Wall clock time and date at job start Mon Mar 30 2020 00:54:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46498 * 109.46846 * 2 1 4 4 C 1.46497 * 120.00371 * 269.99683 * 3 2 1 5 5 C 1.50701 * 109.47052 * 270.00597 * 4 3 2 6 6 H 1.07993 * 120.00287 * 359.97438 * 5 4 3 7 7 C 1.37884 * 119.99902 * 179.97438 * 5 4 3 8 8 N 1.31514 * 119.99636 * 0.02562 * 7 5 4 9 9 Si 1.86792 * 120.00259 * 180.02562 * 7 5 4 10 10 H 1.48508 * 109.47016 * 359.97438 * 9 7 5 11 11 H 1.48494 * 109.47225 * 119.99900 * 9 7 5 12 12 H 1.48503 * 109.47027 * 240.00457 * 9 7 5 13 13 C 1.34779 * 119.99765 * 90.00339 * 3 2 1 14 14 O 1.21282 * 120.00185 * 179.97438 * 13 3 2 15 15 C 1.50701 * 120.00183 * 359.97438 * 13 3 2 16 16 N 1.46902 * 109.47045 * 180.02562 * 15 13 3 17 17 C 1.48064 * 111.16339 * 52.60573 * 16 15 13 18 18 C 1.53988 * 107.14384 * 145.62939 * 17 16 15 19 19 H 1.09001 * 110.31087 * 239.99908 * 18 17 16 20 20 O 1.42904 * 110.30789 * 117.83132 * 18 17 16 21 21 C 1.54601 * 105.13914 * 358.91918 * 18 17 16 22 22 C 1.48539 * 110.99769 * 170.00035 * 16 15 13 23 23 H 1.09004 * 110.66525 * 318.88043 * 22 16 15 24 24 C 1.52997 * 110.66812 * 81.84258 * 22 16 15 25 25 H 1.08999 * 109.47140 * 299.99834 * 1 2 3 26 26 H 1.09002 * 109.46900 * 59.99698 * 1 2 3 27 27 H 1.08998 * 109.46989 * 179.97438 * 1 2 3 28 28 H 1.08999 * 109.47140 * 240.00166 * 2 1 3 29 29 H 1.09002 * 109.46900 * 120.00302 * 2 1 3 30 30 H 1.09005 * 109.46966 * 30.00543 * 4 3 2 31 31 H 1.09000 * 109.47140 * 150.00098 * 4 3 2 32 32 H 0.97004 * 120.00156 * 179.97438 * 8 7 5 33 33 H 1.09000 * 109.47233 * 59.99855 * 15 13 3 34 34 H 1.09001 * 109.46780 * 300.00195 * 15 13 3 35 35 H 1.09006 * 109.75660 * 26.31702 * 17 16 15 36 36 H 1.08994 * 110.15485 * 265.17014 * 17 16 15 37 37 H 0.96697 * 113.99997 * 64.28586 * 20 18 17 38 38 H 1.09003 * 110.72354 * 219.68604 * 21 18 17 39 39 H 1.09000 * 110.72751 * 96.39851 * 21 18 17 40 40 H 1.09002 * 109.47153 * 177.69425 * 24 22 16 41 41 H 1.09001 * 109.46832 * 57.69616 * 24 22 16 42 42 H 1.09004 * 109.47261 * 297.69597 * 24 22 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2625 2.0719 -1.2687 5 6 3.6858 1.8350 -1.7037 6 1 4.3429 1.2309 -1.0957 7 6 4.1492 2.3897 -2.8779 8 7 3.3492 3.1259 -3.6179 9 14 5.9131 2.0956 -3.4175 10 1 6.6009 1.2405 -2.4169 11 1 5.9201 1.4165 -4.7380 12 1 6.6210 3.3966 -3.5261 13 6 2.2430 2.0165 1.1673 14 8 2.6476 3.1598 1.1673 15 6 1.9913 1.3063 2.4724 16 7 2.3091 2.2064 3.5889 17 6 1.6031 3.5005 3.4499 18 6 1.2496 3.9795 4.8700 19 1 0.1701 4.0883 4.9749 20 8 1.9037 5.2182 5.1528 21 6 1.7712 2.8701 5.8119 22 6 1.8509 1.6343 4.8809 23 1 0.8700 1.1718 4.7705 24 6 2.8665 0.6215 5.4134 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 -1.0276 -0.0005 28 1 1.8934 -0.5138 -0.8900 29 1 1.8933 -0.5139 0.8900 30 1 1.5817 1.6878 -2.0284 31 1 2.0955 3.1411 -1.1383 32 1 3.6752 3.5164 -4.4438 33 1 2.6212 0.4185 2.5302 34 1 0.9433 1.0124 2.5299 35 1 0.6923 3.3625 2.8671 36 1 2.2491 4.2302 2.9618 37 1 1.6163 5.9517 4.5920 38 1 1.0689 2.6943 6.6269 39 1 2.7575 3.1253 6.1995 40 1 2.5316 0.2449 6.3799 41 1 3.8363 1.1057 5.5284 42 1 2.9553 -0.2076 4.7113 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000340921310.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:54:08 Heat of formation + Delta-G solvation = -77.470382 kcal Electronic energy + Delta-G solvation = -21877.527315 eV Core-core repulsion = 18664.726878 eV Total energy + Delta-G solvation = -3212.800437 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 270.173 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -39.91561 -38.41877 -35.96936 -35.24381 -32.85017 -31.81079 -30.38157 -30.09494 -27.74962 -26.00158 -25.05866 -23.03676 -22.43133 -20.96963 -20.37415 -18.29499 -17.17920 -16.67500 -16.32794 -15.94612 -15.60718 -15.05068 -14.59829 -14.29574 -13.85716 -13.69906 -13.41797 -13.04773 -13.03562 -12.71233 -12.25249 -12.21082 -12.01783 -11.84091 -11.59825 -11.55760 -11.40328 -11.18598 -10.94129 -10.87753 -10.73580 -10.59857 -10.51855 -10.12277 -9.96286 -9.59032 -8.81713 -8.42628 -8.22849 -7.64452 -6.03344 -4.07595 3.31111 3.37957 3.40434 3.46092 3.70053 4.11018 4.18068 4.46353 4.63766 4.68516 5.01177 5.08636 5.13625 5.27181 5.31786 5.32488 5.37416 5.41289 5.57402 5.61490 5.65664 5.70050 5.74350 5.84049 5.89129 6.00164 6.05785 6.20377 6.21432 6.41102 6.44119 6.94416 6.99566 7.15632 7.44535 7.57045 7.66570 7.93731 8.24980 8.43151 8.92485 9.12467 9.57726 11.04790 Molecular weight = 270.17amu Principal moments of inertia in cm(-1) A = 0.020489 B = 0.004937 C = 0.004588 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1366.281368 B = 5669.577755 C = 6101.565156 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.106 3.894 3 N -0.598 5.598 4 C 0.248 3.752 5 C -0.524 4.524 6 H 0.058 0.942 7 C 0.060 3.940 8 N -0.896 5.896 9 Si 0.898 3.102 10 H -0.273 1.273 11 H -0.284 1.284 12 H -0.283 1.283 13 C 0.505 3.495 14 O -0.527 6.527 15 C 0.028 3.972 16 N -0.490 5.490 17 C 0.017 3.983 18 C 0.089 3.911 19 H 0.057 0.943 20 O -0.561 6.561 21 C -0.110 4.110 22 C 0.058 3.942 23 H 0.052 0.948 24 C -0.135 4.135 25 H 0.047 0.953 26 H 0.061 0.939 27 H 0.060 0.940 28 H 0.083 0.917 29 H 0.063 0.937 30 H 0.031 0.969 31 H 0.042 0.958 32 H 0.262 0.738 33 H 0.099 0.901 34 H 0.056 0.944 35 H 0.041 0.959 36 H 0.110 0.890 37 H 0.379 0.621 38 H 0.074 0.926 39 H 0.088 0.912 40 H 0.058 0.942 41 H 0.066 0.934 42 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.893 -5.582 15.757 18.486 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.018 4.018 3 N -0.331 5.331 4 C 0.128 3.872 5 C -0.563 4.563 6 H 0.076 0.924 7 C -0.141 4.141 8 N -0.535 5.535 9 Si 0.726 3.274 10 H -0.198 1.198 11 H -0.210 1.210 12 H -0.209 1.209 13 C 0.291 3.709 14 O -0.404 6.404 15 C -0.104 4.104 16 N -0.216 5.216 17 C -0.111 4.111 18 C 0.029 3.971 19 H 0.075 0.925 20 O -0.367 6.367 21 C -0.148 4.148 22 C -0.050 4.050 23 H 0.070 0.930 24 C -0.193 4.193 25 H 0.066 0.934 26 H 0.080 0.920 27 H 0.079 0.921 28 H 0.101 0.899 29 H 0.081 0.919 30 H 0.049 0.951 31 H 0.060 0.940 32 H 0.072 0.928 33 H 0.117 0.883 34 H 0.074 0.926 35 H 0.059 0.941 36 H 0.128 0.872 37 H 0.227 0.773 38 H 0.093 0.907 39 H 0.106 0.894 40 H 0.077 0.923 41 H 0.085 0.915 42 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -6.818 -5.159 15.991 18.133 hybrid contribution -0.317 -0.119 -1.054 1.107 sum -7.135 -5.278 14.937 17.375 Atomic orbital electron populations 1.22220 0.96926 1.01380 1.02147 1.21409 0.93371 0.84355 1.02683 1.48253 1.63949 1.13212 1.07685 1.19251 0.96284 0.93548 0.78068 1.21479 0.96910 1.31747 1.06121 0.92409 1.24934 0.97855 0.94929 0.96406 1.69943 1.35607 1.33608 1.14368 0.86443 0.84665 0.78084 0.78245 1.19779 1.21013 1.20873 1.20125 0.78856 0.87097 0.84845 1.90645 1.44998 1.17938 1.86771 1.22336 1.00153 0.97041 0.90824 1.64593 1.54301 1.02476 1.00219 1.23703 0.97861 0.93826 0.95702 1.22751 0.94784 0.84989 0.94534 0.92482 1.86510 1.67904 1.19263 1.62979 1.22533 1.02998 0.92492 0.96784 1.22841 0.97070 0.95127 0.89967 0.92998 1.21673 0.99486 0.98092 1.00047 0.93372 0.92016 0.92147 0.89872 0.91850 0.95115 0.94001 0.92820 0.88290 0.92642 0.94079 0.87212 0.77345 0.90739 0.89357 0.92337 0.91494 0.92538 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.21 10.24 37.16 0.38 -1.83 16 2 C 0.11 1.68 5.93 -4.04 -0.02 1.66 16 3 N -0.60 -12.58 2.46 -175.06 -0.43 -13.01 16 4 C 0.25 6.47 5.16 -5.19 -0.03 6.44 16 5 C -0.52 -14.97 9.39 -34.44 -0.32 -15.29 16 6 H 0.06 1.67 7.81 -52.49 -0.41 1.26 16 7 C 0.06 1.74 5.46 -17.82 -0.10 1.65 16 8 N -0.90 -26.76 13.29 55.43 0.74 -26.02 16 9 Si 0.90 22.13 29.54 -169.99 -5.02 17.10 16 10 H -0.27 -6.66 7.11 56.52 0.40 -6.26 16 11 H -0.28 -6.80 7.11 56.52 0.40 -6.39 16 12 H -0.28 -6.98 7.11 56.52 0.40 -6.58 16 13 C 0.50 10.52 7.25 -10.98 -0.08 10.44 16 14 O -0.53 -13.15 13.39 5.56 0.07 -13.07 16 15 C 0.03 0.43 3.89 -4.97 -0.02 0.41 16 16 N -0.49 -7.61 4.96 -223.91 -1.11 -8.72 16 17 C 0.02 0.26 4.89 -2.67 -0.01 0.25 16 18 C 0.09 1.11 4.36 -25.37 -0.11 1.00 16 19 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 20 O -0.56 -7.34 13.25 -35.23 -0.47 -7.81 16 21 C -0.11 -1.25 6.24 -24.87 -0.16 -1.41 16 22 C 0.06 0.68 2.91 -65.78 -0.19 0.49 16 23 H 0.05 0.55 7.85 -51.93 -0.41 0.14 16 24 C -0.14 -1.39 9.49 37.16 0.35 -1.03 16 25 H 0.05 0.60 7.22 -51.93 -0.37 0.23 16 26 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 27 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 28 H 0.08 1.38 8.07 -51.93 -0.42 0.96 16 29 H 0.06 0.84 6.44 -51.93 -0.33 0.50 16 30 H 0.03 0.81 8.07 -51.93 -0.42 0.39 16 31 H 0.04 1.24 7.42 -51.93 -0.39 0.85 16 32 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 33 H 0.10 1.41 7.01 -51.93 -0.36 1.05 16 34 H 0.06 0.74 6.93 -51.93 -0.36 0.38 16 35 H 0.04 0.64 7.59 -51.93 -0.39 0.25 16 36 H 0.11 2.07 6.59 -51.93 -0.34 1.72 16 37 H 0.38 3.58 9.12 45.56 0.42 3.99 16 38 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 39 H 0.09 1.11 7.99 -51.93 -0.42 0.69 16 40 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 41 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 42 H 0.06 0.57 7.72 -51.93 -0.40 0.16 16 LS Contribution 336.40 15.07 5.07 5.07 Total: -1.00 -34.05 336.40 -7.74 -41.79 By element: Atomic # 1 Polarization: 8.17 SS G_CDS: -6.28 Total: 1.89 kcal Atomic # 6 Polarization: 3.09 SS G_CDS: -0.31 Total: 2.78 kcal Atomic # 7 Polarization: -46.95 SS G_CDS: -0.80 Total: -47.75 kcal Atomic # 8 Polarization: -20.49 SS G_CDS: -0.39 Total: -20.88 kcal Atomic # 14 Polarization: 22.13 SS G_CDS: -5.02 Total: 17.10 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -34.05 -7.74 -41.79 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000340921310.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.682 kcal (2) G-P(sol) polarization free energy of solvation -34.051 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.733 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.737 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.789 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.470 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds