Wall clock time and date at job start Mon Mar 30 2020 01:20:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.46501 * 120.00098 * 2 1 4 4 C 1.52995 * 109.46937 * 90.00021 * 3 2 1 5 5 O 1.42909 * 110.01753 * 64.30116 * 4 3 2 6 6 C 1.54268 * 110.03638 * 302.91136 * 4 3 2 7 7 C 1.54964 * 104.15932 * 217.13729 * 6 4 3 8 8 C 1.54893 * 102.77818 * 37.88374 * 7 6 4 9 9 C 1.53878 * 110.03169 * 185.68702 * 4 3 2 10 10 C 1.34771 * 119.99594 * 180.02562 * 2 1 3 11 11 O 1.21593 * 120.00167 * 179.97438 * 10 2 1 12 12 N 1.34780 * 120.00532 * 359.97438 * 10 2 1 13 13 C 1.46496 * 120.00367 * 179.97438 * 12 10 2 14 14 C 1.52993 * 109.47399 * 180.02562 * 13 12 10 15 15 C 1.50700 * 109.47458 * 180.02562 * 14 13 12 16 16 H 1.08002 * 120.00079 * 0.02562 * 15 14 13 17 17 C 1.37880 * 120.00195 * 179.97438 * 15 14 13 18 18 N 1.31514 * 119.99793 * 0.02562 * 17 15 14 19 19 Si 1.86800 * 120.00027 * 179.97438 * 17 15 14 20 20 H 1.48496 * 109.46989 * 90.00259 * 19 17 15 21 21 H 1.48503 * 109.46975 * 210.00419 * 19 17 15 22 22 H 1.48504 * 109.46986 * 330.00098 * 19 17 15 23 23 H 1.09001 * 109.47060 * 270.00243 * 1 2 3 24 24 H 1.09004 * 109.47073 * 29.99732 * 1 2 3 25 25 H 1.09000 * 109.47212 * 149.99814 * 1 2 3 26 26 H 1.09000 * 109.46877 * 210.00112 * 3 2 1 27 27 H 1.09000 * 109.47251 * 330.00217 * 3 2 1 28 28 H 0.96704 * 113.99350 * 300.69990 * 5 4 3 29 29 H 1.09006 * 110.48147 * 335.78074 * 6 4 3 30 30 H 1.08992 * 110.48894 * 98.42598 * 6 4 3 31 31 H 1.09003 * 110.72127 * 279.57257 * 7 6 4 32 32 H 1.09001 * 110.76413 * 156.21708 * 7 6 4 33 33 H 1.09003 * 110.48714 * 203.40544 * 8 7 6 34 34 H 1.08999 * 110.48755 * 80.76468 * 8 7 6 35 35 H 1.08994 * 110.03007 * 238.57015 * 9 4 3 36 36 H 1.08992 * 110.03187 * 0.02562 * 9 4 3 37 37 H 0.97000 * 119.99501 * 0.02562 * 12 10 2 38 38 H 1.09004 * 109.47298 * 300.00557 * 13 12 10 39 39 H 1.09000 * 109.47160 * 60.00094 * 13 12 10 40 40 H 1.09004 * 109.47275 * 300.00478 * 14 13 12 41 41 H 1.09000 * 109.47397 * 60.00196 * 14 13 12 42 42 H 0.97006 * 120.00061 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1976 1.2687 0.0000 4 6 2.4526 1.7103 1.4425 5 8 3.3074 0.7711 2.0977 6 6 1.1157 1.8283 2.2033 7 6 1.3104 3.0602 3.1230 8 6 2.1252 4.0289 2.2303 9 6 3.0945 3.1087 1.4599 10 6 2.1388 -1.1672 -0.0005 11 8 3.3548 -1.1673 -0.0010 12 7 1.4650 -2.3344 -0.0005 13 6 2.1974 -3.6032 -0.0017 14 6 1.2032 -4.7660 -0.0021 15 6 1.9566 -6.0712 -0.0026 16 1 3.0366 -6.0713 -0.0022 17 6 1.2672 -7.2652 -0.0025 18 7 -0.0479 -7.2652 -0.0024 19 14 2.2012 -8.8830 -0.0039 20 1 2.4497 -9.3122 1.3958 21 1 1.3980 -9.9176 -0.7037 22 1 3.4982 -8.7052 -0.7049 23 1 -0.3633 0.0000 1.0277 24 1 -0.3633 0.8900 -0.5138 25 1 -0.3634 -0.8900 -0.5139 26 1 3.1500 1.1383 -0.5139 27 1 1.6085 2.0284 -0.5138 28 1 2.9530 -0.1281 2.1290 29 1 0.2944 1.9983 1.5070 30 1 0.9345 0.9326 2.7972 31 1 1.8752 2.7898 4.0153 32 1 0.3490 3.4982 3.3910 33 1 2.6798 4.7384 2.8445 34 1 1.4672 4.5546 1.5384 35 1 4.0576 3.0710 1.9690 36 1 3.2240 3.4728 0.4408 37 1 0.4949 -2.3344 -0.0005 38 1 2.8235 -3.6605 -0.8921 39 1 2.8247 -3.6613 0.8878 40 1 0.5768 -4.7089 0.8882 41 1 0.5762 -4.7078 -0.8918 42 1 -0.5330 -8.1052 -0.0020 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000345850669.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:20:09 Heat of formation + Delta-G solvation = -93.567182 kcal Electronic energy + Delta-G solvation = -21477.659801 eV Core-core repulsion = 18264.161354 eV Total energy + Delta-G solvation = -3213.498447 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 270.173 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.39973 -38.72688 -35.33803 -34.90246 -34.64651 -32.81663 -30.19658 -29.25797 -28.61973 -26.94003 -25.23033 -23.83298 -21.21807 -20.95823 -20.02089 -19.60677 -17.79605 -16.92213 -16.45405 -16.20425 -15.88481 -15.41340 -14.71075 -14.51714 -13.93545 -13.91949 -13.68286 -13.44376 -12.99722 -12.78927 -12.68637 -12.45018 -12.28369 -12.01636 -11.46057 -11.32121 -11.26330 -11.15965 -11.03315 -10.83116 -10.79333 -10.62801 -10.33200 -10.00346 -9.86813 -9.54890 -9.26246 -8.69749 -8.45923 -8.21114 -6.09415 -4.11924 2.85270 3.30049 3.36143 3.40822 3.49095 4.13865 4.25204 4.39353 4.44551 4.51515 4.72439 4.96331 5.00285 5.11220 5.23246 5.25330 5.27874 5.35770 5.42059 5.52917 5.60814 5.65490 5.70510 5.80726 5.82011 5.92481 6.06819 6.13929 6.24685 6.39206 6.55762 6.76831 6.97744 7.10682 7.54904 7.62312 7.79058 7.89692 8.23240 8.34945 8.91119 8.96457 9.52931 11.02259 Molecular weight = 270.17amu Principal moments of inertia in cm(-1) A = 0.040036 B = 0.003400 C = 0.003341 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 699.201715 B = 8232.421577 C = 8377.667710 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.077 3.923 2 N -0.640 5.640 3 C 0.111 3.889 4 C 0.113 3.887 5 O -0.548 6.548 6 C -0.146 4.146 7 C -0.123 4.123 8 C -0.123 4.123 9 C -0.111 4.111 10 C 0.692 3.308 11 O -0.584 6.584 12 N -0.737 5.737 13 C 0.139 3.861 14 C 0.013 3.987 15 C -0.520 4.520 16 H 0.060 0.940 17 C 0.059 3.941 18 N -0.895 5.895 19 Si 0.897 3.103 20 H -0.279 1.279 21 H -0.286 1.286 22 H -0.272 1.272 23 H 0.055 0.945 24 H 0.070 0.930 25 H 0.070 0.930 26 H 0.091 0.909 27 H 0.080 0.920 28 H 0.377 0.623 29 H 0.072 0.928 30 H 0.068 0.932 31 H 0.068 0.932 32 H 0.064 0.936 33 H 0.066 0.934 34 H 0.065 0.935 35 H 0.079 0.921 36 H 0.073 0.927 37 H 0.393 0.607 38 H 0.054 0.946 39 H 0.055 0.945 40 H 0.021 0.979 41 H 0.021 0.979 42 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.016 21.972 2.429 22.197 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 N -0.379 5.379 3 C -0.013 4.013 4 C 0.070 3.930 5 O -0.354 6.354 6 C -0.184 4.184 7 C -0.160 4.160 8 C -0.160 4.160 9 C -0.149 4.149 10 C 0.393 3.607 11 O -0.462 6.462 12 N -0.392 5.392 13 C 0.016 3.984 14 C -0.024 4.024 15 C -0.559 4.559 16 H 0.078 0.922 17 C -0.143 4.143 18 N -0.534 5.534 19 Si 0.725 3.275 20 H -0.205 1.205 21 H -0.212 1.212 22 H -0.197 1.197 23 H 0.074 0.926 24 H 0.089 0.911 25 H 0.088 0.912 26 H 0.109 0.891 27 H 0.098 0.902 28 H 0.226 0.774 29 H 0.091 0.909 30 H 0.087 0.913 31 H 0.087 0.913 32 H 0.083 0.917 33 H 0.085 0.915 34 H 0.084 0.916 35 H 0.098 0.902 36 H 0.091 0.909 37 H 0.228 0.772 38 H 0.072 0.928 39 H 0.073 0.927 40 H 0.040 0.960 41 H 0.039 0.961 42 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -0.883 22.321 2.472 22.475 hybrid contribution -0.637 -1.475 -0.113 1.611 sum -1.520 20.846 2.359 21.034 Atomic orbital electron populations 1.21812 0.80119 1.02969 1.01729 1.47064 1.06149 1.05028 1.79659 1.22103 0.98256 0.84188 0.96759 1.22290 0.89486 0.89941 0.91258 1.86505 1.47704 1.21818 1.79417 1.23123 0.97644 0.98907 0.98733 1.22477 0.99768 0.95485 0.98286 1.22354 0.97787 0.97496 0.98378 1.22086 0.99907 0.91874 1.01038 1.16112 0.85587 0.80505 0.78449 1.90947 1.11266 1.86111 1.57884 1.45723 1.09982 1.05333 1.78212 1.21607 0.95657 0.80429 1.00721 1.19316 0.94242 0.91125 0.97725 1.21054 0.93288 0.90339 1.51222 0.92197 1.24995 0.94895 0.99414 0.94996 1.69957 1.06092 1.26852 1.50488 0.86509 0.79856 0.82969 0.78210 1.20550 1.21196 1.19697 0.92637 0.91118 0.91176 0.89096 0.90214 0.77442 0.90906 0.91281 0.91318 0.91699 0.91489 0.91576 0.90224 0.90871 0.77236 0.92787 0.92670 0.96025 0.96059 0.92872 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.71 8.70 59.85 0.52 1.24 16 2 N -0.64 -8.11 2.57 -187.34 -0.48 -8.60 16 3 C 0.11 1.28 4.42 -4.04 -0.02 1.26 16 4 C 0.11 1.28 1.12 -89.50 -0.10 1.18 16 5 O -0.55 -8.34 12.44 -41.78 -0.52 -8.86 16 6 C -0.15 -1.39 4.69 -25.03 -0.12 -1.51 16 7 C -0.12 -1.04 6.91 -24.70 -0.17 -1.21 16 8 C -0.12 -0.95 6.83 -25.07 -0.17 -1.12 16 9 C -0.11 -1.07 6.27 -25.61 -0.16 -1.23 16 10 C 0.69 11.89 7.09 -86.92 -0.62 11.28 16 11 O -0.58 -12.26 14.79 -1.27 -0.02 -12.28 16 12 N -0.74 -12.93 5.42 -65.23 -0.35 -13.29 16 13 C 0.14 2.97 5.61 -4.05 -0.02 2.94 16 14 C 0.01 0.33 5.09 -27.89 -0.14 0.19 16 15 C -0.52 -14.44 9.11 -34.44 -0.31 -14.75 16 16 H 0.06 1.64 7.74 -52.49 -0.41 1.23 16 17 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 18 N -0.89 -26.07 13.29 55.43 0.74 -25.33 16 19 Si 0.90 21.41 29.54 -169.99 -5.02 16.39 16 20 H -0.28 -6.59 7.11 56.52 0.40 -6.18 16 21 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 22 H -0.27 -6.41 7.11 56.52 0.40 -6.01 16 23 H 0.06 0.47 7.19 -51.93 -0.37 0.09 16 24 H 0.07 0.49 7.89 -51.93 -0.41 0.08 16 25 H 0.07 0.66 6.36 -51.93 -0.33 0.33 16 26 H 0.09 1.27 7.42 -51.93 -0.39 0.88 16 27 H 0.08 0.69 7.89 -51.93 -0.41 0.28 16 28 H 0.38 6.02 6.91 45.56 0.31 6.34 16 29 H 0.07 0.59 6.49 -51.93 -0.34 0.25 16 30 H 0.07 0.74 8.05 -51.93 -0.42 0.32 16 31 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 32 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 33 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 34 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 35 H 0.08 0.87 7.95 -51.93 -0.41 0.46 16 36 H 0.07 0.60 7.67 -51.93 -0.40 0.20 16 37 H 0.39 6.02 6.20 -40.82 -0.25 5.76 16 38 H 0.05 1.21 8.14 -51.93 -0.42 0.79 16 39 H 0.05 1.22 8.14 -51.93 -0.42 0.80 16 40 H 0.02 0.55 8.14 -51.93 -0.42 0.13 16 41 H 0.02 0.55 8.14 -51.93 -0.42 0.12 16 42 H 0.26 7.20 8.31 -40.82 -0.34 6.86 16 LS Contribution 331.89 15.07 5.00 5.00 Total: -1.00 -32.02 331.89 -8.40 -40.43 By element: Atomic # 1 Polarization: 13.06 SS G_CDS: -6.34 Total: 6.72 kcal Atomic # 6 Polarization: 1.22 SS G_CDS: -1.41 Total: -0.19 kcal Atomic # 7 Polarization: -47.11 SS G_CDS: -0.10 Total: -47.21 kcal Atomic # 8 Polarization: -20.60 SS G_CDS: -0.54 Total: -21.14 kcal Atomic # 14 Polarization: 21.41 SS G_CDS: -5.02 Total: 16.39 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -32.02 -8.40 -40.43 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000345850669.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.141 kcal (2) G-P(sol) polarization free energy of solvation -32.024 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.165 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.402 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.426 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.567 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds