Wall clock time and date at job start Mon Mar 30 2020 00:54:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52989 * 1 3 3 N 1.46497 * 109.47322 * 2 1 4 4 C 1.46504 * 119.99977 * 270.00049 * 3 2 1 5 5 C 1.50701 * 109.47145 * 269.99852 * 4 3 2 6 6 H 1.08001 * 119.99728 * 359.97438 * 5 4 3 7 7 C 1.37875 * 119.99906 * 179.97438 * 5 4 3 8 8 N 1.31508 * 119.99869 * 179.97438 * 7 5 4 9 9 Si 1.86801 * 119.99890 * 0.02562 * 7 5 4 10 10 H 1.48496 * 109.47374 * 90.00273 * 9 7 5 11 11 H 1.48505 * 109.46983 * 209.99828 * 9 7 5 12 12 H 1.48500 * 109.47395 * 329.99600 * 9 7 5 13 13 C 1.34773 * 120.00195 * 90.00041 * 3 2 1 14 14 O 1.21286 * 120.00225 * 180.02562 * 13 3 2 15 15 C 1.50697 * 120.00165 * 359.97438 * 13 3 2 16 16 N 1.46901 * 109.47783 * 180.02562 * 15 13 3 17 17 C 1.46904 * 110.99593 * 66.04712 * 16 15 13 18 18 C 1.46893 * 111.00314 * 190.00229 * 16 15 13 19 19 C 1.53779 * 113.61532 * 162.69854 * 18 16 15 20 20 C 1.53782 * 87.08390 * 220.01689 * 19 18 16 21 21 O 1.42896 * 113.61103 * 139.97840 * 20 19 18 22 22 C 1.53778 * 113.61537 * 65.20077 * 18 16 15 23 23 H 1.09008 * 109.47252 * 299.99855 * 1 2 3 24 24 H 1.08997 * 109.47798 * 60.00073 * 1 2 3 25 25 H 1.09003 * 109.47306 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.47236 * 239.99769 * 2 1 3 27 27 H 1.09004 * 109.47500 * 119.99783 * 2 1 3 28 28 H 1.09001 * 109.46820 * 30.00034 * 4 3 2 29 29 H 1.08998 * 109.46952 * 149.99858 * 4 3 2 30 30 H 0.97010 * 120.00276 * 180.02562 * 8 7 5 31 31 H 1.09008 * 109.47117 * 60.00372 * 15 13 3 32 32 H 1.08999 * 109.47351 * 300.00688 * 15 13 3 33 33 H 1.09000 * 109.46855 * 177.88924 * 17 16 15 34 34 H 1.08999 * 109.47291 * 297.89054 * 17 16 15 35 35 H 1.08997 * 109.47435 * 57.88757 * 17 16 15 36 36 H 1.09004 * 112.84826 * 294.00199 * 18 16 15 37 37 H 1.09002 * 113.61667 * 334.56708 * 19 18 16 38 38 H 1.09000 * 113.61711 * 105.46712 * 19 18 16 39 39 H 1.08995 * 113.69069 * 270.86953 * 20 19 18 40 40 H 0.96700 * 113.99941 * 82.50813 * 21 20 19 41 41 H 1.09002 * 113.61426 * 254.52575 * 22 18 16 42 42 H 1.09005 * 113.61427 * 25.43460 * 22 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2624 2.0718 -1.2688 5 6 3.6857 1.8350 -1.7038 6 1 4.3428 1.2308 -1.0958 7 6 4.1490 2.3896 -2.8780 8 7 5.3912 2.1833 -3.2574 9 14 3.0127 3.4351 -3.9292 10 1 3.1162 4.8553 -3.5083 11 1 3.4056 3.3119 -5.3560 12 1 1.6129 2.9691 -3.7593 13 6 2.2429 2.0165 1.1671 14 8 2.6468 3.1602 1.1671 15 6 1.9912 1.3064 2.4723 16 7 2.3090 2.2065 3.5889 17 6 1.3824 3.3458 3.6266 18 6 2.3048 1.4820 4.8667 19 6 3.0238 2.2305 6.0015 20 6 3.5918 0.8684 6.4340 21 8 4.9579 0.9238 6.8495 22 6 3.4095 0.4177 4.9750 23 1 -0.3634 0.5138 0.8901 24 1 -0.3634 0.5138 -0.8899 25 1 -0.3634 -1.0277 0.0005 26 1 1.8932 -0.5139 -0.8900 27 1 1.8933 -0.5138 0.8900 28 1 1.5816 1.6877 -2.0284 29 1 2.0955 3.1410 -1.1384 30 1 5.7173 2.5738 -4.0833 31 1 2.6211 0.4186 2.5303 32 1 0.9432 1.0126 2.5298 33 1 1.6165 3.9763 4.4844 34 1 1.4837 3.9271 2.7101 35 1 0.3595 2.9796 3.7133 36 1 1.3161 1.1148 5.1419 37 1 3.7836 2.9291 5.6512 38 1 2.3456 2.6724 6.7315 39 1 2.9563 0.3328 7.1391 40 1 5.0789 1.2067 7.7663 41 1 3.0426 -0.6040 4.8763 42 1 4.2748 0.6207 4.3439 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000332028354.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:54:26 Heat of formation + Delta-G solvation = -47.357080 kcal Electronic energy + Delta-G solvation = -21607.163674 eV Core-core repulsion = 18395.669048 eV Total energy + Delta-G solvation = -3211.494626 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 270.173 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -39.95261 -38.90403 -36.31420 -35.28013 -33.76815 -32.65144 -30.33730 -28.94033 -27.17330 -25.62689 -25.39260 -22.96294 -22.70135 -21.49791 -19.55181 -18.27968 -17.77420 -16.89304 -16.57115 -15.73456 -15.59847 -15.42788 -14.69166 -14.42332 -14.03623 -13.71013 -13.49481 -13.40557 -12.97739 -12.51124 -12.45083 -12.42505 -12.19823 -11.85434 -11.60382 -11.53822 -11.39766 -11.29619 -10.96985 -10.94399 -10.66748 -10.54920 -10.44016 -10.11297 -9.94701 -9.48499 -8.92528 -8.54784 -8.17378 -7.65260 -6.04223 -4.02550 3.31488 3.37232 3.39219 3.40346 3.58342 4.00293 4.28997 4.43120 4.48293 4.52979 4.68977 4.74979 5.01084 5.18410 5.24541 5.29411 5.34995 5.49631 5.55480 5.56481 5.63433 5.67041 5.69789 5.73922 5.92981 5.97245 6.02558 6.14812 6.17370 6.34696 6.39089 6.72245 6.95767 7.06001 7.21965 7.41760 7.50665 7.65955 8.31788 8.52209 8.99194 9.08019 9.56245 11.09336 Molecular weight = 270.17amu Principal moments of inertia in cm(-1) A = 0.022894 B = 0.004531 C = 0.004292 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1222.753189 B = 6177.695996 C = 6522.947931 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.106 3.894 3 N -0.595 5.595 4 C 0.218 3.782 5 C -0.527 4.527 6 H 0.074 0.926 7 C 0.072 3.928 8 N -0.898 5.898 9 Si 0.876 3.124 10 H -0.274 1.274 11 H -0.285 1.285 12 H -0.267 1.267 13 C 0.510 3.490 14 O -0.523 6.523 15 C 0.038 3.962 16 N -0.508 5.508 17 C 0.021 3.979 18 C 0.054 3.946 19 C -0.153 4.153 20 C 0.076 3.924 21 O -0.556 6.556 22 C -0.121 4.121 23 H 0.049 0.951 24 H 0.059 0.941 25 H 0.061 0.939 26 H 0.085 0.915 27 H 0.066 0.934 28 H 0.028 0.972 29 H 0.035 0.965 30 H 0.264 0.736 31 H 0.098 0.902 32 H 0.055 0.945 33 H 0.063 0.937 34 H 0.093 0.907 35 H 0.015 0.985 36 H 0.064 0.936 37 H 0.101 0.899 38 H 0.064 0.936 39 H 0.079 0.921 40 H 0.375 0.625 41 H 0.071 0.929 42 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.858 -5.204 17.902 21.575 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.018 4.018 3 N -0.328 5.328 4 C 0.098 3.902 5 C -0.565 4.565 6 H 0.093 0.907 7 C -0.130 4.130 8 N -0.537 5.537 9 Si 0.703 3.297 10 H -0.199 1.199 11 H -0.211 1.211 12 H -0.191 1.191 13 C 0.296 3.704 14 O -0.399 6.399 15 C -0.093 4.093 16 N -0.232 5.232 17 C -0.126 4.126 18 C -0.055 4.055 19 C -0.191 4.191 20 C 0.017 3.983 21 O -0.361 6.361 22 C -0.158 4.158 23 H 0.068 0.932 24 H 0.078 0.922 25 H 0.080 0.920 26 H 0.103 0.897 27 H 0.084 0.916 28 H 0.046 0.954 29 H 0.053 0.947 30 H 0.074 0.926 31 H 0.116 0.884 32 H 0.073 0.927 33 H 0.082 0.918 34 H 0.111 0.889 35 H 0.034 0.966 36 H 0.082 0.918 37 H 0.120 0.880 38 H 0.083 0.917 39 H 0.097 0.903 40 H 0.222 0.778 41 H 0.090 0.910 42 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -9.939 -4.554 17.037 20.243 hybrid contribution -1.447 0.288 0.005 1.476 sum -11.387 -4.266 17.042 20.935 Atomic orbital electron populations 1.22232 0.96920 1.01500 1.02096 1.21423 0.93247 0.84040 1.03072 1.47941 1.64525 1.13353 1.06987 1.19614 0.97254 0.93302 0.80075 1.21346 0.95362 1.32816 1.06993 0.90740 1.24854 0.94966 0.95819 0.97371 1.69901 1.15123 1.45079 1.23555 0.86858 0.81444 0.81653 0.79749 1.19942 1.21124 1.19145 1.20155 0.78479 0.87104 0.84705 1.90631 1.44499 1.17979 1.86764 1.22045 1.00214 0.96418 0.90623 1.61817 1.52028 1.08556 1.00818 1.22519 0.91934 0.93784 1.04407 1.22879 0.96684 0.95656 0.90261 1.23699 1.00470 0.97961 0.96966 1.23170 0.82944 0.96417 0.95790 1.86585 1.25259 1.90753 1.33482 1.23159 0.99521 0.97957 0.95211 0.93214 0.92207 0.92012 0.89691 0.91551 0.95399 0.94711 0.92617 0.88352 0.92707 0.91795 0.88876 0.96618 0.91788 0.88039 0.91684 0.90306 0.77829 0.91010 0.87868 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.12 10.24 37.15 0.38 -1.74 16 2 C 0.11 1.65 5.93 -4.05 -0.02 1.63 16 3 N -0.60 -12.28 2.46 -175.06 -0.43 -12.71 16 4 C 0.22 5.39 4.23 -5.19 -0.02 5.36 16 5 C -0.53 -15.36 9.94 -34.44 -0.34 -15.70 16 6 H 0.07 2.39 8.06 -52.49 -0.42 1.97 16 7 C 0.07 2.13 5.47 -17.82 -0.10 2.03 16 8 N -0.90 -28.13 13.96 55.43 0.77 -27.35 16 9 Si 0.88 21.86 27.47 -169.99 -4.67 17.19 16 10 H -0.27 -6.89 7.11 56.52 0.40 -6.49 16 11 H -0.29 -6.98 7.11 56.52 0.40 -6.57 16 12 H -0.27 -6.24 6.54 56.52 0.37 -5.87 16 13 C 0.51 10.51 7.41 -10.99 -0.08 10.43 16 14 O -0.52 -13.00 13.88 5.55 0.08 -12.92 16 15 C 0.04 0.58 3.92 -4.98 -0.02 0.56 16 16 N -0.51 -7.65 4.44 -235.35 -1.05 -8.70 16 17 C 0.02 0.31 9.15 60.07 0.55 0.85 16 18 C 0.05 0.62 3.17 -66.91 -0.21 0.41 16 19 C -0.15 -1.59 7.07 -25.92 -0.18 -1.78 16 20 C 0.08 0.74 5.21 -25.92 -0.14 0.60 16 21 O -0.56 -5.93 13.67 -35.23 -0.48 -6.41 16 22 C -0.12 -1.38 6.61 -25.92 -0.17 -1.55 16 23 H 0.05 0.59 7.22 -51.92 -0.37 0.22 16 24 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 25 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 26 H 0.08 1.39 8.07 -51.93 -0.42 0.97 16 27 H 0.07 0.87 6.44 -51.93 -0.33 0.54 16 28 H 0.03 0.66 7.13 -51.93 -0.37 0.29 16 29 H 0.03 0.92 6.85 -51.93 -0.36 0.56 16 30 H 0.26 7.72 8.31 -40.82 -0.34 7.38 16 31 H 0.10 1.40 6.46 -51.92 -0.34 1.07 16 32 H 0.06 0.71 7.15 -51.93 -0.37 0.34 16 33 H 0.06 0.81 7.62 -51.93 -0.40 0.42 16 34 H 0.09 1.63 5.92 -51.93 -0.31 1.33 16 35 H 0.02 0.19 8.12 -51.93 -0.42 -0.23 16 36 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 37 H 0.10 1.29 8.14 -51.93 -0.42 0.87 16 38 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 39 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 40 H 0.37 2.18 9.12 45.56 0.42 2.60 16 41 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 42 H 0.10 1.47 8.14 -51.93 -0.42 1.05 16 LS Contribution 336.58 15.07 5.07 5.07 Total: -1.00 -35.65 336.58 -7.30 -42.95 By element: Atomic # 1 Polarization: 8.01 SS G_CDS: -6.24 Total: 1.77 kcal Atomic # 6 Polarization: 1.48 SS G_CDS: -0.36 Total: 1.12 kcal Atomic # 7 Polarization: -48.06 SS G_CDS: -0.70 Total: -48.76 kcal Atomic # 8 Polarization: -18.93 SS G_CDS: -0.40 Total: -19.34 kcal Atomic # 14 Polarization: 21.86 SS G_CDS: -4.67 Total: 17.19 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -35.65 -7.30 -42.95 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000332028354.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.407 kcal (2) G-P(sol) polarization free energy of solvation -35.646 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.053 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.304 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.950 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.357 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds