Wall clock time and date at job start Mon Mar 30 2020 00:59:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 N 1.46508 * 109.47237 * 2 1 4 4 C 1.36934 * 119.99734 * 267.31358 * 3 2 1 5 5 H 1.08008 * 119.99664 * 186.64930 * 4 3 2 6 6 C 1.38814 * 120.00612 * 6.64745 * 4 3 2 7 7 N 1.31616 * 119.99404 * 23.06816 * 6 4 3 8 8 Si 1.86795 * 120.00300 * 203.07288 * 6 4 3 9 9 H 1.48498 * 109.47151 * 359.97438 * 8 6 4 10 10 H 1.48498 * 109.47182 * 119.99693 * 8 6 4 11 11 H 1.48495 * 109.47308 * 240.00002 * 8 6 4 12 12 C 1.46495 * 119.99870 * 87.30793 * 3 2 1 13 13 H 1.08999 * 109.47041 * 184.18683 * 12 3 2 14 14 C 1.52994 * 109.47430 * 304.19186 * 12 3 2 15 15 C 1.50704 * 109.47141 * 64.19367 * 12 3 2 16 16 O 1.21284 * 119.99769 * 344.01300 * 15 12 3 17 17 N 1.34772 * 120.00011 * 164.01612 * 15 12 3 18 18 C 1.46510 * 119.99667 * 179.97438 * 17 15 12 19 19 C 1.53005 * 109.46761 * 179.97438 * 18 17 15 20 20 H 1.08997 * 109.86640 * 58.99440 * 19 18 17 21 21 C 1.54095 * 109.87608 * 180.02562 * 19 18 17 22 22 C 1.54810 * 104.18808 * 121.45136 * 21 19 18 23 23 C 1.55001 * 102.09161 * 20.88162 * 22 21 19 24 24 O 1.43743 * 109.87753 * 297.83241 * 19 18 17 25 25 H 1.08999 * 109.47423 * 52.14627 * 1 2 3 26 26 H 1.09002 * 109.47466 * 172.14842 * 1 2 3 27 27 H 1.09003 * 109.47442 * 292.14574 * 1 2 3 28 28 H 1.09004 * 109.47144 * 240.00381 * 2 1 3 29 29 H 1.09000 * 109.47609 * 119.99747 * 2 1 3 30 30 H 0.97007 * 119.99566 * 180.02562 * 7 6 4 31 31 H 1.08997 * 109.47315 * 299.99795 * 14 12 3 32 32 H 1.08999 * 109.47419 * 59.99729 * 14 12 3 33 33 H 1.09004 * 109.47326 * 179.97438 * 14 12 3 34 34 H 0.96995 * 120.00390 * 359.97438 * 17 15 12 35 35 H 1.08994 * 109.46957 * 299.99692 * 18 17 15 36 36 H 1.09001 * 109.47077 * 60.00136 * 18 17 15 37 37 H 1.08996 * 110.49116 * 240.13242 * 21 19 18 38 38 H 1.09001 * 110.48924 * 2.64657 * 21 19 18 39 39 H 1.09005 * 110.90534 * 139.07753 * 22 21 19 40 40 H 1.08994 * 110.91186 * 262.68336 * 22 21 19 41 41 H 1.08997 * 110.61688 * 81.47309 * 23 22 21 42 42 H 1.08992 * 110.62012 * 204.31470 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.2989 2.0082 -1.1846 5 1 2.7593 2.9853 -1.1827 6 6 1.9918 1.3881 -2.3880 7 7 1.0600 0.4595 -2.4307 8 14 2.9009 1.8714 -3.9465 9 1 3.8926 2.9313 -3.6327 10 1 3.6022 0.6847 -4.4988 11 1 1.9305 2.3830 -4.9473 12 6 2.2063 2.0917 1.2673 13 1 2.5008 3.1217 1.0662 14 6 0.8961 2.0808 2.0573 15 6 3.2831 1.4092 2.0709 16 8 3.6345 0.2848 1.7822 17 7 3.8556 2.0482 3.1103 18 6 4.9021 1.3844 3.8918 19 6 5.3794 2.3206 5.0038 20 1 4.5422 2.5866 5.6489 21 6 6.4814 1.6316 5.8317 22 6 7.7002 2.5775 5.7030 23 6 7.0309 3.9165 5.3010 24 8 5.9548 3.5067 4.4306 25 1 -0.3634 0.6306 -0.8114 26 1 -0.3634 -1.0180 -0.1404 27 1 -0.3634 0.3874 0.9519 28 1 1.8933 -0.5138 -0.8901 29 1 1.8933 -0.5138 0.8900 30 1 0.8456 0.0259 -3.2715 31 1 0.1173 2.5745 1.4762 32 1 0.6016 1.0508 2.2584 33 1 1.0362 2.6091 3.0005 34 1 3.5748 2.9475 3.3409 35 1 4.5024 0.4709 4.3320 36 1 5.7404 1.1373 3.2404 37 1 6.1760 1.5426 6.8742 38 1 6.7123 0.6501 5.4176 39 1 8.2205 2.6733 6.6560 40 1 8.3795 2.2328 4.9234 41 1 6.6401 4.4293 6.1799 42 1 7.7368 4.5538 4.7686 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000331342939.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:59:35 Heat of formation + Delta-G solvation = -74.979277 kcal Electronic energy + Delta-G solvation = -21712.160357 eV Core-core repulsion = 18499.467942 eV Total energy + Delta-G solvation = -3212.692415 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 270.173 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.97786 -40.16183 -37.72283 -35.62976 -34.03077 -33.09089 -31.96096 -30.93050 -30.24777 -26.66155 -25.98439 -24.13297 -23.06570 -22.48300 -22.13405 -20.69557 -18.85290 -17.88629 -17.61776 -17.16405 -16.77627 -16.50767 -16.08285 -15.80008 -15.49696 -14.99611 -14.75783 -14.50103 -13.95432 -13.76987 -13.61811 -13.33814 -13.20826 -13.13099 -12.71578 -12.64230 -12.61558 -12.50530 -12.35283 -12.21165 -12.05051 -11.83815 -11.58527 -11.47027 -11.27705 -10.65780 -10.61304 -10.29210 -9.97206 -8.79887 -7.78053 -5.10393 1.45414 1.50097 1.58264 1.85740 2.28441 2.56589 2.92500 3.33049 3.59779 3.64596 3.78969 3.98970 4.11960 4.15980 4.25037 4.36804 4.45817 4.48221 4.62940 4.69871 4.75640 4.84676 4.94153 4.95376 4.98896 5.06026 5.11453 5.17135 5.20636 5.24791 5.31833 5.46387 5.57643 5.61623 5.87976 5.98015 6.21406 6.36117 6.71035 7.21919 7.47372 7.93231 8.33565 9.22891 Molecular weight = 270.17amu Principal moments of inertia in cm(-1) A = 0.024924 B = 0.004452 C = 0.004069 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1123.167400 B = 6287.979812 C = 6880.434827 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C 0.179 3.821 3 N -0.589 5.589 4 C -0.263 4.263 5 H 0.076 0.924 6 C -0.050 4.050 7 N -0.914 5.914 8 Si 0.955 3.045 9 H -0.272 1.272 10 H -0.299 1.299 11 H -0.290 1.290 12 C 0.151 3.849 13 H 0.093 0.907 14 C -0.142 4.142 15 C 0.494 3.506 16 O -0.579 6.579 17 N -0.718 5.718 18 C 0.122 3.878 19 C 0.071 3.929 20 H 0.093 0.907 21 C -0.148 4.148 22 C -0.152 4.152 23 C 0.039 3.961 24 O -0.398 6.398 25 H 0.055 0.945 26 H 0.023 0.977 27 H 0.037 0.963 28 H 0.043 0.957 29 H 0.021 0.979 30 H 0.244 0.756 31 H 0.059 0.941 32 H 0.047 0.953 33 H 0.086 0.914 34 H 0.412 0.588 35 H 0.076 0.924 36 H 0.044 0.956 37 H 0.102 0.898 38 H 0.077 0.923 39 H 0.103 0.897 40 H 0.068 0.932 41 H 0.078 0.922 42 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.790 6.703 20.640 23.414 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.054 3.946 3 N -0.310 5.310 4 C -0.392 4.392 5 H 0.094 0.906 6 C -0.245 4.245 7 N -0.561 5.561 8 Si 0.785 3.215 9 H -0.197 1.197 10 H -0.226 1.226 11 H -0.217 1.217 12 C 0.039 3.961 13 H 0.111 0.889 14 C -0.201 4.201 15 C 0.280 3.720 16 O -0.457 6.457 17 N -0.372 5.372 18 C -0.003 4.003 19 C 0.013 3.987 20 H 0.110 0.890 21 C -0.186 4.186 22 C -0.190 4.190 23 C -0.037 4.037 24 O -0.318 6.318 25 H 0.074 0.926 26 H 0.042 0.958 27 H 0.055 0.945 28 H 0.061 0.939 29 H 0.039 0.961 30 H 0.054 0.946 31 H 0.079 0.921 32 H 0.066 0.934 33 H 0.105 0.895 34 H 0.248 0.752 35 H 0.094 0.906 36 H 0.062 0.938 37 H 0.120 0.880 38 H 0.096 0.904 39 H 0.122 0.878 40 H 0.086 0.914 41 H 0.096 0.904 42 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 8.927 5.919 20.085 22.762 hybrid contribution 0.381 0.101 -1.095 1.164 sum 9.308 6.020 18.990 21.988 Atomic orbital electron populations 1.22221 0.98239 0.98956 0.99489 1.20545 0.92573 0.84292 0.97165 1.44038 1.75554 1.11079 1.00304 1.19630 1.33223 1.01919 0.84471 0.90576 1.25369 0.99127 1.00067 0.99943 1.70416 1.30054 1.30711 1.24869 0.85381 0.78674 0.76946 0.80518 1.19707 1.22633 1.21733 1.20477 0.93371 0.95766 0.86450 0.88862 1.22188 0.96240 1.01868 0.99821 1.22565 0.83214 0.86355 0.79874 1.90583 1.64679 1.21393 1.69081 1.46000 1.39579 1.19901 1.31675 1.21580 0.90167 0.95739 0.92778 1.23035 0.97332 0.85327 0.92989 0.88971 1.22963 0.94183 0.99913 1.01539 1.23142 0.97689 0.94688 1.03457 1.23758 0.88458 0.97004 0.94484 1.88913 1.50222 1.43017 1.49641 0.92567 0.95781 0.94467 0.93895 0.96108 0.94588 0.92148 0.93405 0.89529 0.75194 0.90611 0.93782 0.87973 0.90422 0.87814 0.91358 0.90416 0.88589 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.40 9.06 71.98 0.65 -5.75 16 2 C 0.18 9.68 4.63 86.37 0.40 10.08 16 3 N -0.59 -30.82 2.32 -682.21 -1.59 -32.40 16 4 C -0.26 -14.86 9.71 84.03 0.82 -14.05 16 5 H 0.08 4.13 7.78 -2.91 -0.02 4.11 16 6 C -0.05 -2.88 4.98 84.86 0.42 -2.45 16 7 N -0.91 -54.27 8.35 21.65 0.18 -54.09 16 8 Si 0.96 46.76 29.61 68.60 2.03 48.79 16 9 H -0.27 -12.81 7.11 99.48 0.71 -12.11 16 10 H -0.30 -14.94 7.11 99.48 0.71 -14.24 16 11 H -0.29 -13.94 7.11 99.48 0.71 -13.24 16 12 C 0.15 6.21 3.12 44.25 0.14 6.35 16 13 H 0.09 3.58 7.79 -2.39 -0.02 3.56 16 14 C -0.14 -4.80 7.99 71.98 0.58 -4.22 16 15 C 0.49 19.90 7.02 87.66 0.62 20.51 16 16 O -0.58 -28.73 14.25 -3.04 -0.04 -28.77 16 17 N -0.72 -21.33 5.48 -463.03 -2.54 -23.87 16 18 C 0.12 3.17 5.15 86.38 0.44 3.62 16 19 C 0.07 1.30 3.49 30.97 0.11 1.41 16 20 H 0.09 1.37 8.14 -2.39 -0.02 1.35 16 21 C -0.15 -1.95 6.64 31.58 0.21 -1.74 16 22 C -0.15 -1.81 7.15 31.90 0.23 -1.59 16 23 C 0.04 0.55 7.72 72.67 0.56 1.11 16 24 O -0.40 -8.64 11.04 -148.98 -1.65 -10.29 16 25 H 0.06 3.09 6.48 -2.39 -0.02 3.08 16 26 H 0.02 1.10 8.14 -2.39 -0.02 1.08 16 27 H 0.04 1.60 5.43 -2.39 -0.01 1.59 16 28 H 0.04 2.65 5.89 -2.38 -0.01 2.63 16 29 H 0.02 1.12 6.09 -2.39 -0.01 1.11 16 30 H 0.24 14.18 8.31 -92.70 -0.77 13.41 16 31 H 0.06 2.12 8.13 -2.39 -0.02 2.10 16 32 H 0.05 1.73 6.02 -2.39 -0.01 1.72 16 33 H 0.09 2.14 8.14 -2.38 -0.02 2.12 16 34 H 0.41 9.95 8.42 -92.71 -0.78 9.17 16 35 H 0.08 1.95 8.14 -2.39 -0.02 1.93 16 36 H 0.04 1.37 8.14 -2.39 -0.02 1.35 16 37 H 0.10 0.89 8.14 -2.39 -0.02 0.87 16 38 H 0.08 1.12 7.70 -2.39 -0.02 1.10 16 39 H 0.10 0.74 8.14 -2.38 -0.02 0.72 16 40 H 0.07 0.95 8.14 -2.39 -0.02 0.93 16 41 H 0.08 0.81 8.14 -2.39 -0.02 0.79 16 42 H 0.10 1.24 8.14 -2.39 -0.02 1.22 16 Total: -1.00 -72.77 328.48 1.80 -70.97 By element: Atomic # 1 Polarization: 16.16 SS G_CDS: 0.22 Total: 16.38 kcal Atomic # 6 Polarization: 8.11 SS G_CDS: 5.17 Total: 13.28 kcal Atomic # 7 Polarization: -106.42 SS G_CDS: -3.94 Total: -110.36 kcal Atomic # 8 Polarization: -37.37 SS G_CDS: -1.69 Total: -39.06 kcal Atomic # 14 Polarization: 46.76 SS G_CDS: 2.03 Total: 48.79 kcal Total: -72.77 1.80 -70.97 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331342939.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.010 kcal (2) G-P(sol) polarization free energy of solvation -72.766 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.776 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.796 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.970 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.979 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds