Wall clock time and date at job start Mon Mar 30 2020 00:54:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46496 * 109.47268 * 2 1 4 4 C 1.46495 * 120.00306 * 270.00218 * 3 2 1 5 5 C 1.50703 * 109.46731 * 269.99807 * 4 3 2 6 6 H 1.08001 * 120.00441 * 0.02562 * 5 4 3 7 7 C 1.37882 * 119.99780 * 179.97438 * 5 4 3 8 8 N 1.31513 * 120.00232 * 359.97438 * 7 5 4 9 9 Si 1.86803 * 119.99896 * 180.02562 * 7 5 4 10 10 H 1.48492 * 109.47265 * 59.99858 * 9 7 5 11 11 H 1.48498 * 109.47199 * 180.02562 * 9 7 5 12 12 H 1.48507 * 109.46862 * 299.99752 * 9 7 5 13 13 C 1.34780 * 119.99695 * 90.00068 * 3 2 1 14 14 O 1.21283 * 119.99749 * 180.02562 * 13 3 2 15 15 C 1.50695 * 120.00179 * 359.97438 * 13 3 2 16 16 N 1.46904 * 109.47518 * 179.97438 * 15 13 3 17 17 C 1.48560 * 111.00239 * 285.42518 * 16 15 13 18 18 C 1.54377 * 104.59403 * 200.95272 * 17 16 15 19 19 H 1.08991 * 110.32683 * 264.95862 * 18 17 16 20 20 O 1.42900 * 110.40669 * 142.78873 * 18 17 16 21 21 C 1.54259 * 105.06022 * 23.85525 * 18 17 16 22 22 C 1.48559 * 111.00066 * 169.99995 * 16 15 13 23 23 H 1.08999 * 110.40971 * 40.26912 * 22 16 15 24 24 C 1.52995 * 110.41187 * 277.82228 * 22 16 15 25 25 H 1.08992 * 109.47116 * 300.00020 * 1 2 3 26 26 H 1.09003 * 109.47084 * 59.99938 * 1 2 3 27 27 H 1.08999 * 109.47439 * 179.97438 * 1 2 3 28 28 H 1.08998 * 109.46703 * 239.99949 * 2 1 3 29 29 H 1.08998 * 109.46885 * 120.00484 * 2 1 3 30 30 H 1.08997 * 109.47255 * 29.99793 * 4 3 2 31 31 H 1.09001 * 109.47623 * 150.00197 * 4 3 2 32 32 H 0.96999 * 120.00246 * 179.97438 * 8 7 5 33 33 H 1.09003 * 109.47304 * 60.00260 * 15 13 3 34 34 H 1.09001 * 109.47846 * 300.00159 * 15 13 3 35 35 H 1.09004 * 110.40940 * 82.17346 * 17 16 15 36 36 H 1.08996 * 110.50752 * 319.78735 * 17 16 15 37 37 H 0.96698 * 114.00072 * 64.31749 * 20 18 17 38 38 H 1.09000 * 110.32330 * 241.10231 * 21 18 17 39 39 H 1.08999 * 110.32830 * 118.89440 * 21 18 17 40 40 H 1.09003 * 109.47639 * 303.37062 * 24 22 16 41 41 H 1.08993 * 109.47336 * 63.37518 * 24 22 16 42 42 H 1.09007 * 109.47076 * 183.37467 * 24 22 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2625 2.0718 -1.2686 5 6 3.6859 1.8350 -1.7036 6 1 4.3427 1.2301 -1.0961 7 6 4.1492 2.3897 -2.8778 8 7 3.3490 3.1250 -3.6185 9 14 5.9133 2.0955 -3.4174 10 1 6.1404 0.6388 -3.5946 11 1 6.1609 2.7957 -4.7033 12 1 6.8411 2.6189 -2.3827 13 6 2.2430 2.0165 1.1673 14 8 2.6469 3.1601 1.1673 15 6 1.9913 1.3062 2.4723 16 7 2.3102 2.2059 3.5890 17 6 3.7796 2.3496 3.7540 18 6 3.9622 2.8342 5.2083 19 1 4.0368 3.9212 5.2387 20 8 5.1255 2.2412 5.7888 21 6 2.6941 2.3633 5.9499 22 6 1.8519 1.6339 4.8812 23 1 2.0449 0.5615 4.9119 24 6 0.3629 1.9156 5.0913 25 1 -0.3633 0.5138 0.8899 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3634 -1.0276 -0.0005 28 1 1.8933 -0.5138 -0.8900 29 1 1.8933 -0.5139 0.8899 30 1 1.5818 1.6878 -2.0283 31 1 2.0957 3.1411 -1.1383 32 1 3.6751 3.5155 -4.4443 33 1 2.6212 0.4185 2.5303 34 1 0.9432 1.0124 2.5300 35 1 4.1701 3.0893 3.0550 36 1 4.2759 1.3903 3.6077 37 1 5.9538 2.5013 5.3629 38 1 2.1463 3.2192 6.3442 39 1 2.9589 1.6786 6.7555 40 1 0.1857 2.9899 5.0407 41 1 -0.2148 1.4151 4.3143 42 1 0.0569 1.5426 6.0688 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000340921267.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:54:02 Heat of formation + Delta-G solvation = -106.034806 kcal Electronic energy + Delta-G solvation = -21814.285630 eV Core-core repulsion = 18600.246547 eV Total energy + Delta-G solvation = -3214.039083 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 270.173 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.12417 -39.84930 -37.10943 -36.78450 -34.93306 -33.01186 -31.63502 -31.36244 -29.43818 -27.43551 -26.21496 -24.70884 -23.93199 -22.17779 -21.15519 -19.87015 -18.67554 -18.57888 -17.88080 -17.31682 -16.65819 -16.43485 -16.11251 -15.70845 -15.18461 -14.88772 -14.82775 -14.61499 -14.22935 -13.97322 -13.84926 -13.56988 -13.27420 -13.14956 -13.11022 -12.82739 -12.68068 -12.51198 -12.43481 -12.20266 -12.12792 -12.01285 -11.84087 -11.73131 -11.59369 -10.97699 -10.65146 -10.55943 -9.48600 -9.41193 -8.22763 -6.38055 1.34855 1.39069 1.46535 1.87085 2.20653 2.39764 2.88791 3.06290 3.38731 3.54247 3.61083 3.89299 4.01788 4.07156 4.17847 4.23259 4.31538 4.43813 4.46760 4.47018 4.63526 4.75080 4.83895 4.91856 4.93218 4.98833 5.00647 5.01693 5.05525 5.18773 5.21888 5.38244 5.40398 5.57324 5.76329 5.85952 5.96811 6.06553 6.69893 6.76453 6.83305 7.28315 7.54307 8.84002 Molecular weight = 270.17amu Principal moments of inertia in cm(-1) A = 0.019090 B = 0.005274 C = 0.004433 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1466.357135 B = 5307.874703 C = 6314.991897 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.100 3.900 3 N -0.606 5.606 4 C 0.265 3.735 5 C -0.543 4.543 6 H 0.051 0.949 7 C 0.008 3.992 8 N -0.929 5.929 9 Si 0.967 3.033 10 H -0.260 1.260 11 H -0.278 1.278 12 H -0.278 1.278 13 C 0.498 3.502 14 O -0.580 6.580 15 C 0.042 3.958 16 N -0.505 5.505 17 C 0.006 3.994 18 C 0.103 3.897 19 H 0.068 0.932 20 O -0.574 6.574 21 C -0.108 4.108 22 C 0.057 3.943 23 H 0.065 0.935 24 C -0.134 4.134 25 H 0.060 0.940 26 H 0.038 0.962 27 H 0.096 0.904 28 H 0.071 0.929 29 H 0.096 0.904 30 H 0.021 0.979 31 H -0.006 1.006 32 H 0.267 0.733 33 H 0.078 0.922 34 H 0.126 0.874 35 H 0.059 0.941 36 H 0.048 0.952 37 H 0.393 0.607 38 H 0.092 0.908 39 H 0.091 0.909 40 H 0.054 0.946 41 H 0.057 0.943 42 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.086 -8.406 18.030 20.309 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.023 4.023 3 N -0.339 5.339 4 C 0.143 3.857 5 C -0.581 4.581 6 H 0.070 0.930 7 C -0.191 4.191 8 N -0.568 5.568 9 Si 0.791 3.209 10 H -0.184 1.184 11 H -0.203 1.203 12 H -0.204 1.204 13 C 0.286 3.714 14 O -0.460 6.460 15 C -0.089 4.089 16 N -0.230 5.230 17 C -0.122 4.122 18 C 0.044 3.956 19 H 0.086 0.914 20 O -0.382 6.382 21 C -0.146 4.146 22 C -0.050 4.050 23 H 0.083 0.917 24 C -0.191 4.191 25 H 0.079 0.921 26 H 0.057 0.943 27 H 0.115 0.885 28 H 0.090 0.910 29 H 0.115 0.885 30 H 0.039 0.961 31 H 0.012 0.988 32 H 0.076 0.924 33 H 0.096 0.904 34 H 0.143 0.857 35 H 0.078 0.922 36 H 0.067 0.933 37 H 0.243 0.757 38 H 0.110 0.890 39 H 0.109 0.891 40 H 0.073 0.927 41 H 0.076 0.924 42 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -4.606 -7.488 18.116 20.136 hybrid contribution 1.726 -0.130 -1.387 2.218 sum -2.880 -7.618 16.729 18.606 Atomic orbital electron populations 1.22152 0.94465 1.03526 1.01702 1.21731 0.95425 0.81413 1.03701 1.48294 1.64340 1.15068 1.06179 1.18654 0.95207 0.91408 0.80426 1.21665 0.97881 1.32044 1.06532 0.93049 1.25863 1.02401 0.94453 0.96393 1.70048 1.37818 1.34174 1.14776 0.85477 0.78980 0.79025 0.77373 1.18440 1.20272 1.20375 1.21125 0.77447 0.86681 0.86173 1.90621 1.47190 1.20342 1.87817 1.22163 1.04441 0.93997 0.88324 1.65044 1.11208 1.44157 1.02615 1.23791 0.89501 1.00514 0.98438 1.22481 0.86651 0.96590 0.89910 0.91383 1.86457 1.17387 1.73498 1.60850 1.22393 0.93040 1.01636 0.97489 1.22816 0.97025 0.97567 0.87608 0.91729 1.21732 0.92597 1.02256 1.02534 0.92113 0.94319 0.88515 0.91033 0.88545 0.96146 0.98790 0.92402 0.90405 0.85672 0.92235 0.93347 0.75696 0.88953 0.89078 0.92686 0.92387 0.89731 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.95 10.24 71.98 0.74 -3.22 16 2 C 0.10 3.06 5.93 86.38 0.51 3.57 16 3 N -0.61 -26.21 2.46 -826.17 -2.03 -28.23 16 4 C 0.26 14.62 5.16 85.63 0.44 15.06 16 5 C -0.54 -31.81 9.39 25.60 0.24 -31.57 16 6 H 0.05 2.97 7.81 -2.91 -0.02 2.95 16 7 C 0.01 0.46 5.46 84.66 0.46 0.92 16 8 N -0.93 -57.01 13.29 21.45 0.28 -56.73 16 9 Si 0.97 45.33 29.54 68.60 2.03 47.36 16 10 H -0.26 -11.39 7.11 99.48 0.71 -10.69 16 11 H -0.28 -12.56 7.11 99.48 0.71 -11.85 16 12 H -0.28 -13.02 7.11 99.48 0.71 -12.31 16 13 C 0.50 21.30 7.52 87.66 0.66 21.96 16 14 O -0.58 -31.06 14.81 -3.04 -0.05 -31.10 16 15 C 0.04 1.24 3.82 85.55 0.33 1.56 16 16 N -0.50 -14.82 4.66 -861.23 -4.01 -18.83 16 17 C 0.01 0.19 5.66 86.45 0.49 0.68 16 18 C 0.10 2.44 4.42 31.49 0.14 2.58 16 19 H 0.07 1.61 8.14 -2.39 -0.02 1.59 16 20 O -0.57 -12.57 13.27 -148.98 -1.98 -14.55 16 21 C -0.11 -2.13 6.36 31.49 0.20 -1.93 16 22 C 0.06 1.19 2.87 45.06 0.13 1.32 16 23 H 0.06 1.21 8.00 -2.39 -0.02 1.20 16 24 C -0.13 -2.29 9.31 71.98 0.67 -1.62 16 25 H 0.06 1.38 7.22 -2.39 -0.02 1.36 16 26 H 0.04 1.13 8.14 -2.39 -0.02 1.11 16 27 H 0.10 1.70 8.14 -2.39 -0.02 1.68 16 28 H 0.07 2.34 8.07 -2.39 -0.02 2.32 16 29 H 0.10 2.28 6.44 -2.39 -0.02 2.27 16 30 H 0.02 1.15 8.07 -2.39 -0.02 1.13 16 31 H -0.01 -0.39 7.42 -2.39 -0.02 -0.40 16 32 H 0.27 15.38 8.31 -92.71 -0.77 14.61 16 33 H 0.08 2.01 7.03 -2.39 -0.02 2.00 16 34 H 0.13 2.97 6.25 -2.39 -0.01 2.96 16 35 H 0.06 2.23 7.24 -2.39 -0.02 2.21 16 36 H 0.05 1.42 7.70 -2.39 -0.02 1.40 16 37 H 0.39 6.01 9.12 -74.06 -0.68 5.34 16 38 H 0.09 1.63 7.86 -2.39 -0.02 1.61 16 39 H 0.09 1.62 7.98 -2.39 -0.02 1.60 16 40 H 0.05 1.08 8.14 -2.39 -0.02 1.06 16 41 H 0.06 0.97 7.35 -2.39 -0.02 0.95 16 42 H 0.08 1.03 8.14 -2.38 -0.02 1.01 16 Total: -1.00 -77.24 338.05 -0.42 -77.66 By element: Atomic # 1 Polarization: 14.78 SS G_CDS: 0.32 Total: 15.10 kcal Atomic # 6 Polarization: 4.32 SS G_CDS: 5.01 Total: 9.32 kcal Atomic # 7 Polarization: -98.04 SS G_CDS: -5.75 Total: -103.80 kcal Atomic # 8 Polarization: -43.63 SS G_CDS: -2.02 Total: -45.65 kcal Atomic # 14 Polarization: 45.33 SS G_CDS: 2.03 Total: 47.36 kcal Total: -77.24 -0.42 -77.66 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000340921267.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.376 kcal (2) G-P(sol) polarization free energy of solvation -77.242 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.617 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.418 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.659 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.035 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds