Wall clock time and date at job start Mon Mar 30 2020 01:20:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.46499 * 119.99794 * 2 1 4 4 C 1.53001 * 109.47147 * 270.00071 * 3 2 1 5 5 C 1.52997 * 109.47318 * 179.97438 * 4 3 2 6 6 H 1.09006 * 109.86851 * 54.29906 * 5 4 3 7 7 C 1.54100 * 109.88166 * 175.30610 * 5 4 3 8 8 C 1.54810 * 104.18520 * 121.45728 * 7 5 4 9 9 C 1.54994 * 102.09262 * 20.88186 * 8 7 5 10 10 O 1.43740 * 109.88263 * 293.30030 * 5 4 3 11 11 C 1.34774 * 120.00244 * 180.02562 * 2 1 3 12 12 O 1.21579 * 120.00123 * 179.97438 * 11 2 1 13 13 N 1.34777 * 119.99898 * 359.97438 * 11 2 1 14 14 C 1.46496 * 120.00258 * 180.02562 * 13 11 2 15 15 C 1.53002 * 109.47421 * 180.02562 * 14 13 11 16 16 C 1.50706 * 109.46925 * 180.02562 * 15 14 13 17 17 H 1.07999 * 120.00196 * 0.02562 * 16 15 14 18 18 C 1.37879 * 119.99394 * 180.02562 * 16 15 14 19 19 N 1.31514 * 119.99350 * 180.02562 * 18 16 15 20 20 Si 1.86789 * 120.00458 * 359.97438 * 18 16 15 21 21 H 1.48506 * 109.47200 * 90.00092 * 20 18 16 22 22 H 1.48505 * 109.47499 * 210.00153 * 20 18 16 23 23 H 1.48500 * 109.47262 * 330.00415 * 20 18 16 24 24 H 1.09002 * 109.46944 * 269.99484 * 1 2 3 25 25 H 1.08996 * 109.47264 * 29.99932 * 1 2 3 26 26 H 1.09001 * 109.47272 * 150.00199 * 1 2 3 27 27 H 1.08998 * 109.47388 * 29.99897 * 3 2 1 28 28 H 1.08993 * 109.47115 * 150.00415 * 3 2 1 29 29 H 1.08994 * 109.47531 * 300.00328 * 4 3 2 30 30 H 1.09010 * 109.46985 * 60.00232 * 4 3 2 31 31 H 1.08997 * 110.48815 * 240.13461 * 7 5 4 32 32 H 1.08994 * 110.48785 * 2.64898 * 7 5 4 33 33 H 1.09002 * 110.90486 * 139.08234 * 8 7 5 34 34 H 1.09002 * 110.90826 * 262.64479 * 8 7 5 35 35 H 1.09002 * 110.61586 * 81.48170 * 9 8 7 36 36 H 1.09005 * 110.61191 * 204.31532 * 9 8 7 37 37 H 0.97008 * 120.00336 * 0.02562 * 13 11 2 38 38 H 1.09004 * 109.46875 * 60.00324 * 14 13 11 39 39 H 1.09004 * 109.47522 * 300.00473 * 14 13 11 40 40 H 1.09000 * 109.46497 * 60.00401 * 15 14 13 41 41 H 1.09000 * 109.47312 * 300.00180 * 15 14 13 42 42 H 0.97005 * 119.99656 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4525 1.7104 -1.4425 5 6 3.2168 3.0358 -1.4425 6 1 4.1230 2.9408 -0.8442 7 6 3.5815 3.4304 -2.8868 8 6 2.9151 4.8140 -3.0819 9 6 2.7243 5.2915 -1.6197 10 8 2.3856 4.0796 -0.9081 11 6 2.1390 -1.1672 -0.0005 12 8 3.3547 -1.1671 -0.0010 13 7 1.4651 -2.3344 -0.0005 14 6 2.1976 -3.6031 -0.0005 15 6 1.2033 -4.7660 -0.0012 16 6 1.9570 -6.0711 -0.0005 17 1 3.0369 -6.0711 0.0007 18 6 1.2675 -7.2652 -0.0015 19 7 1.9252 -8.4041 -0.0004 20 14 -0.6004 -7.2653 -0.0028 21 1 -1.0944 -7.2648 -1.4033 22 1 -1.0959 -8.4780 0.6964 23 1 -1.0960 -6.0530 0.6972 24 1 -0.3633 -0.0001 1.0277 25 1 -0.3633 0.8899 -0.5138 26 1 -0.3634 -0.8900 -0.5138 27 1 1.6084 2.0284 0.5138 28 1 3.1499 1.1384 0.5137 29 1 3.0415 0.9509 -1.9564 30 1 1.4999 1.8408 -1.9563 31 1 4.6629 3.5085 -2.9995 32 1 3.1765 2.7065 -3.5939 33 1 3.5732 5.4891 -3.6289 34 1 1.9547 4.7153 -3.5879 35 1 3.6496 5.7167 -1.2310 36 1 1.9133 6.0171 -1.5557 37 1 0.4950 -2.3345 -0.0005 38 1 2.8242 -3.6608 0.8895 39 1 2.8243 -3.6609 -0.8905 40 1 0.5771 -4.7081 -0.8914 41 1 0.5763 -4.7085 0.8886 42 1 1.4402 -9.2442 -0.0007 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000342165093.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:20:49 Heat of formation + Delta-G solvation = -84.403884 kcal Electronic energy + Delta-G solvation = -20643.297072 eV Core-core repulsion = 17430.195975 eV Total energy + Delta-G solvation = -3213.101096 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 270.173 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.05778 -39.51097 -35.91341 -34.85751 -33.08346 -32.53375 -32.11097 -29.98919 -28.07852 -26.46106 -24.88499 -23.35290 -22.02042 -21.13729 -20.76735 -19.57970 -17.80960 -16.90797 -16.65172 -16.35483 -15.84898 -15.68793 -15.32876 -14.29425 -14.00294 -13.93570 -13.87407 -13.80855 -13.12243 -13.04866 -12.83058 -12.63442 -12.43235 -12.19906 -12.02730 -11.59773 -11.43948 -11.30234 -11.16280 -11.06732 -10.82440 -10.35975 -10.21233 -9.96636 -9.93505 -9.67364 -9.29843 -8.73201 -8.59735 -8.25641 -6.08969 -4.08699 2.91329 3.26518 3.34102 3.35625 3.53342 3.58110 4.24550 4.29118 4.39569 4.44946 4.60062 4.74004 4.92104 4.99696 5.06834 5.15186 5.23987 5.28512 5.33837 5.40529 5.44381 5.48726 5.58003 5.61266 5.65115 5.79740 5.89851 6.11031 6.12772 6.28488 6.58340 6.61893 6.64628 6.86646 7.07589 7.27365 7.30268 7.70003 8.28143 8.47992 8.93727 8.96889 9.51274 11.04142 Molecular weight = 270.17amu Principal moments of inertia in cm(-1) A = 0.042215 B = 0.002935 C = 0.002870 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 663.113896 B = 9538.030170 C = 9752.808763 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.081 3.919 2 N -0.640 5.640 3 C 0.138 3.862 4 C -0.132 4.132 5 C 0.079 3.921 6 H 0.072 0.928 7 C -0.152 4.152 8 C -0.155 4.155 9 C 0.046 3.954 10 O -0.374 6.374 11 C 0.700 3.300 12 O -0.593 6.593 13 N -0.743 5.743 14 C 0.147 3.853 15 C -0.021 4.021 16 C -0.521 4.521 17 H 0.076 0.924 18 C 0.068 3.932 19 N -0.899 5.899 20 Si 0.883 3.117 21 H -0.277 1.277 22 H -0.287 1.287 23 H -0.266 1.266 24 H 0.053 0.947 25 H 0.071 0.929 26 H 0.067 0.933 27 H 0.078 0.922 28 H 0.082 0.918 29 H 0.081 0.919 30 H 0.068 0.932 31 H 0.076 0.924 32 H 0.079 0.921 33 H 0.078 0.922 34 H 0.076 0.924 35 H 0.059 0.941 36 H 0.090 0.910 37 H 0.391 0.609 38 H 0.060 0.940 39 H 0.059 0.941 40 H 0.016 0.984 41 H 0.021 0.979 42 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.201 27.423 -4.296 27.942 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 N -0.378 5.378 3 C 0.015 3.985 4 C -0.171 4.171 5 C 0.021 3.979 6 H 0.090 0.910 7 C -0.190 4.190 8 C -0.193 4.193 9 C -0.031 4.031 10 O -0.293 6.293 11 C 0.401 3.599 12 O -0.471 6.471 13 N -0.398 5.398 14 C 0.024 3.976 15 C -0.059 4.059 16 C -0.559 4.559 17 H 0.094 0.906 18 C -0.133 4.133 19 N -0.537 5.537 20 Si 0.710 3.290 21 H -0.203 1.203 22 H -0.213 1.213 23 H -0.191 1.191 24 H 0.072 0.928 25 H 0.090 0.910 26 H 0.085 0.915 27 H 0.097 0.903 28 H 0.100 0.900 29 H 0.099 0.901 30 H 0.087 0.913 31 H 0.094 0.906 32 H 0.098 0.902 33 H 0.097 0.903 34 H 0.094 0.906 35 H 0.077 0.923 36 H 0.109 0.891 37 H 0.226 0.774 38 H 0.078 0.922 39 H 0.078 0.922 40 H 0.035 0.965 41 H 0.039 0.961 42 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -2.474 27.143 -4.110 27.564 hybrid contribution -1.373 -0.148 -0.276 1.408 sum -3.846 26.995 -4.387 27.619 Atomic orbital electron populations 1.21683 0.80218 1.02787 1.01605 1.47074 1.06163 1.05169 1.79402 1.21218 0.97779 0.83417 0.96098 1.22180 1.01053 0.95110 0.98768 1.22728 0.93577 0.88128 0.93484 0.91024 1.23000 1.01520 0.97336 0.97134 1.23120 1.01691 0.96757 0.97736 1.23551 1.00758 0.88422 0.90371 1.88924 1.61845 1.17773 1.60785 1.15995 0.85439 0.80440 0.78023 1.90883 1.11605 1.86296 1.58354 1.45676 1.09828 1.05486 1.78772 1.21369 0.95064 0.79662 1.01456 1.19794 0.95494 0.93914 0.96724 1.20925 0.95294 0.88252 1.51473 0.90579 1.25003 0.98482 0.95430 0.94431 1.69909 1.35834 0.97451 1.50546 0.86744 0.86092 0.77720 0.78459 1.20261 1.21298 1.19090 0.92798 0.91049 0.91482 0.90321 0.89981 0.90087 0.91315 0.90553 0.90199 0.90337 0.90557 0.92257 0.89144 0.77417 0.92162 0.92226 0.96535 0.96063 0.92583 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.80 10.20 59.85 0.61 1.41 16 2 N -0.64 -8.71 2.87 -187.36 -0.54 -9.25 16 3 C 0.14 1.68 5.32 -4.04 -0.02 1.66 16 4 C -0.13 -1.44 5.03 -26.73 -0.13 -1.57 16 5 C 0.08 0.75 3.40 -26.16 -0.09 0.66 16 6 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 7 C -0.15 -1.17 6.64 -25.20 -0.17 -1.34 16 8 C -0.16 -0.99 7.16 -24.72 -0.18 -1.17 16 9 C 0.05 0.32 7.72 38.21 0.29 0.62 16 10 O -0.37 -3.76 10.84 -35.23 -0.38 -4.14 16 11 C 0.70 12.53 8.28 -86.92 -0.72 11.81 16 12 O -0.59 -12.83 15.92 5.30 0.08 -12.75 16 13 N -0.74 -13.13 5.42 -65.23 -0.35 -13.49 16 14 C 0.15 3.13 5.61 -4.04 -0.02 3.11 16 15 C -0.02 -0.50 4.16 -27.88 -0.12 -0.62 16 16 C -0.52 -14.77 9.66 -34.44 -0.33 -15.11 16 17 H 0.08 2.34 7.99 -52.49 -0.42 1.92 16 18 C 0.07 1.97 5.47 -17.82 -0.10 1.87 16 19 N -0.90 -27.55 13.96 55.43 0.77 -26.78 16 20 Si 0.88 21.19 27.47 -169.99 -4.67 16.52 16 21 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 22 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 23 H -0.27 -6.04 6.54 56.52 0.37 -5.67 16 24 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 25 H 0.07 0.57 8.07 -51.93 -0.42 0.15 16 26 H 0.07 0.64 6.36 -51.93 -0.33 0.31 16 27 H 0.08 0.85 7.82 -51.93 -0.41 0.44 16 28 H 0.08 1.14 7.42 -51.93 -0.39 0.75 16 29 H 0.08 1.02 8.14 -51.93 -0.42 0.59 16 30 H 0.07 0.71 8.14 -51.92 -0.42 0.29 16 31 H 0.08 0.53 8.14 -51.93 -0.42 0.10 16 32 H 0.08 0.62 7.70 -51.93 -0.40 0.22 16 33 H 0.08 0.39 8.14 -51.93 -0.42 -0.04 16 34 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 35 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 36 H 0.09 0.52 8.14 -51.93 -0.42 0.10 16 37 H 0.39 5.86 6.20 -40.82 -0.25 5.60 16 38 H 0.06 1.36 8.14 -51.93 -0.42 0.93 16 39 H 0.06 1.33 8.14 -51.93 -0.42 0.91 16 40 H 0.02 0.37 7.57 -51.93 -0.39 -0.02 16 41 H 0.02 0.49 7.20 -51.93 -0.37 0.11 16 42 H 0.26 7.55 8.31 -40.82 -0.34 7.21 16 LS Contribution 340.09 15.07 5.13 5.13 Total: -1.00 -33.59 340.09 -8.13 -41.72 By element: Atomic # 1 Polarization: 8.88 SS G_CDS: -7.20 Total: 1.69 kcal Atomic # 6 Polarization: 2.33 SS G_CDS: -0.97 Total: 1.36 kcal Atomic # 7 Polarization: -49.40 SS G_CDS: -0.12 Total: -49.52 kcal Atomic # 8 Polarization: -16.59 SS G_CDS: -0.30 Total: -16.89 kcal Atomic # 14 Polarization: 21.19 SS G_CDS: -4.67 Total: 16.52 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -33.59 -8.13 -41.72 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000342165093.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.684 kcal (2) G-P(sol) polarization free energy of solvation -33.591 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.275 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.129 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.720 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.404 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds