Wall clock time and date at job start Mon Mar 30 2020 01:20:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.46507 * 119.99662 * 2 1 4 4 C 1.52999 * 109.46824 * 269.99602 * 3 2 1 5 5 C 1.53003 * 109.46987 * 179.97438 * 4 3 2 6 6 H 1.08991 * 110.33095 * 307.25050 * 5 4 3 7 7 C 1.54479 * 110.36897 * 184.99901 * 5 4 3 8 8 C 1.54512 * 104.06105 * 217.18936 * 7 5 4 9 9 C 1.54486 * 104.06320 * 0.02562 * 8 7 5 10 10 O 1.44425 * 110.36985 * 69.62000 * 5 4 3 11 11 C 1.34775 * 120.00462 * 179.97438 * 2 1 3 12 12 O 1.21583 * 120.00144 * 180.02562 * 11 2 1 13 13 N 1.34777 * 119.99585 * 0.02562 * 11 2 1 14 14 C 1.46499 * 119.99665 * 179.72218 * 13 11 2 15 15 C 1.53004 * 109.47198 * 180.27868 * 14 13 11 16 16 C 1.50700 * 109.47208 * 180.02562 * 15 14 13 17 17 H 1.08002 * 119.99770 * 359.97438 * 16 15 14 18 18 C 1.37876 * 119.99720 * 179.97438 * 16 15 14 19 19 N 1.31514 * 120.00513 * 0.02562 * 18 16 15 20 20 Si 1.86809 * 119.99651 * 179.97438 * 18 16 15 21 21 H 1.48491 * 109.47115 * 89.99974 * 20 18 16 22 22 H 1.48509 * 109.46780 * 210.00159 * 20 18 16 23 23 H 1.48497 * 109.46888 * 329.99916 * 20 18 16 24 24 H 1.08997 * 109.47504 * 270.00259 * 1 2 3 25 25 H 1.09002 * 109.47236 * 30.00645 * 1 2 3 26 26 H 1.09003 * 109.46685 * 150.00239 * 1 2 3 27 27 H 1.09000 * 109.46892 * 29.99368 * 3 2 1 28 28 H 1.08999 * 109.46909 * 150.00039 * 3 2 1 29 29 H 1.08994 * 109.47204 * 300.00045 * 4 3 2 30 30 H 1.08998 * 109.46876 * 59.99973 * 4 3 2 31 31 H 1.08994 * 110.51339 * 335.83532 * 7 5 4 32 32 H 1.08999 * 110.50851 * 98.41258 * 7 5 4 33 33 H 1.09001 * 110.50919 * 118.64418 * 8 7 5 34 34 H 1.08996 * 110.51331 * 241.21897 * 8 7 5 35 35 H 1.08999 * 110.37211 * 142.80811 * 9 8 7 36 36 H 1.08997 * 110.37063 * 265.14438 * 9 8 7 37 37 H 0.97001 * 120.00485 * 0.02562 * 13 11 2 38 38 H 1.09009 * 109.47454 * 300.27637 * 14 13 11 39 39 H 1.08998 * 109.47492 * 60.27932 * 14 13 11 40 40 H 1.08995 * 109.46638 * 300.00121 * 15 14 13 41 41 H 1.09006 * 109.47139 * 60.00254 * 15 14 13 42 42 H 0.96999 * 120.00239 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1974 1.2688 0.0000 4 6 2.4524 1.7104 -1.4425 5 6 3.2168 3.0358 -1.4426 6 1 2.7012 3.7704 -0.8241 7 6 3.3764 3.5644 -2.8853 8 6 4.7875 4.1936 -2.9006 9 6 5.3138 3.9701 -1.4655 10 8 4.5673 2.8373 -0.9708 11 6 2.1389 -1.1671 0.0005 12 8 3.3548 -1.1671 0.0010 13 7 1.4650 -2.3343 0.0005 14 6 2.1976 -3.6030 -0.0051 15 6 1.2034 -4.7660 -0.0108 16 6 1.9570 -6.0711 -0.0160 17 1 3.0370 -6.0710 -0.0156 18 6 1.2676 -7.2651 -0.0211 19 7 -0.0475 -7.2652 -0.0221 20 14 2.2018 -8.8828 -0.0282 21 1 2.4494 -9.3175 1.3699 22 1 1.3992 -9.9148 -0.7328 23 1 3.4993 -8.7021 -0.7275 24 1 -0.3634 0.0000 1.0276 25 1 -0.3634 0.8899 -0.5139 26 1 -0.3633 -0.8900 -0.5138 27 1 1.6082 2.0284 0.5137 28 1 3.1498 1.1385 0.5138 29 1 3.0415 0.9508 -1.9563 30 1 1.5000 1.8406 -1.9563 31 1 3.3158 2.7449 -3.6012 32 1 2.6181 4.3168 -3.1024 33 1 5.4246 3.6850 -3.6242 34 1 4.7286 5.2582 -3.1269 35 1 6.3800 3.7440 -1.4832 36 1 5.1216 4.8487 -0.8497 37 1 0.4950 -2.3344 -0.0002 38 1 2.8247 -3.6567 -0.8951 39 1 2.8239 -3.6649 0.8849 40 1 0.5765 -4.7124 0.8791 41 1 0.5771 -4.7042 -0.9009 42 1 -0.5325 -8.1053 -0.0253 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000342165096.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:20:50 Heat of formation + Delta-G solvation = -110.844181 kcal Electronic energy + Delta-G solvation = -20635.398548 eV Core-core repulsion = 17421.150914 eV Total energy + Delta-G solvation = -3214.247634 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 270.173 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.24156 -40.28969 -37.16783 -36.43986 -34.90619 -33.55435 -32.85706 -31.32896 -28.86331 -27.52540 -26.48938 -24.51981 -22.95914 -22.47562 -21.85651 -20.93385 -19.03722 -18.48314 -17.53725 -17.26173 -16.89073 -16.56642 -16.46304 -16.40403 -15.35907 -15.25997 -15.03937 -14.58825 -14.27524 -14.16725 -14.10123 -13.65792 -13.39325 -13.05628 -12.94381 -12.88019 -12.60327 -12.52368 -12.28649 -12.25180 -11.98039 -11.76482 -11.66243 -11.49655 -11.46292 -11.13064 -10.68362 -10.60533 -10.15333 -9.47093 -8.24256 -6.34590 1.41680 1.42558 1.53948 1.71552 2.14979 2.41023 3.01003 3.08418 3.10345 3.70067 3.76725 4.04024 4.07108 4.13877 4.25304 4.37124 4.40581 4.46310 4.49857 4.54430 4.68158 4.68894 4.78129 4.84602 4.85446 4.90169 4.97063 5.04726 5.07794 5.17662 5.25964 5.30924 5.51157 5.58115 5.62161 5.78694 5.94203 6.01993 6.16998 6.77967 7.01385 7.34600 7.58595 8.87797 Molecular weight = 270.17amu Principal moments of inertia in cm(-1) A = 0.033741 B = 0.002950 C = 0.002817 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 829.661406 B = 9488.198277 C = 9938.864697 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.072 3.928 2 N -0.632 5.632 3 C 0.136 3.864 4 C -0.122 4.122 5 C 0.074 3.926 6 H 0.093 0.907 7 C -0.149 4.149 8 C -0.153 4.153 9 C 0.035 3.965 10 O -0.406 6.406 11 C 0.692 3.308 12 O -0.639 6.639 13 N -0.734 5.734 14 C 0.160 3.840 15 C 0.026 3.974 16 C -0.548 4.548 17 H 0.057 0.943 18 C 0.008 3.992 19 N -0.926 5.926 20 Si 0.966 3.034 21 H -0.272 1.272 22 H -0.278 1.278 23 H -0.267 1.267 24 H 0.068 0.932 25 H 0.106 0.894 26 H 0.066 0.934 27 H 0.111 0.889 28 H 0.052 0.948 29 H 0.036 0.964 30 H 0.101 0.899 31 H 0.064 0.936 32 H 0.102 0.898 33 H 0.068 0.932 34 H 0.099 0.901 35 H 0.088 0.912 36 H 0.075 0.925 37 H 0.406 0.594 38 H 0.040 0.960 39 H 0.041 0.959 40 H 0.009 0.991 41 H 0.009 0.991 42 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.296 26.272 -4.116 26.594 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 N -0.369 5.369 3 C 0.013 3.987 4 C -0.161 4.161 5 C 0.017 3.983 6 H 0.111 0.889 7 C -0.187 4.187 8 C -0.191 4.191 9 C -0.041 4.041 10 O -0.326 6.326 11 C 0.393 3.607 12 O -0.521 6.521 13 N -0.390 5.390 14 C 0.035 3.965 15 C -0.011 4.011 16 C -0.586 4.586 17 H 0.076 0.924 18 C -0.191 4.191 19 N -0.566 5.566 20 Si 0.790 3.210 21 H -0.197 1.197 22 H -0.203 1.203 23 H -0.192 1.192 24 H 0.086 0.914 25 H 0.124 0.876 26 H 0.085 0.915 27 H 0.129 0.871 28 H 0.071 0.929 29 H 0.055 0.945 30 H 0.119 0.881 31 H 0.083 0.917 32 H 0.120 0.880 33 H 0.087 0.913 34 H 0.117 0.883 35 H 0.106 0.894 36 H 0.093 0.907 37 H 0.243 0.757 38 H 0.058 0.942 39 H 0.059 0.941 40 H 0.027 0.973 41 H 0.027 0.973 42 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 1.072 25.973 -3.981 26.298 hybrid contribution -0.001 -1.103 -0.114 1.109 sum 1.071 24.869 -4.094 25.227 Atomic orbital electron populations 1.22006 0.77270 1.04570 1.03120 1.47142 1.07876 1.04002 1.77847 1.21382 0.96887 0.83421 0.97029 1.21993 1.00594 0.95919 0.97577 1.23122 0.83700 0.96400 0.95123 0.88929 1.23002 0.98198 1.01270 0.96233 1.22946 0.96214 1.02788 0.97122 1.23585 0.97128 0.89257 0.94180 1.89223 1.21732 1.45565 1.76041 1.16239 0.85005 0.81534 0.77912 1.90864 1.13893 1.87082 1.60241 1.45372 1.10397 1.04440 1.78826 1.21068 0.94711 0.81360 0.99341 1.19108 0.94134 0.91534 0.96337 1.21456 0.93562 0.91935 1.51646 0.92449 1.25866 0.95828 1.03055 0.94341 1.70053 1.07499 1.28036 1.50964 0.85435 0.78601 0.78393 0.78557 1.19709 1.20323 1.19179 0.91369 0.87564 0.91502 0.87065 0.92905 0.94483 0.88106 0.91703 0.87995 0.91335 0.88263 0.89350 0.90700 0.75708 0.94177 0.94098 0.97265 0.97256 0.92476 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.27 10.20 127.77 1.30 2.57 16 2 N -0.63 -17.32 2.87 -864.91 -2.49 -19.80 16 3 C 0.14 3.25 5.34 86.38 0.46 3.71 16 4 C -0.12 -2.63 5.16 30.60 0.16 -2.47 16 5 C 0.07 1.34 3.25 31.10 0.10 1.44 16 6 H 0.09 1.21 8.14 -2.39 -0.02 1.19 16 7 C -0.15 -2.09 6.63 31.61 0.21 -1.88 16 8 C -0.15 -2.00 7.09 31.61 0.22 -1.77 16 9 C 0.03 0.58 7.63 72.49 0.55 1.13 16 10 O -0.41 -10.21 11.13 -148.98 -1.66 -11.87 16 11 C 0.69 26.77 8.28 179.05 1.48 28.25 16 12 O -0.64 -30.77 15.92 -3.98 -0.06 -30.83 16 13 N -0.73 -28.24 5.42 -478.53 -2.59 -30.84 16 14 C 0.16 7.42 5.61 86.38 0.48 7.90 16 15 C 0.03 1.38 5.09 29.85 0.15 1.53 16 16 C -0.55 -31.47 9.11 25.60 0.23 -31.24 16 17 H 0.06 3.25 7.74 -2.91 -0.02 3.22 16 18 C 0.01 0.45 5.46 84.65 0.46 0.91 16 19 N -0.93 -54.84 13.29 21.45 0.28 -54.56 16 20 Si 0.97 44.37 29.54 68.60 2.03 46.39 16 21 H -0.27 -12.08 7.11 99.48 0.71 -11.38 16 22 H -0.28 -12.32 7.11 99.48 0.71 -11.62 16 23 H -0.27 -11.98 7.11 99.48 0.71 -11.27 16 24 H 0.07 1.06 8.14 -2.39 -0.02 1.04 16 25 H 0.11 1.13 8.07 -2.39 -0.02 1.11 16 26 H 0.07 1.23 6.36 -2.39 -0.02 1.22 16 27 H 0.11 1.75 8.07 -2.39 -0.02 1.73 16 28 H 0.05 1.69 7.29 -2.39 -0.02 1.67 16 29 H 0.04 1.11 8.14 -2.39 -0.02 1.09 16 30 H 0.10 1.59 8.14 -2.39 -0.02 1.57 16 31 H 0.06 1.06 7.87 -2.39 -0.02 1.04 16 32 H 0.10 0.89 8.14 -2.39 -0.02 0.87 16 33 H 0.07 0.97 8.14 -2.39 -0.02 0.95 16 34 H 0.10 0.81 8.14 -2.39 -0.02 0.79 16 35 H 0.09 1.42 8.14 -2.39 -0.02 1.40 16 36 H 0.07 0.95 8.14 -2.39 -0.02 0.93 16 37 H 0.41 13.28 6.20 -92.71 -0.58 12.70 16 38 H 0.04 1.95 8.14 -2.38 -0.02 1.93 16 39 H 0.04 1.99 8.14 -2.39 -0.02 1.97 16 40 H 0.01 0.49 8.14 -2.39 -0.02 0.47 16 41 H 0.01 0.49 8.14 -2.38 -0.02 0.47 16 42 H 0.27 14.77 8.31 -92.71 -0.77 14.00 16 Total: -1.00 -76.04 344.11 1.75 -74.30 By element: Atomic # 1 Polarization: 16.70 SS G_CDS: 0.41 Total: 17.11 kcal Atomic # 6 Polarization: 4.28 SS G_CDS: 5.83 Total: 10.10 kcal Atomic # 7 Polarization: -100.40 SS G_CDS: -4.79 Total: -105.20 kcal Atomic # 8 Polarization: -40.98 SS G_CDS: -1.72 Total: -42.70 kcal Atomic # 14 Polarization: 44.37 SS G_CDS: 2.03 Total: 46.39 kcal Total: -76.04 1.75 -74.30 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000342165096.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.549 kcal (2) G-P(sol) polarization free energy of solvation -76.041 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.590 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.746 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.295 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.844 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds