Wall clock time and date at job start Mon Mar 30 2020 00:54:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52990 * 1 3 3 N 1.46505 * 109.47339 * 2 1 4 4 C 1.46499 * 120.00150 * 89.99604 * 3 2 1 5 5 C 1.50696 * 109.46727 * 90.00418 * 4 3 2 6 6 H 1.08001 * 120.00413 * 0.02562 * 5 4 3 7 7 C 1.37877 * 120.00000 * 179.97438 * 5 4 3 8 8 N 1.31518 * 120.00087 * 0.02562 * 7 5 4 9 9 Si 1.86799 * 120.00340 * 179.97438 * 7 5 4 10 10 H 1.48496 * 109.47504 * 180.02562 * 9 7 5 11 11 H 1.48501 * 109.47437 * 300.00592 * 9 7 5 12 12 H 1.48503 * 109.46774 * 60.00288 * 9 7 5 13 13 C 1.34774 * 119.99745 * 270.00253 * 3 2 1 14 14 O 1.21284 * 119.99825 * 179.97438 * 13 3 2 15 15 C 1.50698 * 120.00396 * 359.97438 * 13 3 2 16 16 N 1.46901 * 109.47265 * 186.04080 * 15 13 3 17 17 C 1.48524 * 111.00198 * 59.24052 * 16 15 13 18 18 C 1.54934 * 103.22842 * 159.72260 * 17 16 15 19 19 H 1.09000 * 110.72765 * 80.94380 * 18 17 16 20 20 C 1.53003 * 110.87859 * 204.15545 * 18 17 16 21 21 C 1.54599 * 102.92322 * 322.58253 * 18 17 16 22 22 H 1.08996 * 110.30974 * 263.04537 * 21 18 17 23 23 O 1.42905 * 110.39400 * 140.91304 * 21 18 17 24 24 C 1.47903 * 110.99780 * 176.64024 * 16 15 13 25 25 H 1.09003 * 109.47020 * 299.99770 * 1 2 3 26 26 H 1.08998 * 109.47669 * 59.99767 * 1 2 3 27 27 H 1.09007 * 109.47070 * 180.02562 * 1 2 3 28 28 H 1.08996 * 109.47351 * 240.00169 * 2 1 3 29 29 H 1.09004 * 109.47737 * 119.99812 * 2 1 3 30 30 H 1.08996 * 109.46964 * 330.00751 * 4 3 2 31 31 H 1.09000 * 109.47346 * 210.00392 * 4 3 2 32 32 H 0.96994 * 120.00041 * 179.97438 * 8 7 5 33 33 H 1.08999 * 109.46763 * 306.03706 * 15 13 3 34 34 H 1.08996 * 109.47232 * 66.03710 * 15 13 3 35 35 H 1.09003 * 110.66702 * 278.15660 * 17 16 15 36 36 H 1.08997 * 110.67252 * 41.28539 * 17 16 15 37 37 H 1.08997 * 109.47195 * 173.58560 * 20 18 17 38 38 H 1.09004 * 109.47181 * 293.58862 * 20 18 17 39 39 H 1.09003 * 109.46862 * 53.59108 * 20 18 17 40 40 H 0.96694 * 113.99368 * 182.78287 * 23 21 18 41 41 H 1.09002 * 109.92087 * 333.49980 * 24 16 15 42 42 H 1.08999 * 109.92041 * 94.60461 * 24 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2624 2.0719 1.2687 5 6 3.6857 1.8351 1.7037 6 1 4.3428 1.2310 1.0957 7 6 4.1493 2.3906 2.8773 8 7 3.3494 3.1267 3.6175 9 14 5.9133 2.0965 3.4170 10 1 6.1609 2.7967 4.7029 11 1 6.1402 0.6398 3.5953 12 1 6.8412 2.6189 2.3818 13 6 2.2429 2.0165 -1.1672 14 8 2.6468 3.1601 -1.1672 15 6 1.9922 1.3060 -2.4723 16 7 2.4455 2.1512 -3.5850 17 6 3.8933 2.4595 -3.4638 18 6 4.2914 2.8648 -4.9052 19 1 4.0178 3.9010 -5.1041 20 6 5.7878 2.6477 -5.1392 21 6 3.4558 1.9010 -5.7787 22 1 4.0569 1.0414 -6.0750 23 8 2.9590 2.5798 -6.9339 24 6 2.2888 1.4526 -4.8792 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3633 -1.0277 0.0005 28 1 1.8933 -0.5138 -0.8899 29 1 1.8934 -0.5138 0.8900 30 1 1.5817 1.6878 2.0283 31 1 2.0954 3.1411 1.1384 32 1 3.6754 3.5172 4.4433 33 1 2.5409 0.3643 -2.4845 34 1 0.9259 1.1066 -2.5785 35 1 4.0539 3.2874 -2.7732 36 1 4.4491 1.5778 -3.1448 37 1 6.0219 2.8303 -6.1879 38 1 6.3569 3.3363 -4.5145 39 1 6.0506 1.6216 -4.8816 40 1 2.3922 2.0349 -7.4967 41 1 2.3309 0.3742 -4.7266 42 1 1.3377 1.7260 -5.3361 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000351959318.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:54:10 Heat of formation + Delta-G solvation = -78.664222 kcal Electronic energy + Delta-G solvation = -21746.843388 eV Core-core repulsion = 18533.991182 eV Total energy + Delta-G solvation = -3212.852206 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 270.173 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -39.86627 -38.53979 -35.91319 -35.13285 -33.11474 -32.67063 -30.10866 -29.25269 -27.65445 -26.51043 -24.77154 -23.02801 -22.45186 -21.21209 -20.23804 -18.30299 -17.37891 -16.69495 -16.32528 -15.92342 -15.33096 -15.05121 -14.90279 -14.21667 -13.83326 -13.53009 -13.45763 -13.34362 -13.07070 -12.65503 -12.55444 -12.31477 -11.99186 -11.84956 -11.68966 -11.45413 -11.30226 -11.16176 -10.92949 -10.77076 -10.69801 -10.52323 -10.45420 -10.17477 -10.09004 -9.63958 -8.83807 -8.42605 -8.24083 -7.63460 -6.03443 -4.08339 3.31240 3.36080 3.37350 3.46326 3.69350 4.05669 4.20601 4.44402 4.57519 4.58374 4.98276 5.09466 5.14587 5.22646 5.30729 5.33803 5.39799 5.45361 5.51688 5.57622 5.65176 5.71314 5.79562 5.82917 5.87815 6.02416 6.08757 6.22399 6.27625 6.41123 6.47779 6.92664 6.95072 7.15475 7.47344 7.50790 7.57547 7.93159 8.24754 8.45190 8.91364 9.14435 9.56752 11.04556 Molecular weight = 270.17amu Principal moments of inertia in cm(-1) A = 0.019080 B = 0.005181 C = 0.004349 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1467.147612 B = 5403.536403 C = 6437.081074 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.106 3.894 3 N -0.599 5.599 4 C 0.248 3.752 5 C -0.526 4.526 6 H 0.055 0.945 7 C 0.062 3.938 8 N -0.894 5.894 9 Si 0.897 3.103 10 H -0.286 1.286 11 H -0.278 1.278 12 H -0.276 1.276 13 C 0.506 3.494 14 O -0.524 6.524 15 C 0.027 3.973 16 N -0.493 5.493 17 C 0.040 3.960 18 C -0.090 4.090 19 H 0.094 0.906 20 C -0.142 4.142 21 C 0.098 3.902 22 H 0.062 0.938 23 O -0.559 6.559 24 C 0.004 3.996 25 H 0.061 0.939 26 H 0.050 0.950 27 H 0.059 0.941 28 H 0.061 0.939 29 H 0.082 0.918 30 H 0.031 0.969 31 H 0.043 0.957 32 H 0.264 0.736 33 H 0.056 0.944 34 H 0.097 0.903 35 H 0.111 0.889 36 H 0.042 0.958 37 H 0.058 0.942 38 H 0.063 0.937 39 H 0.053 0.947 40 H 0.374 0.626 41 H 0.046 0.954 42 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.478 -8.338 -16.604 18.745 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.018 4.018 3 N -0.332 5.332 4 C 0.129 3.871 5 C -0.565 4.565 6 H 0.073 0.927 7 C -0.140 4.140 8 N -0.533 5.533 9 Si 0.725 3.275 10 H -0.212 1.212 11 H -0.203 1.203 12 H -0.202 1.202 13 C 0.291 3.709 14 O -0.400 6.400 15 C -0.104 4.104 16 N -0.218 5.218 17 C -0.087 4.087 18 C -0.109 4.109 19 H 0.112 0.888 20 C -0.200 4.200 21 C 0.038 3.962 22 H 0.080 0.920 23 O -0.364 6.364 24 C -0.125 4.125 25 H 0.080 0.920 26 H 0.069 0.931 27 H 0.078 0.922 28 H 0.080 0.920 29 H 0.100 0.900 30 H 0.049 0.951 31 H 0.061 0.939 32 H 0.073 0.927 33 H 0.074 0.926 34 H 0.115 0.885 35 H 0.129 0.871 36 H 0.060 0.940 37 H 0.077 0.923 38 H 0.082 0.918 39 H 0.072 0.928 40 H 0.221 0.779 41 H 0.065 0.935 42 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -2.245 -6.648 -16.115 17.577 hybrid contribution 0.955 -1.640 0.262 1.916 sum -1.290 -8.288 -15.853 17.935 Atomic orbital electron populations 1.22221 0.96775 1.01340 1.02410 1.21409 0.93550 0.84358 1.02490 1.48260 1.64076 1.13155 1.07693 1.19245 0.96146 0.93678 0.78057 1.21381 0.96926 1.31923 1.06256 0.92675 1.24926 0.97766 0.94928 0.96403 1.69921 1.35700 1.33360 1.14353 0.86580 0.84897 0.78191 0.77860 1.21157 1.20319 1.20204 1.20060 0.78996 0.87112 0.84697 1.90645 1.44881 1.17662 1.86786 1.22328 1.02126 0.94764 0.91189 1.64545 1.18154 1.39197 0.99896 1.23478 0.86747 1.01984 0.96470 1.22121 0.94394 1.00801 0.93543 0.88756 1.21764 0.94647 1.01800 1.01760 1.22794 0.93409 0.94526 0.85451 0.92035 1.86582 1.69745 1.42948 1.37090 1.23703 1.00074 0.96729 0.92002 0.91968 0.93059 0.92240 0.92043 0.89974 0.95095 0.93864 0.92667 0.92617 0.88454 0.87055 0.93990 0.92328 0.91789 0.92794 0.77904 0.93550 0.89628 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.25 10.24 37.15 0.38 -1.87 16 2 C 0.11 1.69 5.96 -4.04 -0.02 1.66 16 3 N -0.60 -12.61 2.46 -175.07 -0.43 -13.04 16 4 C 0.25 6.48 5.16 -5.20 -0.03 6.46 16 5 C -0.53 -14.87 9.39 -34.44 -0.32 -15.19 16 6 H 0.05 1.55 7.81 -52.49 -0.41 1.14 16 7 C 0.06 1.77 5.46 -17.82 -0.10 1.67 16 8 N -0.89 -26.65 13.29 55.43 0.74 -25.91 16 9 Si 0.90 21.84 29.54 -169.99 -5.02 16.82 16 10 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 11 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 12 H -0.28 -6.76 7.11 56.52 0.40 -6.35 16 13 C 0.51 10.59 7.31 -10.99 -0.08 10.51 16 14 O -0.52 -13.24 13.87 5.55 0.08 -13.16 16 15 C 0.03 0.43 4.03 -4.98 -0.02 0.41 16 16 N -0.49 -7.74 5.11 -231.90 -1.18 -8.92 16 17 C 0.04 0.65 5.03 -1.90 -0.01 0.64 16 18 C -0.09 -1.19 3.39 -88.76 -0.30 -1.49 16 19 H 0.09 1.40 8.09 -51.93 -0.42 0.98 16 20 C -0.14 -1.59 9.17 37.16 0.34 -1.25 16 21 C 0.10 1.09 3.93 -25.37 -0.10 0.99 16 22 H 0.06 0.59 7.85 -51.93 -0.41 0.18 16 23 O -0.56 -6.11 13.27 -35.23 -0.47 -6.58 16 24 C 0.00 0.04 6.50 -2.75 -0.02 0.02 16 25 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 26 H 0.05 0.65 7.41 -51.93 -0.38 0.27 16 27 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 28 H 0.06 0.81 6.28 -51.93 -0.33 0.48 16 29 H 0.08 1.36 8.07 -51.93 -0.42 0.94 16 30 H 0.03 0.82 8.07 -51.93 -0.42 0.40 16 31 H 0.04 1.29 7.42 -51.93 -0.39 0.90 16 32 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 33 H 0.06 0.77 6.92 -51.93 -0.36 0.41 16 34 H 0.10 1.32 7.41 -51.93 -0.38 0.94 16 35 H 0.11 2.18 6.43 -51.93 -0.33 1.84 16 36 H 0.04 0.66 7.89 -51.93 -0.41 0.25 16 37 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 38 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 39 H 0.05 0.56 8.11 -51.93 -0.42 0.14 16 40 H 0.37 2.30 9.11 45.56 0.41 2.71 16 41 H 0.05 0.46 7.68 -51.93 -0.40 0.06 16 42 H 0.09 0.93 7.97 -51.93 -0.41 0.52 16 LS Contribution 337.80 15.07 5.09 5.09 Total: -1.00 -33.89 337.80 -7.78 -41.67 By element: Atomic # 1 Polarization: 7.78 SS G_CDS: -6.30 Total: 1.48 kcal Atomic # 6 Polarization: 2.84 SS G_CDS: -0.28 Total: 2.56 kcal Atomic # 7 Polarization: -47.00 SS G_CDS: -0.88 Total: -47.88 kcal Atomic # 8 Polarization: -19.35 SS G_CDS: -0.39 Total: -19.74 kcal Atomic # 14 Polarization: 21.84 SS G_CDS: -5.02 Total: 16.82 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -33.89 -7.78 -41.67 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000351959318.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.992 kcal (2) G-P(sol) polarization free energy of solvation -33.890 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.882 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.782 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.672 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.664 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds