Wall clock time and date at job start Mon Mar 30 2020 00:54:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46500 * 109.47114 * 2 1 4 4 C 1.46508 * 119.99915 * 270.00102 * 3 2 1 5 5 C 1.50702 * 109.47051 * 270.00115 * 4 3 2 6 6 H 1.08004 * 119.99675 * 359.97438 * 5 4 3 7 7 C 1.37871 * 120.00019 * 179.97438 * 5 4 3 8 8 N 1.31510 * 120.00152 * 0.02562 * 7 5 4 9 9 Si 1.86802 * 119.99912 * 179.97438 * 7 5 4 10 10 H 1.48496 * 109.47335 * 0.02562 * 9 7 5 11 11 H 1.48510 * 109.46841 * 120.00286 * 9 7 5 12 12 H 1.48501 * 109.47423 * 239.99950 * 9 7 5 13 13 C 1.34779 * 120.00378 * 90.00130 * 3 2 1 14 14 O 1.21273 * 119.99922 * 180.02562 * 13 3 2 15 15 C 1.50695 * 119.99655 * 359.97438 * 13 3 2 16 16 N 1.46898 * 109.47072 * 180.02562 * 15 13 3 17 17 C 1.48562 * 111.00079 * 74.57853 * 16 15 13 18 18 C 1.54375 * 104.59284 * 159.04032 * 17 16 15 19 19 H 1.09004 * 110.32275 * 95.04808 * 18 17 16 20 20 O 1.42905 * 110.32489 * 217.14994 * 18 17 16 21 21 C 1.54256 * 105.06406 * 336.15229 * 18 17 16 22 22 C 1.48557 * 111.00182 * 190.00385 * 16 15 13 23 23 H 1.09004 * 110.40856 * 319.85217 * 22 16 15 24 24 C 1.52997 * 110.41557 * 82.17875 * 22 16 15 25 25 H 1.09000 * 109.47441 * 59.99814 * 1 2 3 26 26 H 1.08996 * 109.47245 * 180.02562 * 1 2 3 27 27 H 1.09005 * 109.47079 * 300.00025 * 1 2 3 28 28 H 1.08995 * 109.47027 * 239.99966 * 2 1 3 29 29 H 1.08994 * 109.47030 * 119.99640 * 2 1 3 30 30 H 1.09003 * 109.46770 * 29.99450 * 4 3 2 31 31 H 1.08993 * 109.47261 * 149.99913 * 4 3 2 32 32 H 0.97003 * 120.00560 * 179.97438 * 8 7 5 33 33 H 1.09004 * 109.47182 * 60.00135 * 15 13 3 34 34 H 1.09006 * 109.47298 * 300.00029 * 15 13 3 35 35 H 1.08992 * 110.41442 * 277.82201 * 17 16 15 36 36 H 1.09001 * 110.40770 * 40.26942 * 17 16 15 37 37 H 0.96700 * 113.99631 * 298.55057 * 20 18 17 38 38 H 1.09000 * 110.32515 * 241.10358 * 21 18 17 39 39 H 1.09000 * 110.33121 * 118.89523 * 21 18 17 40 40 H 1.09002 * 109.47153 * 59.99986 * 24 22 16 41 41 H 1.09001 * 109.46832 * 300.00176 * 24 22 16 42 42 H 1.09004 * 109.47261 * 180.02562 * 24 22 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2625 2.0719 -1.2688 5 6 3.6858 1.8350 -1.7039 6 1 4.3428 1.2308 -1.0958 7 6 4.1490 2.3896 -2.8781 8 7 3.3491 3.1256 -3.6182 9 14 5.9135 2.0966 -3.4169 10 1 6.6011 1.2414 -2.4165 11 1 5.9213 1.4169 -4.7374 12 1 6.6204 3.3979 -3.5259 13 6 2.2430 2.0166 1.1672 14 8 2.6468 3.1602 1.1671 15 6 1.9913 1.3064 2.4722 16 7 2.3091 2.2066 3.5888 17 6 1.2572 3.2428 3.7532 18 6 1.4197 3.7345 5.2075 19 1 2.0455 4.6265 5.2379 20 8 0.1412 4.0064 5.7853 21 6 2.1089 2.5710 5.9495 22 6 2.3050 1.4740 4.8811 23 1 1.4816 0.7603 4.9109 24 6 3.6396 0.7562 5.0919 25 1 -0.3634 0.5139 -0.8899 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3633 0.5139 0.8900 28 1 1.8933 -0.5138 -0.8899 29 1 1.8933 -0.5137 0.8900 30 1 1.5817 1.6876 -2.0284 31 1 2.0955 3.1410 -1.1385 32 1 3.6751 3.5161 -4.4441 33 1 2.6212 0.4187 2.5302 34 1 0.9432 1.0127 2.5298 35 1 1.4192 4.0632 3.0542 36 1 0.2687 2.8074 3.6074 37 1 -0.3562 4.7001 5.3310 38 1 1.4720 2.2054 6.7550 39 1 3.0730 2.8917 6.3441 40 1 4.4479 1.4875 5.1011 41 1 3.8019 0.0455 4.2816 42 1 3.6198 0.2240 6.0430 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000340921309.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:54:06 Heat of formation + Delta-G solvation = -105.865876 kcal Electronic energy + Delta-G solvation = -21785.823028 eV Core-core repulsion = 18571.791270 eV Total energy + Delta-G solvation = -3214.031758 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 270.173 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.12681 -39.84854 -37.10417 -36.78231 -34.92865 -33.01508 -31.61920 -31.38138 -29.43793 -27.43464 -26.21441 -24.70229 -23.95696 -22.15973 -21.15987 -19.90624 -18.61620 -18.57441 -17.86991 -17.30415 -16.63912 -16.49917 -16.07390 -15.62475 -15.36480 -14.85964 -14.79937 -14.59315 -14.19484 -14.07898 -13.82943 -13.54472 -13.28046 -13.15710 -13.03857 -12.84989 -12.70458 -12.51032 -12.42219 -12.21882 -12.13816 -12.00052 -11.88706 -11.67577 -11.59561 -10.96443 -10.65211 -10.53930 -9.51468 -9.37020 -8.22516 -6.37215 1.35531 1.38251 1.50082 1.87073 2.21847 2.40322 2.88936 3.06937 3.38310 3.54988 3.60790 3.89903 4.01992 4.08727 4.17581 4.20100 4.35509 4.42341 4.46299 4.46634 4.61626 4.75178 4.83168 4.90999 4.93128 4.97170 5.00536 5.00921 5.04520 5.18721 5.21655 5.35897 5.39062 5.58364 5.78450 5.86465 5.97085 6.07291 6.71330 6.78165 6.83543 7.29356 7.54638 8.84682 Molecular weight = 270.17amu Principal moments of inertia in cm(-1) A = 0.021897 B = 0.004678 C = 0.004514 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1278.430567 B = 5983.711337 C = 6201.216614 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.100 3.900 3 N -0.607 5.607 4 C 0.264 3.736 5 C -0.540 4.540 6 H 0.052 0.948 7 C 0.007 3.993 8 N -0.930 5.930 9 Si 0.968 3.032 10 H -0.267 1.267 11 H -0.268 1.268 12 H -0.282 1.282 13 C 0.498 3.502 14 O -0.580 6.580 15 C 0.042 3.958 16 N -0.508 5.508 17 C 0.007 3.993 18 C 0.104 3.896 19 H 0.067 0.933 20 O -0.574 6.574 21 C -0.108 4.108 22 C 0.058 3.942 23 H 0.067 0.933 24 C -0.135 4.135 25 H 0.038 0.962 26 H 0.096 0.904 27 H 0.056 0.944 28 H 0.072 0.928 29 H 0.098 0.902 30 H 0.021 0.979 31 H -0.006 1.006 32 H 0.267 0.733 33 H 0.119 0.881 34 H 0.084 0.916 35 H 0.061 0.939 36 H 0.053 0.947 37 H 0.394 0.606 38 H 0.092 0.908 39 H 0.089 0.911 40 H 0.052 0.948 41 H 0.054 0.946 42 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.090 -7.775 17.968 20.504 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.023 4.023 3 N -0.339 5.339 4 C 0.143 3.857 5 C -0.578 4.578 6 H 0.070 0.930 7 C -0.192 4.192 8 N -0.570 5.570 9 Si 0.792 3.208 10 H -0.191 1.191 11 H -0.193 1.193 12 H -0.208 1.208 13 C 0.286 3.714 14 O -0.460 6.460 15 C -0.089 4.089 16 N -0.234 5.234 17 C -0.121 4.121 18 C 0.044 3.956 19 H 0.085 0.915 20 O -0.381 6.381 21 C -0.146 4.146 22 C -0.049 4.049 23 H 0.085 0.915 24 C -0.193 4.193 25 H 0.057 0.943 26 H 0.115 0.885 27 H 0.075 0.925 28 H 0.091 0.909 29 H 0.117 0.883 30 H 0.039 0.961 31 H 0.012 0.988 32 H 0.076 0.924 33 H 0.137 0.863 34 H 0.102 0.898 35 H 0.080 0.920 36 H 0.072 0.928 37 H 0.244 0.756 38 H 0.110 0.890 39 H 0.108 0.892 40 H 0.072 0.928 41 H 0.073 0.927 42 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -5.193 -7.335 18.083 20.193 hybrid contribution -0.151 0.523 -1.400 1.502 sum -5.343 -6.812 16.683 18.796 Atomic orbital electron populations 1.22146 0.94689 1.03493 1.01461 1.21731 0.95203 0.81462 1.03877 1.48299 1.64294 1.15119 1.06181 1.18662 0.95243 0.91385 0.80434 1.21737 0.97878 1.31850 1.06383 0.92976 1.25855 1.02388 0.94475 0.96437 1.70058 1.37717 1.34344 1.14847 0.85367 0.79026 0.77999 0.78401 1.19128 1.19325 1.20815 1.21130 0.77400 0.86718 0.86170 1.90617 1.47047 1.20483 1.87809 1.22149 1.02322 0.96119 0.88285 1.65020 1.44143 1.11686 1.02570 1.23805 0.93557 0.96451 0.98325 1.22464 0.84833 0.98248 0.90046 0.91543 1.86462 1.30959 1.62082 1.58627 1.22387 1.01181 0.93524 0.97502 1.22798 0.99138 0.95302 0.87662 0.91494 1.21745 0.95242 0.99900 1.02380 0.94290 0.88508 0.92538 0.90899 0.88348 0.96129 0.98790 0.92442 0.86283 0.89784 0.92014 0.92850 0.75645 0.88996 0.89209 0.92838 0.92728 0.89694 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.95 10.24 71.98 0.74 -3.22 16 2 C 0.10 3.04 5.93 86.38 0.51 3.55 16 3 N -0.61 -26.12 2.46 -826.16 -2.03 -28.15 16 4 C 0.26 14.57 5.16 85.63 0.44 15.01 16 5 C -0.54 -31.76 9.39 25.60 0.24 -31.52 16 6 H 0.05 3.05 7.81 -2.91 -0.02 3.02 16 7 C 0.01 0.42 5.46 84.65 0.46 0.88 16 8 N -0.93 -57.13 13.29 21.44 0.28 -56.85 16 9 Si 0.97 45.68 29.54 68.60 2.03 47.71 16 10 H -0.27 -12.22 7.11 99.48 0.71 -11.52 16 11 H -0.27 -11.91 7.11 99.48 0.71 -11.21 16 12 H -0.28 -13.24 7.11 99.48 0.71 -12.53 16 13 C 0.50 21.22 7.52 87.66 0.66 21.88 16 14 O -0.58 -30.94 14.80 -3.01 -0.04 -30.98 16 15 C 0.04 1.24 3.82 85.56 0.33 1.57 16 16 N -0.51 -14.86 4.66 -861.25 -4.01 -18.87 16 17 C 0.01 0.20 5.65 86.45 0.49 0.69 16 18 C 0.10 2.36 4.42 31.49 0.14 2.50 16 19 H 0.07 1.54 8.14 -2.39 -0.02 1.52 16 20 O -0.57 -11.76 13.28 -148.98 -1.98 -13.73 16 21 C -0.11 -2.12 6.36 31.49 0.20 -1.92 16 22 C 0.06 1.22 2.88 45.06 0.13 1.35 16 23 H 0.07 1.23 7.99 -2.38 -0.02 1.21 16 24 C -0.14 -2.49 9.36 71.98 0.67 -1.82 16 25 H 0.04 1.13 8.14 -2.39 -0.02 1.12 16 26 H 0.10 1.71 8.14 -2.39 -0.02 1.69 16 27 H 0.06 1.31 7.22 -2.38 -0.02 1.29 16 28 H 0.07 2.37 8.07 -2.39 -0.02 2.35 16 29 H 0.10 2.29 6.44 -2.39 -0.02 2.28 16 30 H 0.02 1.16 8.07 -2.39 -0.02 1.14 16 31 H -0.01 -0.39 7.42 -2.39 -0.02 -0.40 16 32 H 0.27 15.30 8.31 -92.71 -0.77 14.53 16 33 H 0.12 2.98 6.42 -2.38 -0.02 2.96 16 34 H 0.08 2.04 6.81 -2.38 -0.02 2.02 16 35 H 0.06 2.16 7.23 -2.39 -0.02 2.15 16 36 H 0.05 1.41 7.69 -2.39 -0.02 1.39 16 37 H 0.39 5.33 9.11 -74.06 -0.67 4.65 16 38 H 0.09 1.61 7.99 -2.39 -0.02 1.59 16 39 H 0.09 1.62 7.82 -2.39 -0.02 1.60 16 40 H 0.05 1.13 8.09 -2.39 -0.02 1.11 16 41 H 0.05 1.03 7.28 -2.39 -0.02 1.01 16 42 H 0.08 1.12 8.14 -2.38 -0.02 1.10 16 Total: -1.00 -77.43 337.86 -0.42 -77.84 By element: Atomic # 1 Polarization: 13.75 SS G_CDS: 0.33 Total: 14.08 kcal Atomic # 6 Polarization: 3.95 SS G_CDS: 5.01 Total: 8.96 kcal Atomic # 7 Polarization: -98.12 SS G_CDS: -5.76 Total: -103.87 kcal Atomic # 8 Polarization: -42.69 SS G_CDS: -2.02 Total: -44.72 kcal Atomic # 14 Polarization: 45.68 SS G_CDS: 2.03 Total: 47.71 kcal Total: -77.43 -0.42 -77.84 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000340921309.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.021 kcal (2) G-P(sol) polarization free energy of solvation -77.430 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.451 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.415 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.845 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.866 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds