Wall clock time and date at job start Mon Mar 30 2020 01:20:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.46499 * 119.99794 * 2 1 4 4 C 1.53001 * 109.47147 * 270.00071 * 3 2 1 5 5 C 1.52997 * 109.47318 * 179.97438 * 4 3 2 6 6 H 1.09006 * 109.86851 * 54.29906 * 5 4 3 7 7 C 1.54100 * 109.88166 * 175.30610 * 5 4 3 8 8 C 1.54810 * 104.18520 * 121.45728 * 7 5 4 9 9 C 1.54994 * 102.09262 * 20.88186 * 8 7 5 10 10 O 1.43740 * 109.88263 * 293.30030 * 5 4 3 11 11 C 1.34774 * 120.00244 * 180.02562 * 2 1 3 12 12 O 1.21579 * 120.00123 * 179.97438 * 11 2 1 13 13 N 1.34777 * 119.99898 * 359.97438 * 11 2 1 14 14 C 1.46496 * 120.00258 * 180.02562 * 13 11 2 15 15 C 1.53002 * 109.47421 * 180.02562 * 14 13 11 16 16 C 1.50706 * 109.46925 * 180.02562 * 15 14 13 17 17 H 1.07999 * 120.00196 * 0.02562 * 16 15 14 18 18 C 1.37879 * 119.99394 * 180.02562 * 16 15 14 19 19 N 1.31514 * 119.99350 * 180.02562 * 18 16 15 20 20 Si 1.86789 * 120.00458 * 359.97438 * 18 16 15 21 21 H 1.48506 * 109.47200 * 90.00092 * 20 18 16 22 22 H 1.48505 * 109.47499 * 210.00153 * 20 18 16 23 23 H 1.48500 * 109.47262 * 330.00415 * 20 18 16 24 24 H 1.09002 * 109.46944 * 269.99484 * 1 2 3 25 25 H 1.08996 * 109.47264 * 29.99932 * 1 2 3 26 26 H 1.09001 * 109.47272 * 150.00199 * 1 2 3 27 27 H 1.08998 * 109.47388 * 29.99897 * 3 2 1 28 28 H 1.08993 * 109.47115 * 150.00415 * 3 2 1 29 29 H 1.08994 * 109.47531 * 300.00328 * 4 3 2 30 30 H 1.09010 * 109.46985 * 60.00232 * 4 3 2 31 31 H 1.08997 * 110.48815 * 240.13461 * 7 5 4 32 32 H 1.08994 * 110.48785 * 2.64898 * 7 5 4 33 33 H 1.09002 * 110.90486 * 139.08234 * 8 7 5 34 34 H 1.09002 * 110.90826 * 262.64479 * 8 7 5 35 35 H 1.09002 * 110.61586 * 81.48170 * 9 8 7 36 36 H 1.09005 * 110.61191 * 204.31532 * 9 8 7 37 37 H 0.97008 * 120.00336 * 0.02562 * 13 11 2 38 38 H 1.09004 * 109.46875 * 60.00324 * 14 13 11 39 39 H 1.09004 * 109.47522 * 300.00473 * 14 13 11 40 40 H 1.09000 * 109.46497 * 60.00401 * 15 14 13 41 41 H 1.09000 * 109.47312 * 300.00180 * 15 14 13 42 42 H 0.97005 * 119.99656 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4525 1.7104 -1.4425 5 6 3.2168 3.0358 -1.4425 6 1 4.1230 2.9408 -0.8442 7 6 3.5815 3.4304 -2.8868 8 6 2.9151 4.8140 -3.0819 9 6 2.7243 5.2915 -1.6197 10 8 2.3856 4.0796 -0.9081 11 6 2.1390 -1.1672 -0.0005 12 8 3.3547 -1.1671 -0.0010 13 7 1.4651 -2.3344 -0.0005 14 6 2.1976 -3.6031 -0.0005 15 6 1.2033 -4.7660 -0.0012 16 6 1.9570 -6.0711 -0.0005 17 1 3.0369 -6.0711 0.0007 18 6 1.2675 -7.2652 -0.0015 19 7 1.9252 -8.4041 -0.0004 20 14 -0.6004 -7.2653 -0.0028 21 1 -1.0944 -7.2648 -1.4033 22 1 -1.0959 -8.4780 0.6964 23 1 -1.0960 -6.0530 0.6972 24 1 -0.3633 -0.0001 1.0277 25 1 -0.3633 0.8899 -0.5138 26 1 -0.3634 -0.8900 -0.5138 27 1 1.6084 2.0284 0.5138 28 1 3.1499 1.1384 0.5137 29 1 3.0415 0.9509 -1.9564 30 1 1.4999 1.8408 -1.9563 31 1 4.6629 3.5085 -2.9995 32 1 3.1765 2.7065 -3.5939 33 1 3.5732 5.4891 -3.6289 34 1 1.9547 4.7153 -3.5879 35 1 3.6496 5.7167 -1.2310 36 1 1.9133 6.0171 -1.5557 37 1 0.4950 -2.3345 -0.0005 38 1 2.8242 -3.6608 0.8895 39 1 2.8243 -3.6609 -0.8905 40 1 0.5771 -4.7081 -0.8914 41 1 0.5763 -4.7085 0.8886 42 1 1.4402 -9.2442 -0.0007 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000342165093.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:20:48 Heat of formation + Delta-G solvation = -107.729076 kcal Electronic energy + Delta-G solvation = -20644.308528 eV Core-core repulsion = 17430.195975 eV Total energy + Delta-G solvation = -3214.112552 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 270.173 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.27393 -40.32393 -37.18851 -36.46386 -34.87099 -33.60819 -32.88771 -31.72988 -28.90635 -27.59762 -26.46190 -24.40044 -22.81618 -22.52715 -21.85516 -20.94967 -19.07204 -18.95295 -17.49449 -17.29420 -16.90487 -16.58789 -16.41621 -16.23441 -15.43572 -15.30567 -15.09775 -14.61004 -14.51004 -14.19649 -14.10008 -13.69246 -13.46125 -13.13568 -13.04561 -13.01477 -12.64127 -12.25639 -12.16948 -12.14547 -12.01126 -11.77980 -11.75028 -11.54874 -11.50805 -11.20185 -10.78140 -10.63304 -10.18468 -9.49129 -8.29295 -6.36647 1.39668 1.42701 1.54026 1.68053 2.12949 2.37825 2.94052 3.04115 3.05600 3.67126 3.75687 3.99519 4.04628 4.13131 4.25500 4.33313 4.35944 4.41657 4.44451 4.57105 4.62369 4.68925 4.75373 4.79723 4.84605 4.88608 4.95800 5.04066 5.06522 5.14495 5.18022 5.24513 5.41139 5.44380 5.56719 5.67447 5.93476 5.98050 6.23685 6.70265 6.99847 7.27679 7.56473 8.87571 Molecular weight = 270.17amu Principal moments of inertia in cm(-1) A = 0.042215 B = 0.002935 C = 0.002870 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 663.113896 B = 9538.030170 C = 9752.808763 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.073 3.927 2 N -0.631 5.631 3 C 0.138 3.862 4 C -0.123 4.123 5 C 0.080 3.920 6 H 0.064 0.936 7 C -0.153 4.153 8 C -0.149 4.149 9 C 0.039 3.961 10 O -0.392 6.392 11 C 0.694 3.306 12 O -0.639 6.639 13 N -0.733 5.733 14 C 0.164 3.836 15 C -0.010 4.010 16 C -0.539 4.539 17 H 0.028 0.972 18 C 0.003 3.997 19 N -0.951 5.951 20 Si 0.961 3.039 21 H -0.264 1.264 22 H -0.286 1.286 23 H -0.237 1.237 24 H 0.068 0.932 25 H 0.096 0.904 26 H 0.074 0.926 27 H 0.099 0.901 28 H 0.058 0.942 29 H 0.058 0.942 30 H 0.078 0.922 31 H 0.082 0.918 32 H 0.077 0.923 33 H 0.096 0.904 34 H 0.078 0.922 35 H 0.066 0.934 36 H 0.105 0.895 37 H 0.408 0.592 38 H 0.039 0.961 39 H 0.040 0.960 40 H 0.036 0.964 41 H 0.036 0.964 42 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.316 29.777 -4.732 30.805 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 N -0.368 5.368 3 C 0.015 3.985 4 C -0.161 4.161 5 C 0.021 3.979 6 H 0.082 0.918 7 C -0.191 4.191 8 C -0.187 4.187 9 C -0.037 4.037 10 O -0.312 6.312 11 C 0.396 3.604 12 O -0.521 6.521 13 N -0.389 5.389 14 C 0.039 3.961 15 C -0.048 4.048 16 C -0.577 4.577 17 H 0.047 0.953 18 C -0.194 4.194 19 N -0.591 5.591 20 Si 0.783 3.217 21 H -0.189 1.189 22 H -0.212 1.212 23 H -0.160 1.160 24 H 0.087 0.913 25 H 0.115 0.885 26 H 0.092 0.908 27 H 0.117 0.883 28 H 0.077 0.923 29 H 0.077 0.923 30 H 0.097 0.903 31 H 0.101 0.899 32 H 0.096 0.904 33 H 0.114 0.886 34 H 0.097 0.903 35 H 0.084 0.916 36 H 0.123 0.877 37 H 0.246 0.754 38 H 0.058 0.942 39 H 0.059 0.941 40 H 0.054 0.946 41 H 0.055 0.945 42 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -5.633 29.565 -4.548 30.438 hybrid contribution -0.305 -0.824 -0.129 0.888 sum -5.939 28.740 -4.677 29.718 Atomic orbital electron populations 1.21989 0.77392 1.04440 1.03115 1.47139 1.07900 1.03993 1.77768 1.21320 0.97048 0.83088 0.97029 1.22045 1.01278 0.95295 0.97523 1.22661 0.92968 0.87608 0.94631 0.91849 1.23011 1.02148 0.98236 0.95733 1.23116 1.02055 0.95999 0.97511 1.23771 1.01759 0.87683 0.90524 1.88888 1.62018 1.18722 1.61540 1.16178 0.84990 0.81419 0.77857 1.90853 1.13843 1.87080 1.60282 1.45297 1.10453 1.04242 1.78957 1.20879 0.94520 0.81017 0.99656 1.19634 0.95431 0.91725 0.98018 1.21242 0.93756 0.91162 1.51581 0.95340 1.26097 1.05052 0.94585 0.93649 1.70082 1.38568 0.98464 1.51966 0.85516 0.78021 0.78837 0.79361 1.18907 1.21243 1.15954 0.91306 0.88535 0.90768 0.88254 0.92330 0.92285 0.90342 0.89911 0.90439 0.88591 0.90300 0.91575 0.87650 0.75408 0.94213 0.94134 0.94607 0.94527 0.92317 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.19 10.20 127.77 1.30 2.49 16 2 N -0.63 -16.19 2.87 -864.93 -2.49 -18.68 16 3 C 0.14 3.24 5.32 86.38 0.46 3.70 16 4 C -0.12 -2.57 5.03 30.59 0.15 -2.42 16 5 C 0.08 1.45 3.40 30.97 0.11 1.56 16 6 H 0.06 1.24 8.14 -2.38 -0.02 1.22 16 7 C -0.15 -2.17 6.64 31.58 0.21 -1.96 16 8 C -0.15 -1.56 7.16 31.89 0.23 -1.33 16 9 C 0.04 0.46 7.72 72.66 0.56 1.03 16 10 O -0.39 -7.23 10.84 -148.98 -1.61 -8.84 16 11 C 0.69 24.60 8.28 179.06 1.48 26.08 16 12 O -0.64 -28.44 15.92 -3.96 -0.06 -28.51 16 13 N -0.73 -25.03 5.42 -478.54 -2.59 -27.63 16 14 C 0.16 7.03 5.61 86.38 0.48 7.52 16 15 C -0.01 -0.47 4.16 29.85 0.12 -0.34 16 16 C -0.54 -31.24 9.66 25.60 0.25 -30.99 16 17 H 0.03 1.85 7.99 -2.91 -0.02 1.83 16 18 C 0.00 0.18 5.47 84.66 0.46 0.65 16 19 N -0.95 -59.74 13.96 21.45 0.30 -59.44 16 20 Si 0.96 42.49 27.47 68.60 1.88 44.37 16 21 H -0.26 -11.13 7.11 99.48 0.71 -10.42 16 22 H -0.29 -12.59 7.11 99.48 0.71 -11.89 16 23 H -0.24 -9.28 6.54 99.48 0.65 -8.63 16 24 H 0.07 0.98 8.14 -2.39 -0.02 0.96 16 25 H 0.10 1.15 8.07 -2.39 -0.02 1.13 16 26 H 0.07 1.13 6.36 -2.39 -0.02 1.12 16 27 H 0.10 1.94 7.82 -2.39 -0.02 1.92 16 28 H 0.06 1.66 7.42 -2.39 -0.02 1.64 16 29 H 0.06 1.50 8.14 -2.39 -0.02 1.48 16 30 H 0.08 1.48 8.14 -2.38 -0.02 1.46 16 31 H 0.08 1.05 8.14 -2.39 -0.02 1.03 16 32 H 0.08 1.13 7.70 -2.39 -0.02 1.11 16 33 H 0.10 0.68 8.14 -2.39 -0.02 0.66 16 34 H 0.08 0.80 8.14 -2.39 -0.02 0.78 16 35 H 0.07 0.70 8.14 -2.39 -0.02 0.68 16 36 H 0.11 0.94 8.14 -2.38 -0.02 0.92 16 37 H 0.41 11.04 6.20 -92.70 -0.58 10.47 16 38 H 0.04 1.85 8.14 -2.38 -0.02 1.83 16 39 H 0.04 1.88 8.14 -2.39 -0.02 1.86 16 40 H 0.04 1.50 7.57 -2.39 -0.02 1.49 16 41 H 0.04 1.57 7.20 -2.39 -0.02 1.55 16 42 H 0.27 15.60 8.31 -92.70 -0.77 14.83 16 Total: -1.00 -75.34 340.09 1.61 -73.73 By element: Atomic # 1 Polarization: 18.65 SS G_CDS: 0.36 Total: 19.01 kcal Atomic # 6 Polarization: 0.16 SS G_CDS: 5.82 Total: 5.99 kcal Atomic # 7 Polarization: -100.97 SS G_CDS: -4.78 Total: -105.75 kcal Atomic # 8 Polarization: -35.67 SS G_CDS: -1.68 Total: -37.35 kcal Atomic # 14 Polarization: 42.49 SS G_CDS: 1.88 Total: 44.37 kcal Total: -75.34 1.61 -73.73 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000342165093.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.996 kcal (2) G-P(sol) polarization free energy of solvation -75.340 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.336 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.607 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.733 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.729 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds