Wall clock time and date at job start Mon Mar 30 2020 00:54:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46502 * 109.47198 * 2 1 4 4 C 1.46498 * 119.99857 * 270.00251 * 3 2 1 5 5 C 1.50702 * 109.47105 * 269.99921 * 4 3 2 6 6 H 1.07998 * 119.99631 * 0.02562 * 5 4 3 7 7 C 1.37872 * 119.99903 * 180.02562 * 5 4 3 8 8 N 1.31510 * 120.00350 * 359.97438 * 7 5 4 9 9 Si 1.86802 * 119.99811 * 179.97438 * 7 5 4 10 10 H 1.48508 * 109.47215 * 89.99924 * 9 7 5 11 11 H 1.48504 * 109.47316 * 209.99819 * 9 7 5 12 12 H 1.48500 * 109.47320 * 330.00279 * 9 7 5 13 13 C 1.34775 * 119.99898 * 89.99961 * 3 2 1 14 14 O 1.21281 * 120.00112 * 180.02562 * 13 3 2 15 15 C 1.50700 * 120.00169 * 0.02562 * 13 3 2 16 16 N 1.46896 * 109.47289 * 179.97438 * 15 13 3 17 17 C 1.48529 * 111.00447 * 189.99579 * 16 15 13 18 18 C 1.54938 * 103.22998 * 159.71925 * 17 16 15 19 19 H 1.08991 * 110.72113 * 80.94963 * 18 17 16 20 20 C 1.53002 * 110.72215 * 204.23396 * 18 17 16 21 21 C 1.54593 * 102.92109 * 322.58925 * 18 17 16 22 22 H 1.08993 * 110.31164 * 140.97421 * 21 18 17 23 23 O 1.42903 * 110.31063 * 263.04388 * 21 18 17 24 24 C 1.48126 * 111.00788 * 307.45705 * 16 15 13 25 25 H 1.08999 * 109.47002 * 300.00089 * 1 2 3 26 26 H 1.08999 * 109.47402 * 59.99669 * 1 2 3 27 27 H 1.08997 * 109.47238 * 180.02562 * 1 2 3 28 28 H 1.08999 * 109.47002 * 239.99911 * 2 1 3 29 29 H 1.09002 * 109.46914 * 120.00300 * 2 1 3 30 30 H 1.08998 * 109.47401 * 29.99669 * 4 3 2 31 31 H 1.09000 * 109.46963 * 149.99732 * 4 3 2 32 32 H 0.97004 * 120.00232 * 180.02562 * 8 7 5 33 33 H 1.08993 * 109.47345 * 59.99751 * 15 13 3 34 34 H 1.09003 * 109.46802 * 299.99407 * 15 13 3 35 35 H 1.09001 * 110.66494 * 41.28426 * 17 16 15 36 36 H 1.09005 * 110.66869 * 278.15709 * 17 16 15 37 37 H 1.09001 * 109.46758 * 173.50271 * 20 18 17 38 38 H 1.09004 * 109.46597 * 293.49598 * 20 18 17 39 39 H 1.09000 * 109.47541 * 53.49915 * 20 18 17 40 40 H 0.96700 * 114.00311 * 178.61309 * 23 21 18 41 41 H 1.08999 * 109.99906 * 94.86315 * 24 16 15 42 42 H 1.09004 * 109.93837 * 333.50455 * 24 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2625 2.0718 -1.2687 5 6 3.6858 1.8350 -1.7038 6 1 4.3426 1.2302 -1.0962 7 6 4.1493 2.3904 -2.8775 8 7 3.3493 3.1265 -3.6176 9 14 5.9137 2.0975 -3.4164 10 1 5.9776 0.8767 -4.2597 11 1 6.3927 3.2652 -4.1990 12 1 6.7736 1.9175 -2.2192 13 6 2.2430 2.0165 1.1672 14 8 2.6468 3.1601 1.1672 15 6 1.9924 1.3060 2.4723 16 7 2.3110 2.2058 3.5889 17 6 2.3078 1.4729 4.8808 18 6 3.1453 2.3877 5.8094 19 1 2.5376 3.2065 6.1943 20 6 3.7575 1.5803 6.9558 21 6 4.2479 2.9211 4.8662 22 1 4.4538 3.9699 5.0800 23 8 5.4391 2.1442 5.0063 24 6 3.6740 2.7679 3.4455 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 0.5139 -0.8899 27 1 -0.3633 -1.0276 0.0005 28 1 1.8933 -0.5138 -0.8900 29 1 1.8933 -0.5139 0.8900 30 1 1.5817 1.6877 -2.0284 31 1 2.0955 3.1410 -1.1384 32 1 3.6754 3.5170 -4.4436 33 1 2.6228 0.4187 2.5299 34 1 0.9444 1.0115 2.5302 35 1 2.7826 0.4979 4.7711 36 1 1.2915 1.3666 5.2602 37 1 4.4328 2.2164 7.5281 38 1 2.9636 1.2146 7.6071 39 1 4.3122 0.7347 6.5491 40 1 6.1594 2.4198 4.4229 41 1 3.6263 3.7412 2.9572 42 1 4.2972 2.0881 2.8645 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000351959322.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:54:11 Heat of formation + Delta-G solvation = -103.569673 kcal Electronic energy + Delta-G solvation = -21855.200033 eV Core-core repulsion = 18641.267846 eV Total energy + Delta-G solvation = -3213.932187 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 270.173 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.25022 -39.87246 -37.09154 -36.53620 -34.94869 -33.77629 -31.63677 -30.52955 -29.27017 -27.95966 -25.90402 -24.70097 -23.93355 -22.38052 -21.14310 -19.78327 -18.64452 -18.54210 -17.90132 -17.33116 -16.65361 -16.52158 -16.09757 -15.58173 -15.45694 -14.93518 -14.74512 -14.59566 -14.14345 -14.05237 -13.63420 -13.54266 -13.31822 -13.20431 -13.08923 -12.99411 -12.73959 -12.67318 -12.49874 -12.18466 -12.04962 -11.89150 -11.84645 -11.73864 -11.42271 -10.97108 -10.66133 -10.46152 -9.46723 -9.40530 -8.24040 -6.39283 1.34205 1.36978 1.47140 1.82014 2.21089 2.39369 2.94740 3.05234 3.32952 3.54658 3.59322 3.87216 3.98385 4.06513 4.24315 4.28783 4.33925 4.44707 4.52977 4.61908 4.64828 4.69560 4.83000 4.85579 4.92742 4.97476 5.04150 5.07280 5.16187 5.20388 5.24428 5.38167 5.49303 5.56273 5.75997 5.84167 5.94593 6.04990 6.68389 6.75513 6.79499 7.26835 7.49159 8.82976 Molecular weight = 270.17amu Principal moments of inertia in cm(-1) A = 0.019293 B = 0.005246 C = 0.004445 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1450.984255 B = 5336.483619 C = 6297.247806 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.099 3.901 3 N -0.604 5.604 4 C 0.264 3.736 5 C -0.542 4.542 6 H 0.050 0.950 7 C 0.009 3.991 8 N -0.928 5.928 9 Si 0.967 3.033 10 H -0.263 1.263 11 H -0.280 1.280 12 H -0.274 1.274 13 C 0.494 3.506 14 O -0.580 6.580 15 C 0.042 3.958 16 N -0.514 5.514 17 C 0.040 3.960 18 C -0.086 4.086 19 H 0.101 0.899 20 C -0.122 4.122 21 C 0.095 3.905 22 H 0.071 0.929 23 O -0.569 6.569 24 C 0.022 3.978 25 H 0.060 0.940 26 H 0.038 0.962 27 H 0.096 0.904 28 H 0.072 0.928 29 H 0.096 0.904 30 H 0.021 0.979 31 H -0.005 1.005 32 H 0.267 0.733 33 H 0.076 0.924 34 H 0.128 0.872 35 H 0.051 0.949 36 H 0.105 0.895 37 H 0.056 0.944 38 H 0.071 0.929 39 H 0.050 0.950 40 H 0.389 0.611 41 H 0.067 0.933 42 H 0.027 0.973 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.440 -8.056 18.130 19.989 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.023 4.023 3 N -0.336 5.336 4 C 0.143 3.857 5 C -0.580 4.580 6 H 0.069 0.931 7 C -0.190 4.190 8 N -0.568 5.568 9 Si 0.792 3.208 10 H -0.188 1.188 11 H -0.206 1.206 12 H -0.198 1.198 13 C 0.283 3.717 14 O -0.460 6.460 15 C -0.088 4.088 16 N -0.239 5.239 17 C -0.087 4.087 18 C -0.104 4.104 19 H 0.119 0.881 20 C -0.179 4.179 21 C 0.035 3.965 22 H 0.089 0.911 23 O -0.377 6.377 24 C -0.107 4.107 25 H 0.079 0.921 26 H 0.057 0.943 27 H 0.115 0.885 28 H 0.090 0.910 29 H 0.115 0.885 30 H 0.039 0.961 31 H 0.013 0.987 32 H 0.076 0.924 33 H 0.094 0.906 34 H 0.146 0.854 35 H 0.069 0.931 36 H 0.123 0.877 37 H 0.075 0.925 38 H 0.090 0.910 39 H 0.069 0.931 40 H 0.238 0.762 41 H 0.086 0.914 42 H 0.046 0.954 Dipole moment (debyes) X Y Z Total from point charges -3.007 -7.279 18.368 19.985 hybrid contribution 1.763 0.046 -1.662 2.423 sum -1.245 -7.233 16.706 18.247 Atomic orbital electron populations 1.22148 0.94391 1.03560 1.01736 1.21747 0.95481 0.81356 1.03735 1.48280 1.64062 1.15071 1.06167 1.18670 0.95237 0.91446 0.80357 1.21670 0.97829 1.31962 1.06560 0.93126 1.25849 1.02381 0.94417 0.96397 1.70053 1.37809 1.34158 1.14775 0.85422 0.78970 0.78242 0.78197 1.18782 1.20568 1.19839 1.21124 0.77479 0.86771 0.86355 1.90618 1.47433 1.20260 1.87700 1.22255 1.04634 0.94229 0.87729 1.64676 1.26211 1.31111 1.01948 1.23493 1.01761 0.95496 0.87900 1.22195 0.94265 0.99038 0.94952 0.88118 1.21420 1.00455 0.99671 0.96389 1.22754 0.85940 0.94869 0.92932 0.91061 1.86446 1.24251 1.60761 1.66194 1.23554 0.89310 1.00575 0.97220 0.92061 0.94303 0.88505 0.90989 0.88537 0.96126 0.98671 0.92386 0.90645 0.85402 0.93062 0.87654 0.92460 0.91045 0.93112 0.76193 0.91417 0.95430 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.97 10.24 71.98 0.74 -3.23 16 2 C 0.10 3.05 5.93 86.38 0.51 3.56 16 3 N -0.60 -26.00 2.46 -826.15 -2.03 -28.03 16 4 C 0.26 14.53 5.16 85.63 0.44 14.97 16 5 C -0.54 -31.60 9.39 25.60 0.24 -31.36 16 6 H 0.05 2.93 7.81 -2.91 -0.02 2.91 16 7 C 0.01 0.50 5.46 84.65 0.46 0.96 16 8 N -0.93 -56.74 13.29 21.44 0.28 -56.45 16 9 Si 0.97 45.19 29.54 68.60 2.03 47.22 16 10 H -0.26 -11.50 7.11 99.48 0.71 -10.80 16 11 H -0.28 -12.81 7.11 99.48 0.71 -12.10 16 12 H -0.27 -12.61 7.11 99.48 0.71 -11.90 16 13 C 0.49 21.03 7.25 87.66 0.64 21.67 16 14 O -0.58 -30.36 13.38 -3.03 -0.04 -30.40 16 15 C 0.04 1.27 4.04 85.56 0.35 1.61 16 16 N -0.51 -15.36 5.26 -886.96 -4.67 -20.03 16 17 C 0.04 0.86 6.00 86.65 0.52 1.38 16 18 C -0.09 -1.75 3.64 -9.59 -0.03 -1.78 16 19 H 0.10 1.87 8.14 -2.39 -0.02 1.85 16 20 C -0.12 -2.09 8.57 71.98 0.62 -1.48 16 21 C 0.09 2.34 4.22 31.47 0.13 2.47 16 22 H 0.07 1.65 8.14 -2.39 -0.02 1.63 16 23 O -0.57 -13.39 11.68 -148.98 -1.74 -15.13 16 24 C 0.02 0.72 4.89 86.40 0.42 1.14 16 25 H 0.06 1.41 7.22 -2.39 -0.02 1.39 16 26 H 0.04 1.13 8.14 -2.39 -0.02 1.11 16 27 H 0.10 1.71 8.14 -2.39 -0.02 1.69 16 28 H 0.07 2.36 8.07 -2.39 -0.02 2.34 16 29 H 0.10 2.31 6.44 -2.39 -0.02 2.29 16 30 H 0.02 1.16 8.07 -2.39 -0.02 1.14 16 31 H 0.00 -0.31 7.42 -2.39 -0.02 -0.33 16 32 H 0.27 15.28 8.31 -92.71 -0.77 14.51 16 33 H 0.08 2.01 7.15 -2.39 -0.02 1.99 16 34 H 0.13 3.06 7.19 -2.39 -0.02 3.05 16 35 H 0.05 1.08 7.73 -2.39 -0.02 1.06 16 36 H 0.11 1.80 8.14 -2.38 -0.02 1.78 16 37 H 0.06 0.98 8.14 -2.39 -0.02 0.96 16 38 H 0.07 0.94 8.14 -2.38 -0.02 0.92 16 39 H 0.05 1.01 7.49 -2.39 -0.02 0.99 16 40 H 0.39 7.12 9.11 -74.06 -0.67 6.45 16 41 H 0.07 2.70 6.76 -2.39 -0.02 2.69 16 42 H 0.03 1.00 7.41 -2.38 -0.02 0.98 16 Total: -1.00 -75.50 334.88 -0.81 -76.31 By element: Atomic # 1 Polarization: 16.27 SS G_CDS: 0.32 Total: 16.59 kcal Atomic # 6 Polarization: 4.89 SS G_CDS: 5.03 Total: 9.92 kcal Atomic # 7 Polarization: -98.09 SS G_CDS: -6.41 Total: -104.51 kcal Atomic # 8 Polarization: -43.75 SS G_CDS: -1.78 Total: -45.53 kcal Atomic # 14 Polarization: 45.19 SS G_CDS: 2.03 Total: 47.22 kcal Total: -75.50 -0.81 -76.31 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000351959322.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.256 kcal (2) G-P(sol) polarization free energy of solvation -75.501 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.757 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.813 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.314 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.570 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds