Wall clock time and date at job start Mon Mar 30 2020 00:54:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52990 * 1 3 3 N 1.46505 * 109.47339 * 2 1 4 4 C 1.46499 * 120.00150 * 89.99604 * 3 2 1 5 5 C 1.50696 * 109.46727 * 90.00418 * 4 3 2 6 6 H 1.08001 * 120.00413 * 0.02562 * 5 4 3 7 7 C 1.37877 * 120.00000 * 179.97438 * 5 4 3 8 8 N 1.31518 * 120.00087 * 0.02562 * 7 5 4 9 9 Si 1.86799 * 120.00340 * 179.97438 * 7 5 4 10 10 H 1.48496 * 109.47504 * 180.02562 * 9 7 5 11 11 H 1.48501 * 109.47437 * 300.00592 * 9 7 5 12 12 H 1.48503 * 109.46774 * 60.00288 * 9 7 5 13 13 C 1.34774 * 119.99745 * 270.00253 * 3 2 1 14 14 O 1.21284 * 119.99825 * 179.97438 * 13 3 2 15 15 C 1.50698 * 120.00396 * 359.97438 * 13 3 2 16 16 N 1.46901 * 109.47265 * 186.04080 * 15 13 3 17 17 C 1.48524 * 111.00198 * 59.24052 * 16 15 13 18 18 C 1.54934 * 103.22842 * 159.72260 * 17 16 15 19 19 H 1.09000 * 110.72765 * 80.94380 * 18 17 16 20 20 C 1.53003 * 110.87859 * 204.15545 * 18 17 16 21 21 C 1.54599 * 102.92322 * 322.58253 * 18 17 16 22 22 H 1.08996 * 110.30974 * 263.04537 * 21 18 17 23 23 O 1.42905 * 110.39400 * 140.91304 * 21 18 17 24 24 C 1.47903 * 110.99780 * 176.64024 * 16 15 13 25 25 H 1.09003 * 109.47020 * 299.99770 * 1 2 3 26 26 H 1.08998 * 109.47669 * 59.99767 * 1 2 3 27 27 H 1.09007 * 109.47070 * 180.02562 * 1 2 3 28 28 H 1.08996 * 109.47351 * 240.00169 * 2 1 3 29 29 H 1.09004 * 109.47737 * 119.99812 * 2 1 3 30 30 H 1.08996 * 109.46964 * 330.00751 * 4 3 2 31 31 H 1.09000 * 109.47346 * 210.00392 * 4 3 2 32 32 H 0.96994 * 120.00041 * 179.97438 * 8 7 5 33 33 H 1.08999 * 109.46763 * 306.03706 * 15 13 3 34 34 H 1.08996 * 109.47232 * 66.03710 * 15 13 3 35 35 H 1.09003 * 110.66702 * 278.15660 * 17 16 15 36 36 H 1.08997 * 110.67252 * 41.28539 * 17 16 15 37 37 H 1.08997 * 109.47195 * 173.58560 * 20 18 17 38 38 H 1.09004 * 109.47181 * 293.58862 * 20 18 17 39 39 H 1.09003 * 109.46862 * 53.59108 * 20 18 17 40 40 H 0.96694 * 113.99368 * 182.78287 * 23 21 18 41 41 H 1.09002 * 109.92087 * 333.49980 * 24 16 15 42 42 H 1.08999 * 109.92041 * 94.60461 * 24 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2624 2.0719 1.2687 5 6 3.6857 1.8351 1.7037 6 1 4.3428 1.2310 1.0957 7 6 4.1493 2.3906 2.8773 8 7 3.3494 3.1267 3.6175 9 14 5.9133 2.0965 3.4170 10 1 6.1609 2.7967 4.7029 11 1 6.1402 0.6398 3.5953 12 1 6.8412 2.6189 2.3818 13 6 2.2429 2.0165 -1.1672 14 8 2.6468 3.1601 -1.1672 15 6 1.9922 1.3060 -2.4723 16 7 2.4455 2.1512 -3.5850 17 6 3.8933 2.4595 -3.4638 18 6 4.2914 2.8648 -4.9052 19 1 4.0178 3.9010 -5.1041 20 6 5.7878 2.6477 -5.1392 21 6 3.4558 1.9010 -5.7787 22 1 4.0569 1.0414 -6.0750 23 8 2.9590 2.5798 -6.9339 24 6 2.2888 1.4526 -4.8792 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3633 -1.0277 0.0005 28 1 1.8933 -0.5138 -0.8899 29 1 1.8934 -0.5138 0.8900 30 1 1.5817 1.6878 2.0283 31 1 2.0954 3.1411 1.1384 32 1 3.6754 3.5172 4.4433 33 1 2.5409 0.3643 -2.4845 34 1 0.9259 1.1066 -2.5785 35 1 4.0539 3.2874 -2.7732 36 1 4.4491 1.5778 -3.1448 37 1 6.0219 2.8303 -6.1879 38 1 6.3569 3.3363 -4.5145 39 1 6.0506 1.6216 -4.8816 40 1 2.3922 2.0349 -7.4967 41 1 2.3309 0.3742 -4.7266 42 1 1.3377 1.7260 -5.3361 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000351959318.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:54:10 Heat of formation + Delta-G solvation = -105.741040 kcal Electronic energy + Delta-G solvation = -21748.017526 eV Core-core repulsion = 18533.991182 eV Total energy + Delta-G solvation = -3214.026345 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 270.173 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.17711 -39.86109 -37.09972 -36.57952 -34.94480 -34.01352 -31.64309 -30.43440 -29.12357 -27.94989 -26.07180 -24.65562 -23.90813 -22.37275 -21.22246 -19.87428 -18.63738 -18.27297 -17.95786 -17.37441 -16.57059 -16.48654 -16.35191 -15.76768 -15.17463 -14.74215 -14.63879 -14.49090 -14.34508 -14.04818 -13.84249 -13.58392 -13.44845 -13.27941 -13.12919 -12.76652 -12.63851 -12.62613 -12.49943 -12.41206 -12.15554 -11.84113 -11.81610 -11.72647 -11.42924 -10.98358 -10.64705 -10.46966 -9.43816 -9.36598 -8.22424 -6.37629 1.35198 1.39654 1.46926 1.85187 2.22770 2.40632 2.99890 3.06899 3.26620 3.52016 3.62710 3.82661 4.03243 4.09346 4.19297 4.28520 4.34812 4.41756 4.46073 4.51780 4.57653 4.66977 4.76625 4.89036 4.93718 4.98055 4.98878 5.05277 5.08527 5.21860 5.22945 5.29002 5.39127 5.57828 5.79511 5.86358 5.97082 6.06643 6.70305 6.82614 6.95320 7.28709 7.53235 8.84475 Molecular weight = 270.17amu Principal moments of inertia in cm(-1) A = 0.019080 B = 0.005181 C = 0.004349 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1467.147612 B = 5403.536403 C = 6437.081074 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.099 3.901 3 N -0.605 5.605 4 C 0.264 3.736 5 C -0.541 4.541 6 H 0.053 0.947 7 C 0.007 3.993 8 N -0.929 5.929 9 Si 0.967 3.033 10 H -0.279 1.279 11 H -0.259 1.259 12 H -0.278 1.278 13 C 0.494 3.506 14 O -0.581 6.581 15 C 0.043 3.957 16 N -0.522 5.522 17 C 0.044 3.956 18 C -0.091 4.091 19 H 0.068 0.932 20 C -0.137 4.137 21 C 0.106 3.894 22 H 0.089 0.911 23 O -0.576 6.576 24 C 0.006 3.994 25 H 0.036 0.964 26 H 0.060 0.940 27 H 0.097 0.903 28 H 0.100 0.900 29 H 0.071 0.929 30 H 0.020 0.980 31 H -0.007 1.007 32 H 0.267 0.733 33 H 0.085 0.915 34 H 0.126 0.874 35 H 0.061 0.939 36 H 0.045 0.955 37 H 0.072 0.928 38 H 0.052 0.948 39 H 0.066 0.934 40 H 0.396 0.604 41 H 0.076 0.924 42 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.209 -11.420 -18.680 22.006 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.023 4.023 3 N -0.337 5.337 4 C 0.143 3.857 5 C -0.580 4.580 6 H 0.071 0.929 7 C -0.191 4.191 8 N -0.569 5.569 9 Si 0.791 3.209 10 H -0.204 1.204 11 H -0.183 1.183 12 H -0.204 1.204 13 C 0.282 3.718 14 O -0.461 6.461 15 C -0.088 4.088 16 N -0.247 5.247 17 C -0.084 4.084 18 C -0.110 4.110 19 H 0.087 0.913 20 C -0.195 4.195 21 C 0.047 3.953 22 H 0.107 0.893 23 O -0.384 6.384 24 C -0.122 4.122 25 H 0.055 0.945 26 H 0.079 0.921 27 H 0.115 0.885 28 H 0.118 0.882 29 H 0.090 0.910 30 H 0.038 0.962 31 H 0.011 0.989 32 H 0.076 0.924 33 H 0.103 0.897 34 H 0.144 0.856 35 H 0.079 0.921 36 H 0.063 0.937 37 H 0.091 0.909 38 H 0.072 0.928 39 H 0.085 0.915 40 H 0.247 0.753 41 H 0.094 0.906 42 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -2.015 -9.794 -18.226 20.788 hybrid contribution 0.802 -0.641 0.884 1.355 sum -1.213 -10.435 -17.341 20.275 Atomic orbital electron populations 1.22153 0.94562 1.03527 1.01649 1.21756 0.95344 0.81321 1.03860 1.48294 1.64168 1.15106 1.06117 1.18656 0.95273 0.91368 0.80434 1.21658 0.97804 1.32004 1.06502 0.92898 1.25867 1.02388 0.94449 0.96439 1.70052 1.37860 1.34190 1.14810 0.85481 0.78996 0.79070 0.77345 1.20378 1.18319 1.20366 1.21158 0.77550 0.86743 0.86350 1.90628 1.47249 1.20431 1.87759 1.22252 1.04152 0.94620 0.87735 1.64455 1.17694 1.40928 1.01630 1.23246 0.87676 1.00287 0.97176 1.22061 0.96290 1.00092 0.92556 0.91335 1.21731 0.92982 1.02322 1.02416 1.22707 0.93146 0.94226 0.85241 0.89301 1.86536 1.70445 1.44173 1.37270 1.23801 1.00723 0.98005 0.89647 0.94471 0.92127 0.88472 0.88203 0.91016 0.96158 0.98907 0.92432 0.89746 0.85643 0.92088 0.93662 0.90936 0.92840 0.91479 0.75330 0.90629 0.88664 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.90 10.24 71.98 0.74 -3.17 16 2 C 0.10 2.97 5.96 86.38 0.51 3.49 16 3 N -0.60 -25.87 2.46 -826.18 -2.03 -27.90 16 4 C 0.26 14.57 5.16 85.63 0.44 15.01 16 5 C -0.54 -31.57 9.39 25.60 0.24 -31.33 16 6 H 0.05 3.03 7.81 -2.91 -0.02 3.01 16 7 C 0.01 0.44 5.46 84.65 0.46 0.90 16 8 N -0.93 -57.18 13.29 21.45 0.28 -56.90 16 9 Si 0.97 45.29 29.54 68.60 2.03 47.31 16 10 H -0.28 -12.63 7.11 99.48 0.71 -11.93 16 11 H -0.26 -11.28 7.11 99.48 0.71 -10.58 16 12 H -0.28 -13.02 7.11 99.48 0.71 -12.31 16 13 C 0.49 21.00 7.31 87.66 0.64 21.65 16 14 O -0.58 -31.19 13.87 -3.04 -0.04 -31.23 16 15 C 0.04 1.24 4.03 85.56 0.35 1.59 16 16 N -0.52 -15.65 5.11 -887.58 -4.54 -20.19 16 17 C 0.04 1.42 5.03 86.65 0.44 1.86 16 18 C -0.09 -2.36 3.39 -9.59 -0.03 -2.39 16 19 H 0.07 2.10 8.09 -2.39 -0.02 2.08 16 20 C -0.14 -2.89 9.17 71.98 0.66 -2.23 16 21 C 0.11 2.05 3.93 31.48 0.12 2.17 16 22 H 0.09 1.28 7.85 -2.39 -0.02 1.26 16 23 O -0.58 -10.95 13.27 -148.98 -1.98 -12.92 16 24 C 0.01 0.11 6.50 86.45 0.56 0.67 16 25 H 0.04 1.08 8.14 -2.39 -0.02 1.06 16 26 H 0.06 1.36 7.41 -2.39 -0.02 1.35 16 27 H 0.10 1.66 8.14 -2.38 -0.02 1.64 16 28 H 0.10 2.23 6.28 -2.39 -0.01 2.21 16 29 H 0.07 2.30 8.07 -2.38 -0.02 2.28 16 30 H 0.02 1.14 8.07 -2.39 -0.02 1.12 16 31 H -0.01 -0.46 7.42 -2.39 -0.02 -0.48 16 32 H 0.27 15.41 8.31 -92.71 -0.77 14.64 16 33 H 0.08 1.96 6.92 -2.39 -0.02 1.95 16 34 H 0.13 2.92 7.41 -2.39 -0.02 2.90 16 35 H 0.06 2.58 6.43 -2.39 -0.02 2.56 16 36 H 0.05 1.39 7.89 -2.39 -0.02 1.37 16 37 H 0.07 1.33 8.14 -2.39 -0.02 1.31 16 38 H 0.05 1.21 8.14 -2.38 -0.02 1.19 16 39 H 0.07 1.24 8.11 -2.39 -0.02 1.22 16 40 H 0.40 3.43 9.11 -74.06 -0.67 2.75 16 41 H 0.08 1.08 7.68 -2.39 -0.02 1.06 16 42 H 0.10 1.70 7.97 -2.39 -0.02 1.68 16 Total: -1.00 -79.46 337.80 -0.82 -80.27 By element: Atomic # 1 Polarization: 13.02 SS G_CDS: 0.32 Total: 13.34 kcal Atomic # 6 Polarization: 3.08 SS G_CDS: 5.13 Total: 8.21 kcal Atomic # 7 Polarization: -98.71 SS G_CDS: -6.28 Total: -104.99 kcal Atomic # 8 Polarization: -42.13 SS G_CDS: -2.02 Total: -44.15 kcal Atomic # 14 Polarization: 45.29 SS G_CDS: 2.03 Total: 47.31 kcal Total: -79.46 -0.82 -80.27 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000351959318.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.466 kcal (2) G-P(sol) polarization free energy of solvation -79.457 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.923 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.818 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.275 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.741 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds