Wall clock time and date at job start Mon Mar 30 2020 00:54:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46496 * 109.47268 * 2 1 4 4 C 1.46495 * 120.00306 * 270.00218 * 3 2 1 5 5 C 1.50703 * 109.46731 * 269.99807 * 4 3 2 6 6 H 1.08001 * 120.00441 * 0.02562 * 5 4 3 7 7 C 1.37882 * 119.99780 * 179.97438 * 5 4 3 8 8 N 1.31513 * 120.00232 * 359.97438 * 7 5 4 9 9 Si 1.86803 * 119.99896 * 180.02562 * 7 5 4 10 10 H 1.48492 * 109.47265 * 59.99858 * 9 7 5 11 11 H 1.48498 * 109.47199 * 180.02562 * 9 7 5 12 12 H 1.48507 * 109.46862 * 299.99752 * 9 7 5 13 13 C 1.34780 * 119.99695 * 90.00068 * 3 2 1 14 14 O 1.21283 * 119.99749 * 180.02562 * 13 3 2 15 15 C 1.50695 * 120.00179 * 359.97438 * 13 3 2 16 16 N 1.46904 * 109.47518 * 179.97438 * 15 13 3 17 17 C 1.48560 * 111.00239 * 285.42518 * 16 15 13 18 18 C 1.54377 * 104.59403 * 200.95272 * 17 16 15 19 19 H 1.08991 * 110.32683 * 264.95862 * 18 17 16 20 20 O 1.42900 * 110.40669 * 142.78873 * 18 17 16 21 21 C 1.54259 * 105.06022 * 23.85525 * 18 17 16 22 22 C 1.48559 * 111.00066 * 169.99995 * 16 15 13 23 23 H 1.08999 * 110.40971 * 40.26912 * 22 16 15 24 24 C 1.52995 * 110.41187 * 277.82228 * 22 16 15 25 25 H 1.08992 * 109.47116 * 300.00020 * 1 2 3 26 26 H 1.09003 * 109.47084 * 59.99938 * 1 2 3 27 27 H 1.08999 * 109.47439 * 179.97438 * 1 2 3 28 28 H 1.08998 * 109.46703 * 239.99949 * 2 1 3 29 29 H 1.08998 * 109.46885 * 120.00484 * 2 1 3 30 30 H 1.08997 * 109.47255 * 29.99793 * 4 3 2 31 31 H 1.09001 * 109.47623 * 150.00197 * 4 3 2 32 32 H 0.96999 * 120.00246 * 179.97438 * 8 7 5 33 33 H 1.09003 * 109.47304 * 60.00260 * 15 13 3 34 34 H 1.09001 * 109.47846 * 300.00159 * 15 13 3 35 35 H 1.09004 * 110.40940 * 82.17346 * 17 16 15 36 36 H 1.08996 * 110.50752 * 319.78735 * 17 16 15 37 37 H 0.96698 * 114.00072 * 64.31749 * 20 18 17 38 38 H 1.09000 * 110.32330 * 241.10231 * 21 18 17 39 39 H 1.08999 * 110.32830 * 118.89440 * 21 18 17 40 40 H 1.09003 * 109.47639 * 303.37062 * 24 22 16 41 41 H 1.08993 * 109.47336 * 63.37518 * 24 22 16 42 42 H 1.09007 * 109.47076 * 183.37467 * 24 22 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2625 2.0718 -1.2686 5 6 3.6859 1.8350 -1.7036 6 1 4.3427 1.2301 -1.0961 7 6 4.1492 2.3897 -2.8778 8 7 3.3490 3.1250 -3.6185 9 14 5.9133 2.0955 -3.4174 10 1 6.1404 0.6388 -3.5946 11 1 6.1609 2.7957 -4.7033 12 1 6.8411 2.6189 -2.3827 13 6 2.2430 2.0165 1.1673 14 8 2.6469 3.1601 1.1673 15 6 1.9913 1.3062 2.4723 16 7 2.3102 2.2059 3.5890 17 6 3.7796 2.3496 3.7540 18 6 3.9622 2.8342 5.2083 19 1 4.0368 3.9212 5.2387 20 8 5.1255 2.2412 5.7888 21 6 2.6941 2.3633 5.9499 22 6 1.8519 1.6339 4.8812 23 1 2.0449 0.5615 4.9119 24 6 0.3629 1.9156 5.0913 25 1 -0.3633 0.5138 0.8899 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3634 -1.0276 -0.0005 28 1 1.8933 -0.5138 -0.8900 29 1 1.8933 -0.5139 0.8899 30 1 1.5818 1.6878 -2.0283 31 1 2.0957 3.1411 -1.1383 32 1 3.6751 3.5155 -4.4443 33 1 2.6212 0.4185 2.5303 34 1 0.9432 1.0124 2.5300 35 1 4.1701 3.0893 3.0550 36 1 4.2759 1.3903 3.6077 37 1 5.9538 2.5013 5.3629 38 1 2.1463 3.2192 6.3442 39 1 2.9589 1.6786 6.7555 40 1 0.1857 2.9899 5.0407 41 1 -0.2148 1.4151 4.3143 42 1 0.0569 1.5426 6.0688 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000340921267.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:54:03 Heat of formation + Delta-G solvation = -79.634066 kcal Electronic energy + Delta-G solvation = -21813.140809 eV Core-core repulsion = 18600.246547 eV Total energy + Delta-G solvation = -3212.894261 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 270.173 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -39.81820 -38.47303 -36.04545 -35.16998 -32.84938 -31.86952 -30.43044 -30.05266 -27.72904 -26.02320 -25.05601 -23.01171 -22.41375 -21.06795 -20.20148 -18.29474 -17.64954 -16.55263 -16.27904 -15.89388 -15.13821 -15.12086 -14.64984 -14.37306 -13.96854 -13.68598 -13.54450 -13.30315 -12.82652 -12.66044 -12.42767 -12.24861 -12.00432 -11.79886 -11.68659 -11.37897 -11.27347 -11.20542 -10.98516 -10.90945 -10.69415 -10.63683 -10.50490 -10.11105 -9.99872 -9.63306 -8.91876 -8.42368 -8.29415 -7.61458 -6.03131 -4.07940 3.31335 3.35963 3.37740 3.49753 3.61843 4.06807 4.36153 4.45241 4.50736 4.71415 4.93439 5.15127 5.18656 5.27460 5.31441 5.34280 5.39031 5.40250 5.51947 5.63067 5.65986 5.71536 5.80312 5.83437 5.90139 5.98108 6.04211 6.15035 6.21630 6.24318 6.48855 6.86655 6.91354 7.16128 7.48086 7.55483 7.59349 7.93760 8.25542 8.47992 8.92199 9.17829 9.57173 11.04799 Molecular weight = 270.17amu Principal moments of inertia in cm(-1) A = 0.019090 B = 0.005274 C = 0.004433 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1466.357135 B = 5307.874703 C = 6314.991897 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.107 3.893 3 N -0.601 5.601 4 C 0.248 3.752 5 C -0.526 4.526 6 H 0.055 0.945 7 C 0.061 3.939 8 N -0.895 5.895 9 Si 0.897 3.103 10 H -0.277 1.277 11 H -0.286 1.286 12 H -0.277 1.277 13 C 0.508 3.492 14 O -0.524 6.524 15 C 0.026 3.974 16 N -0.481 5.481 17 C 0.004 3.996 18 C 0.098 3.902 19 H 0.069 0.931 20 O -0.569 6.569 21 C -0.112 4.112 22 C 0.056 3.944 23 H 0.052 0.948 24 C -0.137 4.137 25 H 0.050 0.950 26 H 0.061 0.939 27 H 0.059 0.941 28 H 0.082 0.918 29 H 0.061 0.939 30 H 0.031 0.969 31 H 0.043 0.957 32 H 0.264 0.736 33 H 0.058 0.942 34 H 0.097 0.903 35 H 0.098 0.902 36 H 0.049 0.951 37 H 0.380 0.620 38 H 0.081 0.919 39 H 0.079 0.921 40 H 0.066 0.934 41 H 0.055 0.945 42 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.034 -6.125 16.170 17.756 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.018 4.018 3 N -0.334 5.334 4 C 0.129 3.871 5 C -0.565 4.565 6 H 0.073 0.927 7 C -0.141 4.141 8 N -0.534 5.534 9 Si 0.725 3.275 10 H -0.203 1.203 11 H -0.212 1.212 12 H -0.203 1.203 13 C 0.293 3.707 14 O -0.400 6.400 15 C -0.106 4.106 16 N -0.206 5.206 17 C -0.124 4.124 18 C 0.038 3.962 19 H 0.087 0.913 20 O -0.375 6.375 21 C -0.149 4.149 22 C -0.053 4.053 23 H 0.070 0.930 24 C -0.194 4.194 25 H 0.069 0.931 26 H 0.080 0.920 27 H 0.078 0.922 28 H 0.100 0.900 29 H 0.079 0.921 30 H 0.049 0.951 31 H 0.061 0.939 32 H 0.073 0.927 33 H 0.076 0.924 34 H 0.115 0.885 35 H 0.117 0.883 36 H 0.067 0.933 37 H 0.227 0.773 38 H 0.100 0.900 39 H 0.098 0.902 40 H 0.085 0.915 41 H 0.074 0.926 42 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -4.536 -5.155 16.236 17.628 hybrid contribution 1.728 -0.857 -0.814 2.094 sum -2.808 -6.013 15.422 16.789 Atomic orbital electron populations 1.22224 0.96824 1.01326 1.02362 1.21393 0.93509 0.84397 1.02468 1.48256 1.64273 1.13157 1.07698 1.19230 0.96097 0.93654 0.78115 1.21396 0.96987 1.31870 1.06219 0.92691 1.24929 0.97768 0.94960 0.96396 1.69921 1.35674 1.33431 1.14336 0.86577 0.84889 0.78209 0.77831 1.20299 1.21157 1.20255 1.20069 0.78918 0.87072 0.84599 1.90651 1.44789 1.17650 1.86869 1.22285 1.02453 0.94405 0.91437 1.65108 1.11190 1.43160 1.01170 1.23907 0.89320 1.01679 0.97516 1.22561 0.85600 0.96626 0.91371 0.91269 1.86488 1.16793 1.73408 1.60771 1.22360 0.93946 1.01013 0.97623 1.22693 0.95984 0.97001 0.89592 0.92978 1.21724 0.93877 1.02858 1.00956 0.93102 0.91976 0.92243 0.89999 0.92083 0.95119 0.93912 0.92682 0.92382 0.88504 0.88324 0.93261 0.77276 0.89988 0.90219 0.91487 0.92628 0.92299 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.27 10.24 37.16 0.38 -1.89 16 2 C 0.11 1.72 5.93 -4.04 -0.02 1.69 16 3 N -0.60 -12.75 2.46 -175.07 -0.43 -13.18 16 4 C 0.25 6.53 5.16 -5.19 -0.03 6.50 16 5 C -0.53 -14.95 9.39 -34.44 -0.32 -15.27 16 6 H 0.05 1.56 7.81 -52.49 -0.41 1.15 16 7 C 0.06 1.76 5.46 -17.82 -0.10 1.67 16 8 N -0.89 -26.70 13.29 55.43 0.74 -25.96 16 9 Si 0.90 21.89 29.54 -169.99 -5.02 16.87 16 10 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 11 H -0.29 -6.87 7.11 56.52 0.40 -6.46 16 12 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 13 C 0.51 10.69 7.52 -10.99 -0.08 10.61 16 14 O -0.52 -13.32 14.81 5.55 0.08 -13.24 16 15 C 0.03 0.40 3.82 -4.98 -0.02 0.38 16 16 N -0.48 -7.34 4.66 -223.57 -1.04 -8.38 16 17 C 0.00 0.06 5.66 -2.18 -0.01 0.05 16 18 C 0.10 1.21 4.42 -25.35 -0.11 1.10 16 19 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 20 O -0.57 -6.69 13.27 -35.23 -0.47 -7.16 16 21 C -0.11 -1.24 6.36 -25.35 -0.16 -1.41 16 22 C 0.06 0.66 2.87 -66.07 -0.19 0.47 16 23 H 0.05 0.60 8.00 -51.93 -0.42 0.18 16 24 C -0.14 -1.39 9.31 37.15 0.35 -1.04 16 25 H 0.05 0.65 7.22 -51.93 -0.37 0.27 16 26 H 0.06 0.93 8.14 -51.93 -0.42 0.50 16 27 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 28 H 0.08 1.37 8.07 -51.93 -0.42 0.95 16 29 H 0.06 0.82 6.44 -51.93 -0.33 0.49 16 30 H 0.03 0.82 8.07 -51.93 -0.42 0.40 16 31 H 0.04 1.28 7.42 -51.93 -0.39 0.89 16 32 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 33 H 0.06 0.84 7.03 -51.93 -0.36 0.48 16 34 H 0.10 1.31 6.25 -51.93 -0.32 0.99 16 35 H 0.10 1.74 7.24 -51.93 -0.38 1.37 16 36 H 0.05 0.74 7.70 -51.93 -0.40 0.34 16 37 H 0.38 3.11 9.12 45.56 0.42 3.52 16 38 H 0.08 0.83 7.86 -51.93 -0.41 0.42 16 39 H 0.08 0.85 7.98 -51.93 -0.41 0.43 16 40 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 41 H 0.05 0.56 7.35 -51.93 -0.38 0.18 16 42 H 0.06 0.48 8.14 -51.92 -0.42 0.06 16 LS Contribution 338.05 15.07 5.09 5.09 Total: -1.00 -33.83 338.05 -7.63 -41.46 By element: Atomic # 1 Polarization: 7.90 SS G_CDS: -6.26 Total: 1.64 kcal Atomic # 6 Polarization: 3.18 SS G_CDS: -0.32 Total: 2.86 kcal Atomic # 7 Polarization: -46.79 SS G_CDS: -0.73 Total: -47.53 kcal Atomic # 8 Polarization: -20.01 SS G_CDS: -0.39 Total: -20.40 kcal Atomic # 14 Polarization: 21.89 SS G_CDS: -5.02 Total: 16.87 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -33.83 -7.63 -41.46 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000340921267.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.179 kcal (2) G-P(sol) polarization free energy of solvation -33.826 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.005 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.629 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.455 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.634 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds