Wall clock time and date at job start Mon Mar 30 2020 00:54:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52989 * 1 3 3 N 1.46497 * 109.47322 * 2 1 4 4 C 1.46504 * 119.99977 * 270.00049 * 3 2 1 5 5 C 1.50701 * 109.47145 * 269.99852 * 4 3 2 6 6 H 1.08001 * 119.99728 * 359.97438 * 5 4 3 7 7 C 1.37875 * 119.99906 * 179.97438 * 5 4 3 8 8 N 1.31508 * 119.99869 * 179.97438 * 7 5 4 9 9 Si 1.86801 * 119.99890 * 0.02562 * 7 5 4 10 10 H 1.48496 * 109.47374 * 90.00273 * 9 7 5 11 11 H 1.48505 * 109.46983 * 209.99828 * 9 7 5 12 12 H 1.48500 * 109.47395 * 329.99600 * 9 7 5 13 13 C 1.34773 * 120.00195 * 90.00041 * 3 2 1 14 14 O 1.21286 * 120.00225 * 180.02562 * 13 3 2 15 15 C 1.50697 * 120.00165 * 359.97438 * 13 3 2 16 16 N 1.46901 * 109.47783 * 180.02562 * 15 13 3 17 17 C 1.46904 * 110.99593 * 66.04712 * 16 15 13 18 18 C 1.46893 * 111.00314 * 190.00229 * 16 15 13 19 19 C 1.53779 * 113.61532 * 162.69854 * 18 16 15 20 20 C 1.53782 * 87.08390 * 220.01689 * 19 18 16 21 21 O 1.42896 * 113.61103 * 139.97840 * 20 19 18 22 22 C 1.53778 * 113.61537 * 65.20077 * 18 16 15 23 23 H 1.09008 * 109.47252 * 299.99855 * 1 2 3 24 24 H 1.08997 * 109.47798 * 60.00073 * 1 2 3 25 25 H 1.09003 * 109.47306 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.47236 * 239.99769 * 2 1 3 27 27 H 1.09004 * 109.47500 * 119.99783 * 2 1 3 28 28 H 1.09001 * 109.46820 * 30.00034 * 4 3 2 29 29 H 1.08998 * 109.46952 * 149.99858 * 4 3 2 30 30 H 0.97010 * 120.00276 * 180.02562 * 8 7 5 31 31 H 1.09008 * 109.47117 * 60.00372 * 15 13 3 32 32 H 1.08999 * 109.47351 * 300.00688 * 15 13 3 33 33 H 1.09000 * 109.46855 * 177.88924 * 17 16 15 34 34 H 1.08999 * 109.47291 * 297.89054 * 17 16 15 35 35 H 1.08997 * 109.47435 * 57.88757 * 17 16 15 36 36 H 1.09004 * 112.84826 * 294.00199 * 18 16 15 37 37 H 1.09002 * 113.61667 * 334.56708 * 19 18 16 38 38 H 1.09000 * 113.61711 * 105.46712 * 19 18 16 39 39 H 1.08995 * 113.69069 * 270.86953 * 20 19 18 40 40 H 0.96700 * 113.99941 * 82.50813 * 21 20 19 41 41 H 1.09002 * 113.61426 * 254.52575 * 22 18 16 42 42 H 1.09005 * 113.61427 * 25.43460 * 22 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2624 2.0718 -1.2688 5 6 3.6857 1.8350 -1.7038 6 1 4.3428 1.2308 -1.0958 7 6 4.1490 2.3896 -2.8780 8 7 5.3912 2.1833 -3.2574 9 14 3.0127 3.4351 -3.9292 10 1 3.1162 4.8553 -3.5083 11 1 3.4056 3.3119 -5.3560 12 1 1.6129 2.9691 -3.7593 13 6 2.2429 2.0165 1.1671 14 8 2.6468 3.1602 1.1671 15 6 1.9912 1.3064 2.4723 16 7 2.3090 2.2065 3.5889 17 6 1.3824 3.3458 3.6266 18 6 2.3048 1.4820 4.8667 19 6 3.0238 2.2305 6.0015 20 6 3.5918 0.8684 6.4340 21 8 4.9579 0.9238 6.8495 22 6 3.4095 0.4177 4.9750 23 1 -0.3634 0.5138 0.8901 24 1 -0.3634 0.5138 -0.8899 25 1 -0.3634 -1.0277 0.0005 26 1 1.8932 -0.5139 -0.8900 27 1 1.8933 -0.5138 0.8900 28 1 1.5816 1.6877 -2.0284 29 1 2.0955 3.1410 -1.1384 30 1 5.7173 2.5738 -4.0833 31 1 2.6211 0.4186 2.5303 32 1 0.9432 1.0126 2.5298 33 1 1.6165 3.9763 4.4844 34 1 1.4837 3.9271 2.7101 35 1 0.3595 2.9796 3.7133 36 1 1.3161 1.1148 5.1419 37 1 3.7836 2.9291 5.6512 38 1 2.3456 2.6724 6.7315 39 1 2.9563 0.3328 7.1391 40 1 5.0789 1.2067 7.7663 41 1 3.0426 -0.6040 4.8763 42 1 4.2748 0.6207 4.3439 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000332028354.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:54:26 Heat of formation + Delta-G solvation = -76.392920 kcal Electronic energy + Delta-G solvation = -21608.422763 eV Core-core repulsion = 18395.669048 eV Total energy + Delta-G solvation = -3212.753715 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 270.173 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.13610 -40.14681 -37.41288 -36.76573 -34.93794 -34.64067 -31.91332 -30.38336 -28.71402 -26.75229 -26.29430 -24.49040 -24.07642 -22.78350 -20.40652 -19.83256 -19.10135 -18.65135 -17.90628 -17.21836 -16.75155 -16.43351 -16.28164 -15.83052 -15.41665 -14.94057 -14.72879 -14.68042 -14.48043 -14.03286 -13.76682 -13.48774 -13.37193 -13.33951 -13.18572 -12.71913 -12.58239 -12.53492 -12.37907 -12.30415 -12.02650 -11.88123 -11.84772 -11.73393 -11.31996 -10.83538 -10.73884 -10.49148 -9.42139 -9.20075 -8.34088 -6.39048 1.31032 1.35840 1.44048 1.83375 2.21558 2.30524 2.95844 3.00418 3.40456 3.62582 3.72552 3.75062 3.89839 4.02674 4.09247 4.22816 4.34872 4.42575 4.47556 4.56972 4.60311 4.64397 4.79351 4.80609 4.87505 4.91028 4.99454 5.00878 5.01903 5.12296 5.20558 5.37715 5.37958 5.47242 5.67653 5.93778 6.23217 6.26305 6.62479 6.76082 6.98636 7.22171 7.49486 8.83271 Molecular weight = 270.17amu Principal moments of inertia in cm(-1) A = 0.022894 B = 0.004531 C = 0.004292 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1222.753189 B = 6177.695996 C = 6522.947931 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.098 3.902 3 N -0.603 5.603 4 C 0.228 3.772 5 C -0.535 4.535 6 H 0.025 0.975 7 C 0.010 3.990 8 N -0.947 5.947 9 Si 0.949 3.051 10 H -0.277 1.277 11 H -0.274 1.274 12 H -0.237 1.237 13 C 0.497 3.503 14 O -0.578 6.578 15 C 0.054 3.946 16 N -0.540 5.540 17 C 0.028 3.972 18 C 0.057 3.943 19 C -0.152 4.152 20 C 0.086 3.914 21 O -0.583 6.583 22 C -0.131 4.131 23 H 0.060 0.940 24 H 0.046 0.954 25 H 0.095 0.905 26 H 0.071 0.929 27 H 0.093 0.907 28 H 0.048 0.952 29 H 0.016 0.984 30 H 0.268 0.732 31 H 0.109 0.891 32 H 0.090 0.910 33 H 0.075 0.925 34 H 0.053 0.947 35 H 0.039 0.961 36 H 0.096 0.904 37 H 0.068 0.932 38 H 0.090 0.910 39 H 0.117 0.883 40 H 0.395 0.605 41 H 0.093 0.907 42 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.054 -6.427 19.491 24.874 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C -0.025 4.025 3 N -0.335 5.335 4 C 0.106 3.894 5 C -0.574 4.574 6 H 0.044 0.956 7 C -0.188 4.188 8 N -0.587 5.587 9 Si 0.772 3.228 10 H -0.203 1.203 11 H -0.199 1.199 12 H -0.161 1.161 13 C 0.285 3.715 14 O -0.457 6.457 15 C -0.077 4.077 16 N -0.265 5.265 17 C -0.120 4.120 18 C -0.051 4.051 19 C -0.190 4.190 20 C 0.027 3.973 21 O -0.391 6.391 22 C -0.169 4.169 23 H 0.079 0.921 24 H 0.065 0.935 25 H 0.114 0.886 26 H 0.090 0.910 27 H 0.112 0.888 28 H 0.066 0.934 29 H 0.034 0.966 30 H 0.077 0.923 31 H 0.127 0.873 32 H 0.108 0.892 33 H 0.094 0.906 34 H 0.072 0.928 35 H 0.058 0.942 36 H 0.113 0.887 37 H 0.087 0.913 38 H 0.108 0.892 39 H 0.134 0.866 40 H 0.245 0.755 41 H 0.111 0.889 42 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -13.162 -5.830 18.665 23.572 hybrid contribution -0.330 0.620 -0.408 0.812 sum -13.492 -5.209 18.258 23.292 Atomic orbital electron populations 1.22143 0.93840 1.03658 1.01996 1.21764 0.95687 0.81186 1.03825 1.48079 1.64484 1.15214 1.05741 1.19242 0.94621 0.92906 0.82658 1.21584 0.97169 1.32052 1.06594 0.95624 1.25872 0.96738 0.97192 0.98982 1.70060 1.17485 1.46660 1.24507 0.85694 0.80444 0.78905 0.77755 1.20307 1.19872 1.16051 1.21231 0.77106 0.86756 0.86363 1.90603 1.46841 1.20553 1.87716 1.21922 1.02353 0.95724 0.87679 1.61718 1.53083 1.09394 1.02322 1.22369 0.93152 0.93604 1.02837 1.23024 0.98078 0.95423 0.88542 1.23643 1.00092 0.98050 0.97235 1.23252 0.82968 0.95691 0.95384 1.86535 1.26188 1.90915 1.35479 1.23173 0.98281 0.99237 0.96178 0.92131 0.93497 0.88648 0.91038 0.88846 0.93418 0.96627 0.92293 0.87300 0.89206 0.90644 0.92837 0.94243 0.88663 0.91324 0.89175 0.86590 0.75509 0.88889 0.91840 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.42 10.24 71.98 0.74 -2.68 16 2 C 0.10 2.87 5.93 86.38 0.51 3.38 16 3 N -0.60 -24.93 2.46 -826.17 -2.03 -26.96 16 4 C 0.23 11.42 4.23 85.63 0.36 11.78 16 5 C -0.54 -32.53 9.94 25.60 0.25 -32.28 16 6 H 0.03 1.75 8.06 -2.91 -0.02 1.72 16 7 C 0.01 0.60 5.47 84.65 0.46 1.06 16 8 N -0.95 -61.49 13.96 21.45 0.30 -61.19 16 9 Si 0.95 45.58 27.47 68.60 1.88 47.47 16 10 H -0.28 -13.43 7.11 99.48 0.71 -12.72 16 11 H -0.27 -12.53 7.11 99.48 0.71 -11.82 16 12 H -0.24 -10.19 6.54 99.48 0.65 -9.54 16 13 C 0.50 20.75 7.41 87.66 0.65 21.40 16 14 O -0.58 -30.04 13.88 -3.05 -0.04 -30.08 16 15 C 0.05 1.56 3.92 85.56 0.34 1.90 16 16 N -0.54 -15.72 4.44 -898.52 -3.99 -19.71 16 17 C 0.03 0.78 9.15 127.69 1.17 1.95 16 18 C 0.06 1.16 3.17 45.44 0.14 1.30 16 19 C -0.15 -2.87 7.07 31.12 0.22 -2.65 16 20 C 0.09 1.43 5.21 31.12 0.16 1.59 16 21 O -0.58 -11.63 13.67 -148.98 -2.04 -13.67 16 22 C -0.13 -2.75 6.61 31.12 0.21 -2.54 16 23 H 0.06 1.19 7.22 -2.38 -0.02 1.17 16 24 H 0.05 1.14 8.14 -2.39 -0.02 1.12 16 25 H 0.09 1.46 8.14 -2.39 -0.02 1.44 16 26 H 0.07 2.28 8.07 -2.39 -0.02 2.27 16 27 H 0.09 2.22 6.44 -2.38 -0.02 2.20 16 28 H 0.05 2.19 7.13 -2.39 -0.02 2.17 16 29 H 0.02 0.84 6.85 -2.39 -0.02 0.83 16 30 H 0.27 16.14 8.31 -92.70 -0.77 15.37 16 31 H 0.11 2.92 6.46 -2.38 -0.02 2.90 16 32 H 0.09 1.98 7.15 -2.39 -0.02 1.96 16 33 H 0.07 1.84 7.62 -2.39 -0.02 1.83 16 34 H 0.05 1.93 5.92 -2.39 -0.01 1.91 16 35 H 0.04 0.88 8.12 -2.39 -0.02 0.86 16 36 H 0.10 1.41 8.14 -2.39 -0.02 1.39 16 37 H 0.07 1.76 8.14 -2.39 -0.02 1.74 16 38 H 0.09 1.23 8.14 -2.39 -0.02 1.21 16 39 H 0.12 1.13 8.14 -2.39 -0.02 1.11 16 40 H 0.39 3.88 9.12 -74.06 -0.68 3.21 16 41 H 0.09 1.51 8.14 -2.39 -0.02 1.49 16 42 H 0.06 1.85 8.14 -2.38 -0.02 1.83 16 Total: -1.00 -83.85 336.58 -0.43 -84.28 By element: Atomic # 1 Polarization: 15.38 SS G_CDS: 0.27 Total: 15.65 kcal Atomic # 6 Polarization: -1.00 SS G_CDS: 5.21 Total: 4.22 kcal Atomic # 7 Polarization: -102.14 SS G_CDS: -5.72 Total: -107.86 kcal Atomic # 8 Polarization: -41.67 SS G_CDS: -2.08 Total: -43.75 kcal Atomic # 14 Polarization: 45.58 SS G_CDS: 1.88 Total: 47.47 kcal Total: -83.85 -0.43 -84.28 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000332028354.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.885 kcal (2) G-P(sol) polarization free energy of solvation -83.847 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.962 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.431 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.278 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.393 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds