3.104 9 H -0.280 1.280 10 H -0.290 1.290 11 H -0.293 1.293 12 C 0.161 3.839 13 H 0.082 0.918 14 C -0.154 4.154 15 C 0.493 3.507 16 O -0.531 6.531 17 N -0.738 5.738 18 C 0.123 3.877 19 C 0.066 3.934 20 H 0.074 0.926 21 C -0.150 4.150 22 C -0.155 4.155 23 C 0.046 3.954 24 O -0.367 6.367 25 H 0.083 0.917 26 H 0.018 0.982 27 H 0.012 0.988 28 H 0.083 0.917 29 H 0.024 0.976 30 H 0.250 0.750 31 H 0.065 0.935 32 H 0.059 0.941 33 H 0.042 0.958 34 H 0.397 0.603 35 H 0.072 0.928 36 H 0.067 0.933 37 H 0.078 0.922 38 H 0.083 0.917 39 H 0.079 0.921 40 H 0.078 0.922 41 H 0.059 0.941 42 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.191 5.190 18.281 20.694 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.043 3.957 3 N -0.291 5.291 4 C -0.381 4.381 5 H 0.091 0.909 6 C -0.197 4.197 7 N -0.537 5.537 8 Si 0.726 3.274 9 H -0.206 1.206 10 H -0.217 1.217 11 H -0.221 1.221 12 C 0.047 3.953 13 H 0.100 0.900 14 C -0.214 4.214 15 C 0.278 3.722 16 O -0.406 6.406 17 N -0.393 5.393 18 C -0.001 4.001 19 C 0.007 3.993 20 H 0.092 0.908 21 C -0.188 4.188 22 C -0.193 4.193 23 C -0.031 4.031 24 O -0.286 6.286 25 H 0.102 0.898 26 H 0.037 0.963 27 H 0.031 0.969 28 H 0.101 0.899 29 H 0.042 0.958 30 H 0.060 0.940 31 H 0.084 0.916 32 H 0.078 0.922 33 H 0.061 0.939 34 H 0.231 0.769 35 H 0.090 0.910 36 H 0.086 0.914 37 H 0.096 0.904 38 H 0.101 0.899 39 H 0.098 0.902 40 H 0.097 0.903 41 H 0.077 0.923 42 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 8.309 4.339 17.659 19.992 hybrid contribution 0.496 0.516 -0.467 0.855 sum 8.805 4.855 17.191 19.916 Atomic orbital electron populations 1.22448 0.99640 0.99123 0.99364 1.20839 0.91581 0.83863 0.99404 1.43940 1.74894 1.11189 0.99048 1.19330 1.33694 1.01687 0.83360 0.90919 1.24684 0.98314 0.99333 0.97336 1.70270 1.29120 1.29612 1.24744 0.86316 0.79835 0.77590 0.83677 1.20572 1.21689 1.22063 1.20163 0.91641 0.95823 0.87681 0.89974 1.22347 0.98499 1.02086 0.98429 1.22895 0.83296 0.86971 0.79029 1.90597 1.63150 1.19375 1.67432 1.46260 1.40261 1.19629 1.33156 1.21431 0.91722 0.94540 0.92444 1.23028 0.95955 0.86011 0.94270 0.90830 1.22931 0.94757 1.00364 1.00728 1.23137 0.98055 0.95589 1.02533 1.23536 0.89037 0.96319 0.94224 1.88955 1.49038 1.42594 1.48051 0.89811 0.96294 0.96918 0.89938 0.95802 0.93988 0.91554 0.92168 0.93925 0.76889 0.90961 0.91447 0.90377 0.89875 0.90250 0.90323 0.92264 0.88968 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.59 9.06 37.15 0.34 -3.25 16 2 C 0.17 4.43 4.63 -4.04 -0.02 4.41 16 3 N -0.57 -14.83 2.32 -166.98 -0.39 -15.22 16 4 C -0.25 -7.06 9.71 -15.06 -0.15 -7.21 16 5 H 0.07 1.98 7.78 -52.48 -0.41 1.57 16 6 C 0.00 0.01 4.98 -17.43 -0.09 -0.07 16 7 N -0.89 -25.83 8.35 55.49 0.46 -25.36 16 8 Si 0.90 22.36 29.61 -169.99 -5.03 17.33 16 9 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 10 H -0.29 -7.37 7.11 56.52 0.40 -6.97 16 11 H -0.29 -7.30 7.11 56.52 0.40 -6.90 16 12 C 0.16 3.38 3.12 -69.09 -0.22 3.16 16 13 H 0.08 1.64 7.79 -51.93 -0.40 1.23 16 14 C -0.15 -2.77 7.99 37.15 0.30 -2.47 16 15 C 0.49 10.08 7.02 -10.99 -0.08 10.01 16 16 O -0.53 -13.02 14.25 5.55 0.08 -12.94 16 17 N -0.74 -11.57 5.48 -60.29 -0.33 -11.90 16 18 C 0.12 1.68 5.15 -4.03 -0.02 1.66 16 19 C 0.07 0.68 3.49 -26.16 -0.09 0.59 16 20 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 21 C -0.15 -1.19 6.64 -25.21 -0.17 -1.36 16 22 C -0.16 -1.13 7.15 -24.72 -0.18 -1.31 16 23 C 0.05 0.38 7.72 38.21 0.29 0.67 16 24 O -0.37 -4.37 11.04 -35.23 -0.39 -4.76 16 25 H 0.08 2.28 6.48 -51.93 -0.34 1.94 16 26 H 0.02 0.43 8.14 -51.93 -0.42 0.00 16 27 H 0.01 0.27 5.43 -51.93 -0.28 -0.01 16 28 H 0.08 2.45 5.89 -51.93 -0.31 2.15 16 29 H 0.02 0.63 6.09 -51.93 -0.32 0.31 16 30 H 0.25 7.04 8.31 -40.82 -0.34 6.70 16 31 H 0.07 1.23 8.13 -51.93 -0.42 0.81 16 32 H 0.06 1.15 6.02 -51.93 -0.31 0.84 16 33 H 0.04 0.61 8.14 -51.93 -0.42 0.18 16 34 H 0.40 5.32 8.42 -40.82 -0.34 4.98 16 35 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 36 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 37 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 38 H 0.08 0.67 7.70 -51.93 -0.40 0.27 16 39 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 40 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 41 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 42 H 0.09 0.69 8.14 -51.93 -0.42 0.26 16 LS Contribution 328.48 15.07 4.95 4.95 Total: -1.00 -32.88 328.48 -7.61 -40.50 By element: Atomic # 1 Polarization: 9.45 SS G_CDS: -6.89 Total: 2.56 kcal Atomic # 6 Polarization: 4.91 SS G_CDS: -0.07 Total: 4.84 kcal Atomic # 7 Polarization: -52.22 SS G_CDS: -0.26 Total: -52.48 kcal Atomic # 8 Polarization: -17.39 SS G_CDS: -0.31 Total: -17.70 kcal Atomic # 14 Polarization: 22.36 SS G_CDS: -5.03 Total: 17.33 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -32.88 -7.61 -40.50 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331342939.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.609 kcal (2) G-P(sol) polarization free energy of solvation -32.884 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.492 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.615 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.499 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.107 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds