Wall clock time and date at job start Mon Mar 30 2020 00:54:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46502 * 109.47198 * 2 1 4 4 C 1.46498 * 119.99857 * 270.00251 * 3 2 1 5 5 C 1.50702 * 109.47105 * 269.99921 * 4 3 2 6 6 H 1.07998 * 119.99631 * 0.02562 * 5 4 3 7 7 C 1.37872 * 119.99903 * 180.02562 * 5 4 3 8 8 N 1.31510 * 120.00350 * 359.97438 * 7 5 4 9 9 Si 1.86802 * 119.99811 * 179.97438 * 7 5 4 10 10 H 1.48508 * 109.47215 * 89.99924 * 9 7 5 11 11 H 1.48504 * 109.47316 * 209.99819 * 9 7 5 12 12 H 1.48500 * 109.47320 * 330.00279 * 9 7 5 13 13 C 1.34775 * 119.99898 * 89.99961 * 3 2 1 14 14 O 1.21281 * 120.00112 * 180.02562 * 13 3 2 15 15 C 1.50700 * 120.00169 * 0.02562 * 13 3 2 16 16 N 1.46896 * 109.47289 * 179.97438 * 15 13 3 17 17 C 1.48529 * 111.00447 * 189.99579 * 16 15 13 18 18 C 1.54938 * 103.22998 * 159.71925 * 17 16 15 19 19 H 1.08991 * 110.72113 * 80.94963 * 18 17 16 20 20 C 1.53002 * 110.72215 * 204.23396 * 18 17 16 21 21 C 1.54593 * 102.92109 * 322.58925 * 18 17 16 22 22 H 1.08993 * 110.31164 * 140.97421 * 21 18 17 23 23 O 1.42903 * 110.31063 * 263.04388 * 21 18 17 24 24 C 1.48126 * 111.00788 * 307.45705 * 16 15 13 25 25 H 1.08999 * 109.47002 * 300.00089 * 1 2 3 26 26 H 1.08999 * 109.47402 * 59.99669 * 1 2 3 27 27 H 1.08997 * 109.47238 * 180.02562 * 1 2 3 28 28 H 1.08999 * 109.47002 * 239.99911 * 2 1 3 29 29 H 1.09002 * 109.46914 * 120.00300 * 2 1 3 30 30 H 1.08998 * 109.47401 * 29.99669 * 4 3 2 31 31 H 1.09000 * 109.46963 * 149.99732 * 4 3 2 32 32 H 0.97004 * 120.00232 * 180.02562 * 8 7 5 33 33 H 1.08993 * 109.47345 * 59.99751 * 15 13 3 34 34 H 1.09003 * 109.46802 * 299.99407 * 15 13 3 35 35 H 1.09001 * 110.66494 * 41.28426 * 17 16 15 36 36 H 1.09005 * 110.66869 * 278.15709 * 17 16 15 37 37 H 1.09001 * 109.46758 * 173.50271 * 20 18 17 38 38 H 1.09004 * 109.46597 * 293.49598 * 20 18 17 39 39 H 1.09000 * 109.47541 * 53.49915 * 20 18 17 40 40 H 0.96700 * 114.00311 * 178.61309 * 23 21 18 41 41 H 1.08999 * 109.99906 * 94.86315 * 24 16 15 42 42 H 1.09004 * 109.93837 * 333.50455 * 24 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2625 2.0718 -1.2687 5 6 3.6858 1.8350 -1.7038 6 1 4.3426 1.2302 -1.0962 7 6 4.1493 2.3904 -2.8775 8 7 3.3493 3.1265 -3.6176 9 14 5.9137 2.0975 -3.4164 10 1 5.9776 0.8767 -4.2597 11 1 6.3927 3.2652 -4.1990 12 1 6.7736 1.9175 -2.2192 13 6 2.2430 2.0165 1.1672 14 8 2.6468 3.1601 1.1672 15 6 1.9924 1.3060 2.4723 16 7 2.3110 2.2058 3.5889 17 6 2.3078 1.4729 4.8808 18 6 3.1453 2.3877 5.8094 19 1 2.5376 3.2065 6.1943 20 6 3.7575 1.5803 6.9558 21 6 4.2479 2.9211 4.8662 22 1 4.4538 3.9699 5.0800 23 8 5.4391 2.1442 5.0063 24 6 3.6740 2.7679 3.4455 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 0.5139 -0.8899 27 1 -0.3633 -1.0276 0.0005 28 1 1.8933 -0.5138 -0.8900 29 1 1.8933 -0.5139 0.8900 30 1 1.5817 1.6877 -2.0284 31 1 2.0955 3.1410 -1.1384 32 1 3.6754 3.5170 -4.4436 33 1 2.6228 0.4187 2.5299 34 1 0.9444 1.0115 2.5302 35 1 2.7826 0.4979 4.7711 36 1 1.2915 1.3666 5.2602 37 1 4.4328 2.2164 7.5281 38 1 2.9636 1.2146 7.6071 39 1 4.3122 0.7347 6.5491 40 1 6.1594 2.4198 4.4229 41 1 3.6263 3.7412 2.9572 42 1 4.2972 2.0881 2.8645 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000351959322.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:54:12 Heat of formation + Delta-G solvation = -77.771127 kcal Electronic energy + Delta-G solvation = -21854.081325 eV Core-core repulsion = 18641.267846 eV Total energy + Delta-G solvation = -3212.813478 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 270.173 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -39.89953 -38.51845 -35.73339 -35.14661 -32.98518 -32.59199 -30.09502 -29.27792 -27.76650 -26.50508 -24.64989 -23.03990 -22.46097 -21.13472 -20.15761 -18.23460 -17.50426 -16.59519 -16.31156 -15.79057 -15.42235 -14.91197 -14.56259 -14.33403 -14.13241 -13.77966 -13.39497 -13.21376 -12.81087 -12.56237 -12.43787 -12.16577 -12.05233 -11.92340 -11.70560 -11.40072 -11.22357 -11.11330 -10.95868 -10.89931 -10.73397 -10.54541 -10.43863 -10.11622 -9.93388 -9.63903 -8.82638 -8.44704 -8.21326 -7.65087 -6.05240 -4.10125 3.28250 3.34786 3.37702 3.44915 3.71387 4.14303 4.30543 4.43025 4.58068 4.72907 4.93343 5.13845 5.28133 5.29472 5.32158 5.43692 5.47579 5.52046 5.54789 5.61647 5.66465 5.73781 5.78522 5.83063 6.03916 6.03989 6.10902 6.22983 6.30827 6.37736 6.48883 6.93965 6.96811 7.14927 7.45519 7.56151 7.63557 7.91457 8.23058 8.43620 8.89694 9.11863 9.55088 11.02744 Molecular weight = 270.17amu Principal moments of inertia in cm(-1) A = 0.019293 B = 0.005246 C = 0.004445 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1450.984255 B = 5336.483619 C = 6297.247806 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.106 3.894 3 N -0.598 5.598 4 C 0.247 3.753 5 C -0.525 4.525 6 H 0.055 0.945 7 C 0.061 3.939 8 N -0.894 5.894 9 Si 0.897 3.103 10 H -0.280 1.280 11 H -0.285 1.285 12 H -0.275 1.275 13 C 0.506 3.494 14 O -0.529 6.529 15 C 0.027 3.973 16 N -0.498 5.498 17 C 0.038 3.962 18 C -0.088 4.088 19 H 0.090 0.910 20 C -0.129 4.129 21 C 0.090 3.910 22 H 0.065 0.935 23 O -0.565 6.565 24 C 0.016 3.984 25 H 0.051 0.949 26 H 0.061 0.939 27 H 0.059 0.941 28 H 0.082 0.918 29 H 0.062 0.938 30 H 0.031 0.969 31 H 0.043 0.957 32 H 0.263 0.737 33 H 0.058 0.942 34 H 0.098 0.902 35 H 0.047 0.953 36 H 0.082 0.918 37 H 0.055 0.945 38 H 0.050 0.950 39 H 0.062 0.938 40 H 0.378 0.622 41 H 0.105 0.895 42 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.479 -5.929 16.175 17.405 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.018 4.018 3 N -0.330 5.330 4 C 0.128 3.872 5 C -0.564 4.564 6 H 0.074 0.926 7 C -0.141 4.141 8 N -0.533 5.533 9 Si 0.725 3.275 10 H -0.206 1.206 11 H -0.211 1.211 12 H -0.200 1.200 13 C 0.292 3.708 14 O -0.406 6.406 15 C -0.104 4.104 16 N -0.223 5.223 17 C -0.090 4.090 18 C -0.107 4.107 19 H 0.109 0.891 20 C -0.187 4.187 21 C 0.030 3.970 22 H 0.083 0.917 23 O -0.371 6.371 24 C -0.112 4.112 25 H 0.070 0.930 26 H 0.080 0.920 27 H 0.078 0.922 28 H 0.100 0.900 29 H 0.080 0.920 30 H 0.049 0.951 31 H 0.061 0.939 32 H 0.073 0.927 33 H 0.075 0.925 34 H 0.116 0.884 35 H 0.065 0.935 36 H 0.100 0.900 37 H 0.074 0.926 38 H 0.069 0.931 39 H 0.081 0.919 40 H 0.226 0.774 41 H 0.123 0.877 42 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -3.029 -5.101 16.396 17.436 hybrid contribution 1.805 -0.635 -1.048 2.182 sum -1.224 -5.736 15.347 16.430 Atomic orbital electron populations 1.22220 0.96722 1.01387 1.02414 1.21414 0.93593 0.84275 1.02542 1.48248 1.63915 1.13195 1.07677 1.19251 0.96163 0.93662 0.78095 1.21420 0.96948 1.31806 1.06263 0.92644 1.24926 0.97794 0.94925 0.96407 1.69931 1.35672 1.33414 1.14306 0.86517 0.84732 0.77695 0.78568 1.20643 1.21065 1.19994 1.20119 0.78774 0.87083 0.84861 1.90634 1.45349 1.17802 1.86810 1.22329 1.02602 0.94672 0.90813 1.64705 1.26770 1.30099 1.00685 1.23379 1.00162 0.95682 0.89797 1.22121 0.94917 0.98643 0.94970 0.89132 1.21480 0.99990 1.00407 0.96824 1.22803 0.85351 0.94140 0.94692 0.91746 1.86470 1.24078 1.60601 1.65933 1.23753 0.88771 1.03063 0.95632 0.92993 0.91993 0.92197 0.89970 0.91973 0.95071 0.93880 0.92718 0.92462 0.88384 0.93486 0.89990 0.92594 0.93120 0.91909 0.77420 0.87650 0.93103 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.27 10.24 37.16 0.38 -1.89 16 2 C 0.11 1.70 5.93 -4.04 -0.02 1.68 16 3 N -0.60 -12.62 2.46 -175.06 -0.43 -13.05 16 4 C 0.25 6.46 5.16 -5.19 -0.03 6.44 16 5 C -0.53 -14.85 9.39 -34.44 -0.32 -15.17 16 6 H 0.06 1.57 7.81 -52.49 -0.41 1.16 16 7 C 0.06 1.75 5.46 -17.82 -0.10 1.66 16 8 N -0.89 -26.57 13.29 55.43 0.74 -25.83 16 9 Si 0.90 21.80 29.54 -169.99 -5.02 16.78 16 10 H -0.28 -6.62 7.11 56.52 0.40 -6.21 16 11 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 12 H -0.27 -6.66 7.11 56.52 0.40 -6.25 16 13 C 0.51 10.57 7.25 -10.99 -0.08 10.49 16 14 O -0.53 -13.12 13.38 5.56 0.07 -13.05 16 15 C 0.03 0.43 4.04 -4.98 -0.02 0.41 16 16 N -0.50 -7.75 5.26 -231.70 -1.22 -8.97 16 17 C 0.04 0.46 6.00 -1.90 -0.01 0.45 16 18 C -0.09 -1.00 3.64 -88.76 -0.32 -1.33 16 19 H 0.09 0.97 8.14 -51.93 -0.42 0.55 16 20 C -0.13 -1.31 8.57 37.16 0.32 -0.99 16 21 C 0.09 1.15 4.22 -25.38 -0.11 1.04 16 22 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16 23 O -0.57 -6.97 11.68 -35.23 -0.41 -7.39 16 24 C 0.02 0.25 4.89 -2.63 -0.01 0.24 16 25 H 0.05 0.67 7.22 -51.93 -0.38 0.29 16 26 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 27 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 28 H 0.08 1.37 8.07 -51.93 -0.42 0.95 16 29 H 0.06 0.84 6.44 -51.93 -0.33 0.51 16 30 H 0.03 0.83 8.07 -51.93 -0.42 0.41 16 31 H 0.04 1.28 7.42 -51.93 -0.39 0.89 16 32 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 33 H 0.06 0.84 7.15 -51.93 -0.37 0.47 16 34 H 0.10 1.35 7.19 -51.93 -0.37 0.98 16 35 H 0.05 0.58 7.73 -51.93 -0.40 0.18 16 36 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16 37 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 38 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 39 H 0.06 0.71 7.49 -51.93 -0.39 0.32 16 40 H 0.38 3.56 9.11 45.56 0.42 3.98 16 41 H 0.11 1.97 6.76 -51.93 -0.35 1.62 16 42 H 0.05 0.90 7.41 -51.93 -0.38 0.51 16 LS Contribution 334.88 15.07 5.05 5.05 Total: -1.00 -33.03 334.88 -7.84 -40.88 By element: Atomic # 1 Polarization: 8.86 SS G_CDS: -6.29 Total: 2.57 kcal Atomic # 6 Polarization: 3.34 SS G_CDS: -0.33 Total: 3.02 kcal Atomic # 7 Polarization: -46.94 SS G_CDS: -0.91 Total: -47.85 kcal Atomic # 8 Polarization: -20.10 SS G_CDS: -0.34 Total: -20.44 kcal Atomic # 14 Polarization: 21.80 SS G_CDS: -5.02 Total: 16.78 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -33.03 -7.84 -40.88 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000351959322.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.894 kcal (2) G-P(sol) polarization free energy of solvation -33.033 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.927 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.844 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.877 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.771 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds