Wall clock time and date at job start Mon Mar 30 2020 00:54:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46500 * 109.47114 * 2 1 4 4 C 1.46508 * 119.99915 * 270.00102 * 3 2 1 5 5 C 1.50702 * 109.47051 * 270.00115 * 4 3 2 6 6 H 1.08004 * 119.99675 * 359.97438 * 5 4 3 7 7 C 1.37871 * 120.00019 * 179.97438 * 5 4 3 8 8 N 1.31510 * 120.00152 * 0.02562 * 7 5 4 9 9 Si 1.86802 * 119.99912 * 179.97438 * 7 5 4 10 10 H 1.48496 * 109.47335 * 0.02562 * 9 7 5 11 11 H 1.48510 * 109.46841 * 120.00286 * 9 7 5 12 12 H 1.48501 * 109.47423 * 239.99950 * 9 7 5 13 13 C 1.34779 * 120.00378 * 90.00130 * 3 2 1 14 14 O 1.21273 * 119.99922 * 180.02562 * 13 3 2 15 15 C 1.50695 * 119.99655 * 359.97438 * 13 3 2 16 16 N 1.46898 * 109.47072 * 180.02562 * 15 13 3 17 17 C 1.48562 * 111.00079 * 74.57853 * 16 15 13 18 18 C 1.54375 * 104.59284 * 159.04032 * 17 16 15 19 19 H 1.09004 * 110.32275 * 95.04808 * 18 17 16 20 20 O 1.42905 * 110.32489 * 217.14994 * 18 17 16 21 21 C 1.54256 * 105.06406 * 336.15229 * 18 17 16 22 22 C 1.48557 * 111.00182 * 190.00385 * 16 15 13 23 23 H 1.09004 * 110.40856 * 319.85217 * 22 16 15 24 24 C 1.52997 * 110.41557 * 82.17875 * 22 16 15 25 25 H 1.09000 * 109.47441 * 59.99814 * 1 2 3 26 26 H 1.08996 * 109.47245 * 180.02562 * 1 2 3 27 27 H 1.09005 * 109.47079 * 300.00025 * 1 2 3 28 28 H 1.08995 * 109.47027 * 239.99966 * 2 1 3 29 29 H 1.08994 * 109.47030 * 119.99640 * 2 1 3 30 30 H 1.09003 * 109.46770 * 29.99450 * 4 3 2 31 31 H 1.08993 * 109.47261 * 149.99913 * 4 3 2 32 32 H 0.97003 * 120.00560 * 179.97438 * 8 7 5 33 33 H 1.09004 * 109.47182 * 60.00135 * 15 13 3 34 34 H 1.09006 * 109.47298 * 300.00029 * 15 13 3 35 35 H 1.08992 * 110.41442 * 277.82201 * 17 16 15 36 36 H 1.09001 * 110.40770 * 40.26942 * 17 16 15 37 37 H 0.96700 * 113.99631 * 298.55057 * 20 18 17 38 38 H 1.09000 * 110.32515 * 241.10358 * 21 18 17 39 39 H 1.09000 * 110.33121 * 118.89523 * 21 18 17 40 40 H 1.09002 * 109.47153 * 59.99986 * 24 22 16 41 41 H 1.09001 * 109.46832 * 300.00176 * 24 22 16 42 42 H 1.09004 * 109.47261 * 180.02562 * 24 22 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2625 2.0719 -1.2688 5 6 3.6858 1.8350 -1.7039 6 1 4.3428 1.2308 -1.0958 7 6 4.1490 2.3896 -2.8781 8 7 3.3491 3.1256 -3.6182 9 14 5.9135 2.0966 -3.4169 10 1 6.6011 1.2414 -2.4165 11 1 5.9213 1.4169 -4.7374 12 1 6.6204 3.3979 -3.5259 13 6 2.2430 2.0166 1.1672 14 8 2.6468 3.1602 1.1671 15 6 1.9913 1.3064 2.4722 16 7 2.3091 2.2066 3.5888 17 6 1.2572 3.2428 3.7532 18 6 1.4197 3.7345 5.2075 19 1 2.0455 4.6265 5.2379 20 8 0.1412 4.0064 5.7853 21 6 2.1089 2.5710 5.9495 22 6 2.3050 1.4740 4.8811 23 1 1.4816 0.7603 4.9109 24 6 3.6396 0.7562 5.0919 25 1 -0.3634 0.5139 -0.8899 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3633 0.5139 0.8900 28 1 1.8933 -0.5138 -0.8899 29 1 1.8933 -0.5137 0.8900 30 1 1.5817 1.6876 -2.0284 31 1 2.0955 3.1410 -1.1385 32 1 3.6751 3.5161 -4.4441 33 1 2.6212 0.4187 2.5302 34 1 0.9432 1.0127 2.5298 35 1 1.4192 4.0632 3.0542 36 1 0.2687 2.8074 3.6074 37 1 -0.3562 4.7001 5.3310 38 1 1.4720 2.2054 6.7550 39 1 3.0730 2.8917 6.3441 40 1 4.4479 1.4875 5.1011 41 1 3.8019 0.0455 4.2816 42 1 3.6198 0.2240 6.0430 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000340921309.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:54:06 Heat of formation + Delta-G solvation = -79.267170 kcal Electronic energy + Delta-G solvation = -21784.669622 eV Core-core repulsion = 18571.791270 eV Total energy + Delta-G solvation = -3212.878352 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 270.173 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -39.84034 -38.48688 -36.07327 -35.17711 -32.84297 -31.87431 -30.43883 -30.06645 -27.73586 -26.03098 -25.06048 -23.01195 -22.43658 -21.08915 -20.21122 -18.34110 -17.63363 -16.53919 -16.27732 -15.86615 -15.31276 -15.04687 -14.58000 -14.38463 -14.05304 -13.84081 -13.41877 -13.24234 -12.84334 -12.79778 -12.37507 -12.22928 -12.00405 -11.85539 -11.58590 -11.43816 -11.30628 -11.15813 -11.01245 -10.87690 -10.72145 -10.66306 -10.51209 -10.10169 -10.02948 -9.58200 -8.90535 -8.41670 -8.31621 -7.61300 -6.02186 -4.06450 3.31275 3.38600 3.41805 3.49252 3.61872 4.04217 4.33425 4.47483 4.49262 4.69480 4.92022 5.13328 5.15591 5.27618 5.31652 5.32658 5.38610 5.39524 5.53468 5.63457 5.64362 5.70305 5.76435 5.84244 5.88961 5.97566 6.02044 6.10975 6.22128 6.23156 6.46407 6.85471 6.90285 7.15594 7.47107 7.51514 7.59797 7.95071 8.26632 8.47442 8.94296 9.17740 9.58893 11.05923 Molecular weight = 270.17amu Principal moments of inertia in cm(-1) A = 0.021897 B = 0.004678 C = 0.004514 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1278.430567 B = 5983.711337 C = 6201.216614 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.107 3.893 3 N -0.601 5.601 4 C 0.248 3.752 5 C -0.523 4.523 6 H 0.057 0.943 7 C 0.060 3.940 8 N -0.896 5.896 9 Si 0.897 3.103 10 H -0.273 1.273 11 H -0.284 1.284 12 H -0.283 1.283 13 C 0.508 3.492 14 O -0.524 6.524 15 C 0.026 3.974 16 N -0.481 5.481 17 C 0.004 3.996 18 C 0.098 3.902 19 H 0.070 0.930 20 O -0.569 6.569 21 C -0.112 4.112 22 C 0.056 3.944 23 H 0.052 0.948 24 C -0.137 4.137 25 H 0.061 0.939 26 H 0.059 0.941 27 H 0.047 0.953 28 H 0.082 0.918 29 H 0.062 0.938 30 H 0.031 0.969 31 H 0.042 0.958 32 H 0.262 0.738 33 H 0.097 0.903 34 H 0.058 0.942 35 H 0.097 0.903 36 H 0.048 0.952 37 H 0.379 0.621 38 H 0.079 0.921 39 H 0.082 0.918 40 H 0.066 0.934 41 H 0.056 0.944 42 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.246 -5.459 16.169 18.173 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.017 4.017 3 N -0.334 5.334 4 C 0.129 3.871 5 C -0.562 4.562 6 H 0.076 0.924 7 C -0.141 4.141 8 N -0.535 5.535 9 Si 0.725 3.275 10 H -0.198 1.198 11 H -0.210 1.210 12 H -0.209 1.209 13 C 0.293 3.707 14 O -0.399 6.399 15 C -0.105 4.105 16 N -0.206 5.206 17 C -0.124 4.124 18 C 0.038 3.962 19 H 0.088 0.912 20 O -0.374 6.374 21 C -0.149 4.149 22 C -0.052 4.052 23 H 0.070 0.930 24 C -0.195 4.195 25 H 0.080 0.920 26 H 0.078 0.922 27 H 0.067 0.933 28 H 0.101 0.899 29 H 0.080 0.920 30 H 0.049 0.951 31 H 0.060 0.940 32 H 0.072 0.928 33 H 0.116 0.884 34 H 0.076 0.924 35 H 0.116 0.884 36 H 0.066 0.934 37 H 0.226 0.774 38 H 0.098 0.902 39 H 0.101 0.899 40 H 0.085 0.915 41 H 0.075 0.925 42 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -5.315 -4.975 16.265 17.820 hybrid contribution -0.043 -0.231 -0.844 0.876 sum -5.358 -5.206 15.421 17.135 Atomic orbital electron populations 1.22223 0.96948 1.01342 1.02186 1.21388 0.93369 0.84428 1.02561 1.48264 1.64229 1.13200 1.07702 1.19240 0.96225 0.93566 0.78103 1.21484 0.96945 1.31689 1.06082 0.92436 1.24930 0.97817 0.94959 0.96424 1.69941 1.35596 1.33635 1.14363 0.86453 0.84725 0.78055 0.78245 1.19800 1.21026 1.20887 1.20069 0.78859 0.87132 0.84596 1.90648 1.44593 1.17848 1.86858 1.22284 1.00400 0.96458 0.91406 1.65092 1.43452 1.10844 1.01211 1.23911 0.93509 0.97419 0.97569 1.22571 0.84333 0.97905 0.91350 0.91225 1.86495 1.31217 1.61263 1.58471 1.22364 1.00684 0.94274 0.97618 1.22693 0.97959 0.95045 0.89502 0.92985 1.21734 0.96450 1.00269 1.01043 0.91993 0.92201 0.93349 0.89924 0.91992 0.95137 0.94006 0.92831 0.88448 0.92408 0.88448 0.93393 0.77351 0.90212 0.89931 0.91501 0.92483 0.92320 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.26 10.24 37.16 0.38 -1.88 16 2 C 0.11 1.71 5.93 -4.04 -0.02 1.69 16 3 N -0.60 -12.73 2.46 -175.06 -0.43 -13.16 16 4 C 0.25 6.51 5.16 -5.19 -0.03 6.48 16 5 C -0.52 -14.97 9.39 -34.44 -0.32 -15.29 16 6 H 0.06 1.66 7.81 -52.48 -0.41 1.25 16 7 C 0.06 1.74 5.46 -17.82 -0.10 1.64 16 8 N -0.90 -26.81 13.29 55.43 0.74 -26.08 16 9 Si 0.90 22.09 29.54 -169.99 -5.02 17.07 16 10 H -0.27 -6.65 7.11 56.52 0.40 -6.24 16 11 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 12 H -0.28 -6.97 7.11 56.52 0.40 -6.57 16 13 C 0.51 10.67 7.52 -10.99 -0.08 10.59 16 14 O -0.52 -13.29 14.80 5.56 0.08 -13.21 16 15 C 0.03 0.41 3.82 -4.98 -0.02 0.39 16 16 N -0.48 -7.31 4.66 -223.57 -1.04 -8.35 16 17 C 0.00 0.06 5.65 -2.18 -0.01 0.05 16 18 C 0.10 1.17 4.42 -25.35 -0.11 1.06 16 19 H 0.07 0.82 8.14 -51.93 -0.42 0.39 16 20 O -0.57 -6.33 13.28 -35.23 -0.47 -6.80 16 21 C -0.11 -1.23 6.36 -25.35 -0.16 -1.39 16 22 C 0.06 0.67 2.88 -66.07 -0.19 0.48 16 23 H 0.05 0.59 7.99 -51.93 -0.42 0.17 16 24 C -0.14 -1.46 9.36 37.16 0.35 -1.12 16 25 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 26 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 27 H 0.05 0.62 7.22 -51.93 -0.37 0.25 16 28 H 0.08 1.38 8.07 -51.93 -0.42 0.96 16 29 H 0.06 0.83 6.44 -51.93 -0.33 0.49 16 30 H 0.03 0.81 8.07 -51.93 -0.42 0.39 16 31 H 0.04 1.24 7.42 -51.93 -0.39 0.86 16 32 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 33 H 0.10 1.38 6.42 -51.93 -0.33 1.04 16 34 H 0.06 0.80 6.81 -51.93 -0.35 0.44 16 35 H 0.10 1.61 7.23 -51.93 -0.38 1.24 16 36 H 0.05 0.66 7.69 -51.93 -0.40 0.26 16 37 H 0.38 2.80 9.11 45.56 0.41 3.21 16 38 H 0.08 0.83 7.99 -51.93 -0.41 0.42 16 39 H 0.08 0.84 7.82 -51.93 -0.41 0.44 16 40 H 0.07 0.77 8.09 -51.93 -0.42 0.35 16 41 H 0.06 0.62 7.28 -51.93 -0.38 0.25 16 42 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 LS Contribution 337.86 15.07 5.09 5.09 Total: -1.00 -34.11 337.86 -7.62 -41.73 By element: Atomic # 1 Polarization: 7.27 SS G_CDS: -6.25 Total: 1.02 kcal Atomic # 6 Polarization: 3.02 SS G_CDS: -0.32 Total: 2.69 kcal Atomic # 7 Polarization: -46.86 SS G_CDS: -0.73 Total: -47.59 kcal Atomic # 8 Polarization: -19.62 SS G_CDS: -0.39 Total: -20.01 kcal Atomic # 14 Polarization: 22.09 SS G_CDS: -5.02 Total: 17.07 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -34.11 -7.62 -41.73 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000340921309.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.539 kcal (2) G-P(sol) polarization free energy of solvation -34.109 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.648 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.620 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.728 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.267 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds