Wall clock time and date at job start Mon Mar 30 2020 00:54:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46498 * 109.46846 * 2 1 4 4 C 1.46497 * 120.00371 * 269.99683 * 3 2 1 5 5 C 1.50701 * 109.47052 * 270.00597 * 4 3 2 6 6 H 1.07993 * 120.00287 * 359.97438 * 5 4 3 7 7 C 1.37884 * 119.99902 * 179.97438 * 5 4 3 8 8 N 1.31514 * 119.99636 * 0.02562 * 7 5 4 9 9 Si 1.86792 * 120.00259 * 180.02562 * 7 5 4 10 10 H 1.48508 * 109.47016 * 359.97438 * 9 7 5 11 11 H 1.48494 * 109.47225 * 119.99900 * 9 7 5 12 12 H 1.48503 * 109.47027 * 240.00457 * 9 7 5 13 13 C 1.34779 * 119.99765 * 90.00339 * 3 2 1 14 14 O 1.21282 * 120.00185 * 179.97438 * 13 3 2 15 15 C 1.50701 * 120.00183 * 359.97438 * 13 3 2 16 16 N 1.46902 * 109.47045 * 180.02562 * 15 13 3 17 17 C 1.48064 * 111.16339 * 52.60573 * 16 15 13 18 18 C 1.53988 * 107.14384 * 145.62939 * 17 16 15 19 19 H 1.09001 * 110.31087 * 239.99908 * 18 17 16 20 20 O 1.42904 * 110.30789 * 117.83132 * 18 17 16 21 21 C 1.54601 * 105.13914 * 358.91918 * 18 17 16 22 22 C 1.48539 * 110.99769 * 170.00035 * 16 15 13 23 23 H 1.09004 * 110.66525 * 318.88043 * 22 16 15 24 24 C 1.52997 * 110.66812 * 81.84258 * 22 16 15 25 25 H 1.08999 * 109.47140 * 299.99834 * 1 2 3 26 26 H 1.09002 * 109.46900 * 59.99698 * 1 2 3 27 27 H 1.08998 * 109.46989 * 179.97438 * 1 2 3 28 28 H 1.08999 * 109.47140 * 240.00166 * 2 1 3 29 29 H 1.09002 * 109.46900 * 120.00302 * 2 1 3 30 30 H 1.09005 * 109.46966 * 30.00543 * 4 3 2 31 31 H 1.09000 * 109.47140 * 150.00098 * 4 3 2 32 32 H 0.97004 * 120.00156 * 179.97438 * 8 7 5 33 33 H 1.09000 * 109.47233 * 59.99855 * 15 13 3 34 34 H 1.09001 * 109.46780 * 300.00195 * 15 13 3 35 35 H 1.09006 * 109.75660 * 26.31702 * 17 16 15 36 36 H 1.08994 * 110.15485 * 265.17014 * 17 16 15 37 37 H 0.96697 * 113.99997 * 64.28586 * 20 18 17 38 38 H 1.09003 * 110.72354 * 219.68604 * 21 18 17 39 39 H 1.09000 * 110.72751 * 96.39851 * 21 18 17 40 40 H 1.09002 * 109.47153 * 177.69425 * 24 22 16 41 41 H 1.09001 * 109.46832 * 57.69616 * 24 22 16 42 42 H 1.09004 * 109.47261 * 297.69597 * 24 22 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2625 2.0719 -1.2687 5 6 3.6858 1.8350 -1.7037 6 1 4.3429 1.2309 -1.0957 7 6 4.1492 2.3897 -2.8779 8 7 3.3492 3.1259 -3.6179 9 14 5.9131 2.0956 -3.4175 10 1 6.6009 1.2405 -2.4169 11 1 5.9201 1.4165 -4.7380 12 1 6.6210 3.3966 -3.5261 13 6 2.2430 2.0165 1.1673 14 8 2.6476 3.1598 1.1673 15 6 1.9913 1.3063 2.4724 16 7 2.3091 2.2064 3.5889 17 6 1.6031 3.5005 3.4499 18 6 1.2496 3.9795 4.8700 19 1 0.1701 4.0883 4.9749 20 8 1.9037 5.2182 5.1528 21 6 1.7712 2.8701 5.8119 22 6 1.8509 1.6343 4.8809 23 1 0.8700 1.1718 4.7705 24 6 2.8665 0.6215 5.4134 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 -1.0276 -0.0005 28 1 1.8934 -0.5138 -0.8900 29 1 1.8933 -0.5139 0.8900 30 1 1.5817 1.6878 -2.0284 31 1 2.0955 3.1411 -1.1383 32 1 3.6752 3.5164 -4.4438 33 1 2.6212 0.4185 2.5302 34 1 0.9433 1.0124 2.5299 35 1 0.6923 3.3625 2.8671 36 1 2.2491 4.2302 2.9618 37 1 1.6163 5.9517 4.5920 38 1 1.0689 2.6943 6.6269 39 1 2.7575 3.1253 6.1995 40 1 2.5316 0.2449 6.3799 41 1 3.8363 1.1057 5.5284 42 1 2.9553 -0.2076 4.7113 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000340921310.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:54:08 Heat of formation + Delta-G solvation = -104.507882 kcal Electronic energy + Delta-G solvation = -21878.699749 eV Core-core repulsion = 18664.726878 eV Total energy + Delta-G solvation = -3213.972871 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 270.173 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.24651 -39.75504 -37.12146 -36.78984 -34.93962 -32.96870 -31.59603 -31.37541 -29.45720 -27.41391 -26.22868 -24.70699 -23.95808 -22.06646 -21.33440 -19.86765 -18.63158 -18.19639 -17.91726 -17.25432 -17.06858 -16.54802 -16.01783 -15.91526 -15.03314 -14.83925 -14.71927 -14.53504 -14.21138 -13.96048 -13.83357 -13.50139 -13.26632 -13.11512 -13.07712 -12.85261 -12.69373 -12.55432 -12.47097 -12.43743 -12.18274 -11.92732 -11.81213 -11.68665 -11.52275 -10.98963 -10.66277 -10.44591 -9.47835 -9.31953 -8.23928 -6.38478 1.34447 1.37388 1.49051 1.82837 2.23244 2.39991 2.95602 3.05580 3.24511 3.56150 3.68222 3.86420 4.07478 4.13662 4.18261 4.23539 4.38862 4.41960 4.47444 4.49430 4.61866 4.69190 4.84413 4.91553 4.96320 4.99534 5.02820 5.03922 5.15624 5.20038 5.21957 5.36045 5.43020 5.57285 5.82309 5.88715 6.03817 6.05938 6.69763 6.80773 6.80965 7.27841 7.50938 8.83209 Molecular weight = 270.17amu Principal moments of inertia in cm(-1) A = 0.020489 B = 0.004937 C = 0.004588 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1366.281368 B = 5669.577755 C = 6101.565156 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.099 3.901 3 N -0.604 5.604 4 C 0.265 3.735 5 C -0.541 4.541 6 H 0.051 0.949 7 C 0.008 3.992 8 N -0.929 5.929 9 Si 0.967 3.033 10 H -0.268 1.268 11 H -0.267 1.267 12 H -0.282 1.282 13 C 0.493 3.507 14 O -0.581 6.581 15 C 0.044 3.956 16 N -0.518 5.518 17 C 0.021 3.979 18 C 0.092 3.908 19 H 0.084 0.916 20 O -0.578 6.578 21 C -0.107 4.107 22 C 0.060 3.940 23 H 0.076 0.924 24 C -0.133 4.133 25 H 0.057 0.943 26 H 0.037 0.963 27 H 0.097 0.903 28 H 0.072 0.928 29 H 0.100 0.900 30 H 0.021 0.979 31 H -0.006 1.006 32 H 0.267 0.733 33 H 0.119 0.881 34 H 0.088 0.912 35 H 0.034 0.966 36 H 0.063 0.937 37 H 0.391 0.609 38 H 0.106 0.894 39 H 0.071 0.929 40 H 0.085 0.915 41 H 0.048 0.952 42 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.430 -8.034 17.671 21.163 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.024 4.024 3 N -0.336 5.336 4 C 0.143 3.857 5 C -0.579 4.579 6 H 0.069 0.931 7 C -0.191 4.191 8 N -0.569 5.569 9 Si 0.792 3.208 10 H -0.193 1.193 11 H -0.192 1.192 12 H -0.208 1.208 13 C 0.281 3.719 14 O -0.461 6.461 15 C -0.087 4.087 16 N -0.245 5.245 17 C -0.107 4.107 18 C 0.032 3.968 19 H 0.102 0.898 20 O -0.386 6.386 21 C -0.145 4.145 22 C -0.047 4.047 23 H 0.094 0.906 24 C -0.191 4.191 25 H 0.076 0.924 26 H 0.056 0.944 27 H 0.116 0.884 28 H 0.090 0.910 29 H 0.118 0.882 30 H 0.039 0.961 31 H 0.013 0.987 32 H 0.076 0.924 33 H 0.137 0.863 34 H 0.105 0.895 35 H 0.052 0.948 36 H 0.082 0.918 37 H 0.241 0.759 38 H 0.125 0.875 39 H 0.090 0.910 40 H 0.104 0.896 41 H 0.067 0.933 42 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -7.382 -7.656 17.921 20.839 hybrid contribution -0.175 0.673 -1.651 1.791 sum -7.557 -6.983 16.270 19.251 Atomic orbital electron populations 1.22143 0.94531 1.03555 1.01496 1.21757 0.95314 0.81366 1.03933 1.48287 1.64084 1.15135 1.06134 1.18662 0.95199 0.91399 0.80432 1.21734 0.97914 1.31885 1.06402 0.93089 1.25847 1.02352 0.94468 0.96435 1.70056 1.37677 1.34296 1.14847 0.85374 0.79055 0.77998 0.78417 1.19252 1.19216 1.20831 1.21190 0.77511 0.86736 0.86418 1.90632 1.47260 1.20488 1.87707 1.22234 1.02338 0.96559 0.87529 1.64540 1.55477 1.02697 1.01744 1.23521 0.96363 0.93411 0.97416 1.22854 0.96203 0.84995 0.92716 0.89844 1.86472 1.68647 1.20065 1.63413 1.22596 1.02917 0.91749 0.97255 1.22989 0.98508 0.95497 0.87720 0.90602 1.21687 0.98249 0.97579 1.01543 0.92365 0.94364 0.88445 0.90965 0.88233 0.96063 0.98745 0.92421 0.86316 0.89478 0.94797 0.91821 0.75947 0.87535 0.91011 0.89613 0.93329 0.92112 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.82 10.24 71.98 0.74 -3.08 16 2 C 0.10 2.97 5.93 86.38 0.51 3.48 16 3 N -0.60 -25.86 2.46 -826.14 -2.03 -27.89 16 4 C 0.26 14.54 5.16 85.63 0.44 14.98 16 5 C -0.54 -31.89 9.39 25.60 0.24 -31.65 16 6 H 0.05 3.00 7.81 -2.91 -0.02 2.98 16 7 C 0.01 0.46 5.46 84.66 0.46 0.92 16 8 N -0.93 -57.06 13.29 21.45 0.28 -56.77 16 9 Si 0.97 45.92 29.54 68.60 2.03 47.95 16 10 H -0.27 -12.41 7.11 99.48 0.71 -11.70 16 11 H -0.27 -11.91 7.11 99.48 0.71 -11.20 16 12 H -0.28 -13.33 7.11 99.48 0.71 -12.63 16 13 C 0.49 20.90 7.25 87.66 0.64 21.53 16 14 O -0.58 -30.68 13.39 -3.04 -0.04 -30.72 16 15 C 0.04 1.29 3.89 85.56 0.33 1.62 16 16 N -0.52 -15.49 4.96 -862.33 -4.27 -19.77 16 17 C 0.02 0.67 4.89 86.41 0.42 1.09 16 18 C 0.09 2.17 4.36 31.47 0.14 2.31 16 19 H 0.08 1.55 8.14 -2.39 -0.02 1.53 16 20 O -0.58 -15.01 13.25 -148.98 -1.97 -16.99 16 21 C -0.11 -2.16 6.24 31.80 0.20 -1.96 16 22 C 0.06 1.21 2.91 45.26 0.13 1.35 16 23 H 0.08 1.22 7.85 -2.39 -0.02 1.20 16 24 C -0.13 -2.29 9.49 71.98 0.68 -1.61 16 25 H 0.06 1.28 7.22 -2.39 -0.02 1.26 16 26 H 0.04 1.09 8.14 -2.39 -0.02 1.07 16 27 H 0.10 1.65 8.14 -2.39 -0.02 1.63 16 28 H 0.07 2.33 8.07 -2.39 -0.02 2.31 16 29 H 0.10 2.29 6.44 -2.39 -0.02 2.27 16 30 H 0.02 1.19 8.07 -2.38 -0.02 1.17 16 31 H -0.01 -0.35 7.42 -2.39 -0.02 -0.37 16 32 H 0.27 15.31 8.31 -92.71 -0.77 14.54 16 33 H 0.12 3.00 7.01 -2.39 -0.02 2.98 16 34 H 0.09 2.00 6.93 -2.39 -0.02 1.98 16 35 H 0.03 1.07 7.59 -2.38 -0.02 1.05 16 36 H 0.06 2.58 6.59 -2.39 -0.02 2.56 16 37 H 0.39 7.58 9.12 -74.06 -0.68 6.90 16 38 H 0.11 1.47 8.14 -2.39 -0.02 1.45 16 39 H 0.07 1.69 7.99 -2.39 -0.02 1.67 16 40 H 0.09 1.02 8.14 -2.39 -0.02 1.00 16 41 H 0.05 1.01 8.14 -2.39 -0.02 0.99 16 42 H 0.06 0.99 7.72 -2.38 -0.02 0.97 16 Total: -1.00 -78.82 336.40 -0.75 -79.57 By element: Atomic # 1 Polarization: 15.31 SS G_CDS: 0.32 Total: 15.63 kcal Atomic # 6 Polarization: 4.05 SS G_CDS: 4.93 Total: 8.99 kcal Atomic # 7 Polarization: -98.41 SS G_CDS: -6.02 Total: -104.43 kcal Atomic # 8 Polarization: -45.69 SS G_CDS: -2.01 Total: -47.70 kcal Atomic # 14 Polarization: 45.92 SS G_CDS: 2.03 Total: 47.95 kcal Total: -78.82 -0.75 -79.57 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000340921310.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.940 kcal (2) G-P(sol) polarization free energy of solvation -78.820 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.760 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.748 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.568 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.508 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds