Wall clock time and date at job start Mon Mar 30 2020 01:20:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.46501 * 120.00098 * 2 1 4 4 C 1.52995 * 109.46937 * 90.00021 * 3 2 1 5 5 O 1.42909 * 110.01753 * 64.30116 * 4 3 2 6 6 C 1.54268 * 110.03638 * 302.91136 * 4 3 2 7 7 C 1.54964 * 104.15932 * 217.13729 * 6 4 3 8 8 C 1.54893 * 102.77818 * 37.88374 * 7 6 4 9 9 C 1.53878 * 110.03169 * 185.68702 * 4 3 2 10 10 C 1.34771 * 119.99594 * 180.02562 * 2 1 3 11 11 O 1.21593 * 120.00167 * 179.97438 * 10 2 1 12 12 N 1.34780 * 120.00532 * 359.97438 * 10 2 1 13 13 C 1.46496 * 120.00367 * 179.97438 * 12 10 2 14 14 C 1.52993 * 109.47399 * 180.02562 * 13 12 10 15 15 C 1.50700 * 109.47458 * 180.02562 * 14 13 12 16 16 H 1.08002 * 120.00079 * 0.02562 * 15 14 13 17 17 C 1.37880 * 120.00195 * 179.97438 * 15 14 13 18 18 N 1.31514 * 119.99793 * 0.02562 * 17 15 14 19 19 Si 1.86800 * 120.00027 * 179.97438 * 17 15 14 20 20 H 1.48496 * 109.46989 * 90.00259 * 19 17 15 21 21 H 1.48503 * 109.46975 * 210.00419 * 19 17 15 22 22 H 1.48504 * 109.46986 * 330.00098 * 19 17 15 23 23 H 1.09001 * 109.47060 * 270.00243 * 1 2 3 24 24 H 1.09004 * 109.47073 * 29.99732 * 1 2 3 25 25 H 1.09000 * 109.47212 * 149.99814 * 1 2 3 26 26 H 1.09000 * 109.46877 * 210.00112 * 3 2 1 27 27 H 1.09000 * 109.47251 * 330.00217 * 3 2 1 28 28 H 0.96704 * 113.99350 * 300.69990 * 5 4 3 29 29 H 1.09006 * 110.48147 * 335.78074 * 6 4 3 30 30 H 1.08992 * 110.48894 * 98.42598 * 6 4 3 31 31 H 1.09003 * 110.72127 * 279.57257 * 7 6 4 32 32 H 1.09001 * 110.76413 * 156.21708 * 7 6 4 33 33 H 1.09003 * 110.48714 * 203.40544 * 8 7 6 34 34 H 1.08999 * 110.48755 * 80.76468 * 8 7 6 35 35 H 1.08994 * 110.03007 * 238.57015 * 9 4 3 36 36 H 1.08992 * 110.03187 * 0.02562 * 9 4 3 37 37 H 0.97000 * 119.99501 * 0.02562 * 12 10 2 38 38 H 1.09004 * 109.47298 * 300.00557 * 13 12 10 39 39 H 1.09000 * 109.47160 * 60.00094 * 13 12 10 40 40 H 1.09004 * 109.47275 * 300.00478 * 14 13 12 41 41 H 1.09000 * 109.47397 * 60.00196 * 14 13 12 42 42 H 0.97006 * 120.00061 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1976 1.2687 0.0000 4 6 2.4526 1.7103 1.4425 5 8 3.3074 0.7711 2.0977 6 6 1.1157 1.8283 2.2033 7 6 1.3104 3.0602 3.1230 8 6 2.1252 4.0289 2.2303 9 6 3.0945 3.1087 1.4599 10 6 2.1388 -1.1672 -0.0005 11 8 3.3548 -1.1673 -0.0010 12 7 1.4650 -2.3344 -0.0005 13 6 2.1974 -3.6032 -0.0017 14 6 1.2032 -4.7660 -0.0021 15 6 1.9566 -6.0712 -0.0026 16 1 3.0366 -6.0713 -0.0022 17 6 1.2672 -7.2652 -0.0025 18 7 -0.0479 -7.2652 -0.0024 19 14 2.2012 -8.8830 -0.0039 20 1 2.4497 -9.3122 1.3958 21 1 1.3980 -9.9176 -0.7037 22 1 3.4982 -8.7052 -0.7049 23 1 -0.3633 0.0000 1.0277 24 1 -0.3633 0.8900 -0.5138 25 1 -0.3634 -0.8900 -0.5139 26 1 3.1500 1.1383 -0.5139 27 1 1.6085 2.0284 -0.5138 28 1 2.9530 -0.1281 2.1290 29 1 0.2944 1.9983 1.5070 30 1 0.9345 0.9326 2.7972 31 1 1.8752 2.7898 4.0153 32 1 0.3490 3.4982 3.3910 33 1 2.6798 4.7384 2.8445 34 1 1.4672 4.5546 1.5384 35 1 4.0576 3.0710 1.9690 36 1 3.2240 3.4728 0.4408 37 1 0.4949 -2.3344 -0.0005 38 1 2.8235 -3.6605 -0.8921 39 1 2.8247 -3.6613 0.8878 40 1 0.5768 -4.7089 0.8882 41 1 0.5762 -4.7078 -0.8918 42 1 -0.5330 -8.1052 -0.0020 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000345850669.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:20:09 Heat of formation + Delta-G solvation = -116.004826 kcal Electronic energy + Delta-G solvation = -21478.632770 eV Core-core repulsion = 18264.161354 eV Total energy + Delta-G solvation = -3214.471416 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 270.173 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.56029 -39.79589 -36.69913 -36.28812 -35.72624 -34.77338 -31.73841 -30.35782 -29.51684 -27.83048 -26.86579 -25.15140 -22.90739 -21.83382 -21.16112 -20.67695 -19.06272 -18.47908 -17.94070 -17.37522 -16.88417 -16.49809 -16.37757 -16.04331 -15.26067 -15.03339 -14.96177 -14.49747 -14.26842 -13.98342 -13.90036 -13.55630 -13.41897 -13.08231 -12.93912 -12.86059 -12.51959 -12.31048 -12.21655 -11.98500 -11.97387 -11.71289 -11.65563 -11.46552 -11.44015 -11.13296 -10.92234 -10.60092 -10.10783 -9.43840 -8.24070 -6.34065 1.42023 1.42469 1.53723 1.67545 2.12879 2.40968 3.06122 3.10831 3.22953 3.64518 3.73104 3.90581 4.14489 4.28751 4.30717 4.47715 4.51207 4.51795 4.52984 4.64052 4.71685 4.80146 4.84087 4.86857 4.93522 4.95631 5.05986 5.12367 5.20917 5.31203 5.33155 5.46615 5.50615 5.57970 5.59302 5.78803 5.91349 6.17450 6.67755 6.78870 6.99590 7.35198 7.57751 8.87820 Molecular weight = 270.17amu Principal moments of inertia in cm(-1) A = 0.040036 B = 0.003400 C = 0.003341 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 699.201715 B = 8232.421577 C = 8377.667710 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.068 3.932 2 N -0.628 5.628 3 C 0.111 3.889 4 C 0.102 3.898 5 O -0.572 6.572 6 C -0.141 4.141 7 C -0.123 4.123 8 C -0.115 4.115 9 C -0.113 4.113 10 C 0.691 3.309 11 O -0.627 6.627 12 N -0.733 5.733 13 C 0.160 3.840 14 C 0.026 3.974 15 C -0.547 4.547 16 H 0.058 0.942 17 C 0.008 3.992 18 N -0.926 5.926 19 Si 0.964 3.036 20 H -0.272 1.272 21 H -0.279 1.279 22 H -0.267 1.267 23 H 0.068 0.932 24 H 0.106 0.894 25 H 0.067 0.933 26 H 0.062 0.938 27 H 0.121 0.879 28 H 0.368 0.632 29 H 0.096 0.904 30 H 0.053 0.947 31 H 0.051 0.949 32 H 0.084 0.916 33 H 0.072 0.928 34 H 0.089 0.911 35 H 0.058 0.942 36 H 0.089 0.911 37 H 0.405 0.595 38 H 0.040 0.960 39 H 0.043 0.957 40 H 0.009 0.991 41 H 0.008 0.992 42 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.181 23.447 2.143 23.758 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 N -0.365 5.365 3 C -0.013 4.013 4 C 0.060 3.940 5 O -0.378 6.378 6 C -0.179 4.179 7 C -0.161 4.161 8 C -0.152 4.152 9 C -0.151 4.151 10 C 0.392 3.608 11 O -0.508 6.508 12 N -0.389 5.389 13 C 0.036 3.964 14 C -0.012 4.012 15 C -0.585 4.585 16 H 0.076 0.924 17 C -0.191 4.191 18 N -0.565 5.565 19 Si 0.789 3.211 20 H -0.198 1.198 21 H -0.204 1.204 22 H -0.192 1.192 23 H 0.086 0.914 24 H 0.124 0.876 25 H 0.086 0.914 26 H 0.081 0.919 27 H 0.139 0.861 28 H 0.216 0.784 29 H 0.115 0.885 30 H 0.072 0.928 31 H 0.069 0.931 32 H 0.103 0.897 33 H 0.091 0.909 34 H 0.107 0.893 35 H 0.077 0.923 36 H 0.108 0.892 37 H 0.242 0.758 38 H 0.059 0.941 39 H 0.062 0.938 40 H 0.027 0.973 41 H 0.026 0.974 42 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -2.094 23.855 2.189 24.046 hybrid contribution -0.303 -1.848 -0.025 1.873 sum -2.396 22.006 2.164 22.242 Atomic orbital electron populations 1.22120 0.77468 1.04656 1.03104 1.47049 1.07690 1.03816 1.77957 1.22256 0.97711 0.84263 0.97034 1.22643 0.90390 0.89872 0.91098 1.86503 1.49338 1.21789 1.80202 1.23087 0.97030 0.98797 0.98960 1.22490 1.00677 0.95301 0.97584 1.22355 0.97482 0.96983 0.98424 1.22152 0.99387 0.91328 1.02204 1.16223 0.85102 0.81365 0.78127 1.90917 1.13349 1.86870 1.59707 1.45390 1.10394 1.04449 1.78686 1.21056 0.94609 0.81248 0.99493 1.19107 0.94182 0.91618 0.96286 1.21462 0.93571 0.91950 1.51526 0.92417 1.25848 0.95802 1.03006 0.94408 1.70052 1.07470 1.27986 1.51016 0.85460 0.78631 0.78524 0.78526 1.19768 1.20443 1.19164 0.91370 0.87587 0.91419 0.91944 0.86084 0.78444 0.88516 0.92845 0.93057 0.89733 0.90886 0.89251 0.92304 0.89208 0.75805 0.94122 0.93825 0.97292 0.97373 0.92529 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.06 8.70 127.77 1.11 2.17 16 2 N -0.63 -15.04 2.57 -864.89 -2.22 -17.27 16 3 C 0.11 2.36 4.42 86.38 0.38 2.74 16 4 C 0.10 2.21 1.12 -10.07 -0.01 2.20 16 5 O -0.57 -18.00 12.44 -142.72 -1.78 -19.77 16 6 C -0.14 -2.38 4.69 31.70 0.15 -2.23 16 7 C -0.12 -1.81 6.91 31.91 0.22 -1.59 16 8 C -0.12 -1.45 6.83 31.67 0.22 -1.23 16 9 C -0.11 -1.99 6.27 31.32 0.20 -1.80 16 10 C 0.69 23.87 7.09 179.06 1.27 25.14 16 11 O -0.63 -27.17 14.79 2.26 0.03 -27.13 16 12 N -0.73 -25.93 5.42 -478.54 -2.59 -28.52 16 13 C 0.16 7.05 5.61 86.38 0.48 7.54 16 14 C 0.03 1.30 5.09 29.85 0.15 1.45 16 15 C -0.55 -30.77 9.11 25.60 0.23 -30.54 16 16 H 0.06 3.20 7.74 -2.91 -0.02 3.17 16 17 C 0.01 0.46 5.46 84.66 0.46 0.92 16 18 N -0.93 -54.14 13.29 21.45 0.28 -53.86 16 19 Si 0.96 43.83 29.54 68.60 2.03 45.86 16 20 H -0.27 -12.00 7.11 99.48 0.71 -11.30 16 21 H -0.28 -12.29 7.11 99.48 0.71 -11.59 16 22 H -0.27 -11.84 7.11 99.48 0.71 -11.13 16 23 H 0.07 0.94 7.19 -2.39 -0.02 0.92 16 24 H 0.11 0.96 7.89 -2.38 -0.02 0.94 16 25 H 0.07 1.12 6.36 -2.39 -0.02 1.11 16 26 H 0.06 1.73 7.42 -2.39 -0.02 1.71 16 27 H 0.12 1.59 7.89 -2.39 -0.02 1.57 16 28 H 0.37 12.37 6.91 -74.05 -0.51 11.86 16 29 H 0.10 1.16 6.49 -2.38 -0.02 1.14 16 30 H 0.05 1.08 8.05 -2.39 -0.02 1.06 16 31 H 0.05 0.92 8.14 -2.39 -0.02 0.91 16 32 H 0.08 0.93 8.14 -2.39 -0.02 0.91 16 33 H 0.07 0.85 8.14 -2.39 -0.02 0.83 16 34 H 0.09 0.76 8.14 -2.39 -0.02 0.74 16 35 H 0.06 1.28 7.95 -2.39 -0.02 1.27 16 36 H 0.09 1.26 7.67 -2.39 -0.02 1.24 16 37 H 0.40 12.26 6.20 -92.71 -0.58 11.69 16 38 H 0.04 1.88 8.14 -2.38 -0.02 1.87 16 39 H 0.04 2.01 8.14 -2.39 -0.02 1.99 16 40 H 0.01 0.46 8.14 -2.38 -0.02 0.44 16 41 H 0.01 0.42 8.14 -2.39 -0.02 0.40 16 42 H 0.27 14.60 8.31 -92.70 -0.77 13.82 16 Total: -1.00 -70.88 331.89 0.54 -70.34 By element: Atomic # 1 Polarization: 25.65 SS G_CDS: -0.07 Total: 25.57 kcal Atomic # 6 Polarization: -0.09 SS G_CDS: 4.86 Total: 4.78 kcal Atomic # 7 Polarization: -95.11 SS G_CDS: -4.53 Total: -99.65 kcal Atomic # 8 Polarization: -45.16 SS G_CDS: -1.74 Total: -46.91 kcal Atomic # 14 Polarization: 43.83 SS G_CDS: 2.03 Total: 45.86 kcal Total: -70.88 0.54 -70.34 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000345850669.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.663 kcal (2) G-P(sol) polarization free energy of solvation -70.884 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.547 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.542 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.342 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.005 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds