Wall clock time and date at job start Mon Mar 30 2020 01:20:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.46507 * 119.99662 * 2 1 4 4 C 1.52999 * 109.46824 * 269.99602 * 3 2 1 5 5 C 1.53003 * 109.46987 * 179.97438 * 4 3 2 6 6 H 1.08991 * 110.33095 * 307.25050 * 5 4 3 7 7 C 1.54479 * 110.36897 * 184.99901 * 5 4 3 8 8 C 1.54512 * 104.06105 * 217.18936 * 7 5 4 9 9 C 1.54486 * 104.06320 * 0.02562 * 8 7 5 10 10 O 1.44425 * 110.36985 * 69.62000 * 5 4 3 11 11 C 1.34775 * 120.00462 * 179.97438 * 2 1 3 12 12 O 1.21583 * 120.00144 * 180.02562 * 11 2 1 13 13 N 1.34777 * 119.99585 * 0.02562 * 11 2 1 14 14 C 1.46499 * 119.99665 * 179.72218 * 13 11 2 15 15 C 1.53004 * 109.47198 * 180.27868 * 14 13 11 16 16 C 1.50700 * 109.47208 * 180.02562 * 15 14 13 17 17 H 1.08002 * 119.99770 * 359.97438 * 16 15 14 18 18 C 1.37876 * 119.99720 * 179.97438 * 16 15 14 19 19 N 1.31514 * 120.00513 * 0.02562 * 18 16 15 20 20 Si 1.86809 * 119.99651 * 179.97438 * 18 16 15 21 21 H 1.48491 * 109.47115 * 89.99974 * 20 18 16 22 22 H 1.48509 * 109.46780 * 210.00159 * 20 18 16 23 23 H 1.48497 * 109.46888 * 329.99916 * 20 18 16 24 24 H 1.08997 * 109.47504 * 270.00259 * 1 2 3 25 25 H 1.09002 * 109.47236 * 30.00645 * 1 2 3 26 26 H 1.09003 * 109.46685 * 150.00239 * 1 2 3 27 27 H 1.09000 * 109.46892 * 29.99368 * 3 2 1 28 28 H 1.08999 * 109.46909 * 150.00039 * 3 2 1 29 29 H 1.08994 * 109.47204 * 300.00045 * 4 3 2 30 30 H 1.08998 * 109.46876 * 59.99973 * 4 3 2 31 31 H 1.08994 * 110.51339 * 335.83532 * 7 5 4 32 32 H 1.08999 * 110.50851 * 98.41258 * 7 5 4 33 33 H 1.09001 * 110.50919 * 118.64418 * 8 7 5 34 34 H 1.08996 * 110.51331 * 241.21897 * 8 7 5 35 35 H 1.08999 * 110.37211 * 142.80811 * 9 8 7 36 36 H 1.08997 * 110.37063 * 265.14438 * 9 8 7 37 37 H 0.97001 * 120.00485 * 0.02562 * 13 11 2 38 38 H 1.09009 * 109.47454 * 300.27637 * 14 13 11 39 39 H 1.08998 * 109.47492 * 60.27932 * 14 13 11 40 40 H 1.08995 * 109.46638 * 300.00121 * 15 14 13 41 41 H 1.09006 * 109.47139 * 60.00254 * 15 14 13 42 42 H 0.96999 * 120.00239 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1974 1.2688 0.0000 4 6 2.4524 1.7104 -1.4425 5 6 3.2168 3.0358 -1.4426 6 1 2.7012 3.7704 -0.8241 7 6 3.3764 3.5644 -2.8853 8 6 4.7875 4.1936 -2.9006 9 6 5.3138 3.9701 -1.4655 10 8 4.5673 2.8373 -0.9708 11 6 2.1389 -1.1671 0.0005 12 8 3.3548 -1.1671 0.0010 13 7 1.4650 -2.3343 0.0005 14 6 2.1976 -3.6030 -0.0051 15 6 1.2034 -4.7660 -0.0108 16 6 1.9570 -6.0711 -0.0160 17 1 3.0370 -6.0710 -0.0156 18 6 1.2676 -7.2651 -0.0211 19 7 -0.0475 -7.2652 -0.0221 20 14 2.2018 -8.8828 -0.0282 21 1 2.4494 -9.3175 1.3699 22 1 1.3992 -9.9148 -0.7328 23 1 3.4993 -8.7021 -0.7275 24 1 -0.3634 0.0000 1.0276 25 1 -0.3634 0.8899 -0.5139 26 1 -0.3633 -0.8900 -0.5138 27 1 1.6082 2.0284 0.5137 28 1 3.1498 1.1385 0.5138 29 1 3.0415 0.9508 -1.9563 30 1 1.5000 1.8406 -1.9563 31 1 3.3158 2.7449 -3.6012 32 1 2.6181 4.3168 -3.1024 33 1 5.4246 3.6850 -3.6242 34 1 4.7286 5.2582 -3.1269 35 1 6.3800 3.7440 -1.4832 36 1 5.1216 4.8487 -0.8497 37 1 0.4950 -2.3344 -0.0002 38 1 2.8247 -3.6567 -0.8951 39 1 2.8239 -3.6649 0.8849 40 1 0.5765 -4.7124 0.8791 41 1 0.5771 -4.7042 -0.9009 42 1 -0.5325 -8.1053 -0.0253 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000342165096.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:20:50 Heat of formation + Delta-G solvation = -87.630215 kcal Electronic energy + Delta-G solvation = -20634.391915 eV Core-core repulsion = 17421.150914 eV Total energy + Delta-G solvation = -3213.241000 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 270.173 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -39.94600 -39.40052 -35.83116 -34.70999 -33.06698 -32.46161 -32.05146 -29.50854 -27.97404 -26.36405 -24.77935 -23.37972 -21.85712 -21.13583 -20.88447 -19.48750 -17.69746 -16.70258 -16.42634 -16.19349 -15.76632 -15.58440 -15.22532 -14.49060 -13.99774 -13.85276 -13.78872 -13.68348 -13.03651 -12.93459 -12.65630 -12.41376 -12.25124 -12.06630 -11.89939 -11.59045 -11.24296 -11.11366 -10.99768 -10.90166 -10.82394 -10.59389 -10.26498 -9.94076 -9.79271 -9.48609 -9.21408 -8.63562 -8.42219 -8.12350 -6.06011 -4.08296 2.99704 3.32286 3.38127 3.43117 3.65309 3.69803 4.31916 4.37595 4.46397 4.53281 4.65985 4.80531 4.94358 5.06974 5.08889 5.20263 5.28781 5.31115 5.34854 5.44073 5.52410 5.54318 5.60476 5.66609 5.71008 5.80178 5.99562 6.17668 6.34784 6.46248 6.69248 6.72096 6.83375 7.08756 7.24660 7.60452 7.67778 7.93610 8.29889 8.45797 8.96946 9.08297 9.56268 11.05755 Molecular weight = 270.17amu Principal moments of inertia in cm(-1) A = 0.033741 B = 0.002950 C = 0.002817 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 829.661406 B = 9488.198277 C = 9938.864697 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.080 3.920 2 N -0.641 5.641 3 C 0.138 3.862 4 C -0.130 4.130 5 C 0.078 3.922 6 H 0.068 0.932 7 C -0.151 4.151 8 C -0.156 4.156 9 C 0.043 3.957 10 O -0.363 6.363 11 C 0.698 3.302 12 O -0.591 6.591 13 N -0.739 5.739 14 C 0.139 3.861 15 C 0.013 3.987 16 C -0.519 4.519 17 H 0.060 0.940 18 C 0.058 3.942 19 N -0.896 5.896 20 Si 0.897 3.103 21 H -0.280 1.280 22 H -0.286 1.286 23 H -0.272 1.272 24 H 0.053 0.947 25 H 0.068 0.932 26 H 0.069 0.931 27 H 0.069 0.931 28 H 0.090 0.910 29 H 0.079 0.921 30 H 0.074 0.926 31 H 0.077 0.923 32 H 0.075 0.925 33 H 0.074 0.926 34 H 0.074 0.926 35 H 0.090 0.910 36 H 0.057 0.943 37 H 0.392 0.608 38 H 0.053 0.947 39 H 0.053 0.947 40 H 0.022 0.978 41 H 0.021 0.979 42 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.334 24.695 -3.834 25.026 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 N -0.380 5.380 3 C 0.014 3.986 4 C -0.169 4.169 5 C 0.019 3.981 6 H 0.086 0.914 7 C -0.189 4.189 8 C -0.194 4.194 9 C -0.034 4.034 10 O -0.282 6.282 11 C 0.399 3.601 12 O -0.469 6.469 13 N -0.394 5.394 14 C 0.016 3.984 15 C -0.024 4.024 16 C -0.558 4.558 17 H 0.078 0.922 18 C -0.143 4.143 19 N -0.535 5.535 20 Si 0.725 3.275 21 H -0.206 1.206 22 H -0.212 1.212 23 H -0.197 1.197 24 H 0.072 0.928 25 H 0.087 0.913 26 H 0.087 0.913 27 H 0.088 0.912 28 H 0.108 0.892 29 H 0.097 0.903 30 H 0.092 0.908 31 H 0.096 0.904 32 H 0.094 0.906 33 H 0.093 0.907 34 H 0.093 0.907 35 H 0.108 0.892 36 H 0.075 0.925 37 H 0.227 0.773 38 H 0.071 0.929 39 H 0.072 0.928 40 H 0.040 0.960 41 H 0.040 0.960 42 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 2.162 24.343 -3.696 24.717 hybrid contribution -0.288 -0.692 -0.215 0.780 sum 1.875 23.651 -3.911 24.045 Atomic orbital electron populations 1.21685 0.80270 1.02795 1.01588 1.47065 1.06049 1.05194 1.79656 1.21212 0.97894 0.83495 0.95985 1.22061 0.99784 0.96151 0.98889 1.22956 0.84660 0.96918 0.93517 0.91387 1.22990 0.97073 1.01012 0.97820 1.22938 0.96795 1.01372 0.98277 1.23380 0.97354 0.89659 0.93013 1.89256 1.20070 1.43658 1.75220 1.16035 0.85472 0.80474 0.78111 1.90899 1.11589 1.86231 1.58165 1.45681 1.09903 1.05351 1.78507 1.21582 0.95644 0.80531 1.00621 1.19319 0.94258 0.91119 0.97718 1.21066 0.93296 0.90372 1.51068 0.92204 1.24996 0.94892 0.99391 0.95050 1.69957 1.06092 1.26804 1.50602 0.86510 0.79858 0.82998 0.78184 1.20571 1.21206 1.19704 0.92823 0.91275 0.91275 0.91226 0.89195 0.90253 0.90772 0.90438 0.90633 0.90681 0.90730 0.89163 0.92482 0.77292 0.92857 0.92813 0.96017 0.96046 0.92898 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.82 10.20 59.84 0.61 1.43 16 2 N -0.64 -9.12 2.87 -187.35 -0.54 -9.66 16 3 C 0.14 1.73 5.34 -4.04 -0.02 1.70 16 4 C -0.13 -1.46 5.16 -26.73 -0.14 -1.60 16 5 C 0.08 0.76 3.25 -25.95 -0.08 0.68 16 6 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 7 C -0.15 -1.21 6.63 -25.16 -0.17 -1.37 16 8 C -0.16 -1.15 7.09 -25.16 -0.18 -1.33 16 9 C 0.04 0.38 7.63 37.94 0.29 0.66 16 10 O -0.36 -4.55 11.13 -35.23 -0.39 -4.94 16 11 C 0.70 13.27 8.28 -86.92 -0.72 12.55 16 12 O -0.59 -13.61 15.92 5.29 0.08 -13.53 16 13 N -0.74 -14.03 5.42 -65.22 -0.35 -14.38 16 14 C 0.14 3.13 5.61 -4.04 -0.02 3.11 16 15 C 0.01 0.34 5.09 -27.88 -0.14 0.20 16 16 C -0.52 -14.70 9.11 -34.44 -0.31 -15.02 16 17 H 0.06 1.67 7.74 -52.49 -0.41 1.26 16 18 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 19 N -0.90 -26.45 13.29 55.43 0.74 -25.72 16 20 Si 0.90 21.68 29.54 -169.99 -5.02 16.66 16 21 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 22 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 23 H -0.27 -6.49 7.11 56.52 0.40 -6.09 16 24 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 25 H 0.07 0.53 8.07 -51.93 -0.42 0.11 16 26 H 0.07 0.71 6.36 -51.93 -0.33 0.38 16 27 H 0.07 0.66 8.07 -51.93 -0.42 0.24 16 28 H 0.09 1.40 7.29 -51.93 -0.38 1.02 16 29 H 0.08 1.15 8.14 -51.93 -0.42 0.73 16 30 H 0.07 0.69 8.14 -51.93 -0.42 0.26 16 31 H 0.08 0.67 7.87 -51.93 -0.41 0.26 16 32 H 0.07 0.47 8.14 -51.93 -0.42 0.04 16 33 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 34 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 35 H 0.09 0.72 8.14 -51.93 -0.42 0.30 16 36 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 37 H 0.39 6.47 6.20 -40.82 -0.25 6.21 16 38 H 0.05 1.25 8.14 -51.92 -0.42 0.83 16 39 H 0.05 1.26 8.14 -51.93 -0.42 0.84 16 40 H 0.02 0.57 8.14 -51.93 -0.42 0.15 16 41 H 0.02 0.56 8.14 -51.93 -0.42 0.14 16 42 H 0.26 7.28 8.31 -40.82 -0.34 6.94 16 LS Contribution 344.11 15.07 5.19 5.19 Total: -1.00 -34.01 344.11 -8.53 -42.54 By element: Atomic # 1 Polarization: 8.50 SS G_CDS: -7.25 Total: 1.25 kcal Atomic # 6 Polarization: 3.57 SS G_CDS: -0.98 Total: 2.58 kcal Atomic # 7 Polarization: -49.60 SS G_CDS: -0.16 Total: -49.75 kcal Atomic # 8 Polarization: -18.16 SS G_CDS: -0.31 Total: -18.47 kcal Atomic # 14 Polarization: 21.68 SS G_CDS: -5.02 Total: 16.66 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -34.01 -8.53 -42.54 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000342165096.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.092 kcal (2) G-P(sol) polarization free energy of solvation -34.009 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.101 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.529 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.539 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.630 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds