Wall clock time and date at job start Mon Mar 30 2020 00:54:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46499 * 109.47147 * 2 1 4 4 C 1.46506 * 119.99936 * 89.99619 * 3 2 1 5 5 C 1.50703 * 109.46877 * 90.00092 * 4 3 2 6 6 H 1.08005 * 119.99817 * 0.02562 * 5 4 3 7 7 C 1.37871 * 120.00081 * 179.97438 * 5 4 3 8 8 N 1.31520 * 119.99848 * 0.02562 * 7 5 4 9 9 Si 1.86798 * 120.00321 * 179.97438 * 7 5 4 10 10 H 1.48504 * 109.46938 * 0.02562 * 9 7 5 11 11 H 1.48501 * 109.47198 * 120.00527 * 9 7 5 12 12 H 1.48498 * 109.47360 * 240.00281 * 9 7 5 13 13 C 1.34773 * 120.00036 * 270.27655 * 3 2 1 14 14 O 1.21281 * 120.00220 * 179.72597 * 13 3 2 15 15 C 1.50706 * 120.00080 * 359.72107 * 13 3 2 16 16 N 1.46889 * 109.47109 * 180.02562 * 15 13 3 17 17 C 1.48563 * 110.99839 * 185.29301 * 16 15 13 18 18 C 1.54382 * 104.59535 * 200.95722 * 17 16 15 19 19 H 1.08998 * 110.41092 * 264.91048 * 18 17 16 20 20 C 1.53003 * 110.32125 * 142.74938 * 18 17 16 21 21 C 1.54261 * 105.05825 * 23.85371 * 18 17 16 22 22 H 1.08998 * 110.40814 * 241.05799 * 21 18 17 23 23 O 1.42896 * 110.32294 * 118.89902 * 21 18 17 24 24 C 1.48560 * 111.00457 * 69.87792 * 16 15 13 25 25 H 1.09003 * 109.47272 * 300.00321 * 1 2 3 26 26 H 1.08997 * 109.47273 * 60.00010 * 1 2 3 27 27 H 1.09005 * 109.47395 * 180.02562 * 1 2 3 28 28 H 1.08994 * 109.47531 * 239.99672 * 2 1 3 29 29 H 1.09005 * 109.46544 * 119.99607 * 2 1 3 30 30 H 1.09000 * 109.46803 * 209.99571 * 4 3 2 31 31 H 1.09000 * 109.47214 * 330.00364 * 4 3 2 32 32 H 0.96998 * 119.99944 * 179.97438 * 8 7 5 33 33 H 1.09004 * 109.46762 * 300.00389 * 15 13 3 34 34 H 1.08998 * 109.46924 * 59.99727 * 15 13 3 35 35 H 1.09000 * 110.41154 * 319.73673 * 17 16 15 36 36 H 1.09002 * 110.41399 * 82.18115 * 17 16 15 37 37 H 1.09005 * 109.47012 * 304.36116 * 20 18 17 38 38 H 1.08996 * 109.47117 * 64.36354 * 20 18 17 39 39 H 1.09002 * 109.46557 * 184.36487 * 20 18 17 40 40 H 0.96700 * 114.00224 * 182.90814 * 23 21 18 41 41 H 1.09007 * 110.40554 * 277.81680 * 24 16 15 42 42 H 1.08998 * 110.40891 * 40.25583 * 24 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2624 2.0718 1.2688 5 6 3.6857 1.8350 1.7039 6 1 4.3428 1.2309 1.0958 7 6 4.1493 2.3905 2.8775 8 7 3.3493 3.1266 3.6176 9 14 5.9133 2.0964 3.4172 10 1 6.6007 1.2403 2.4172 11 1 6.6214 3.3972 3.5249 12 1 5.9203 1.4182 4.7383 13 6 2.2377 2.0184 -1.1671 14 8 2.6372 3.1635 -1.1672 15 6 1.9865 1.3080 -2.4723 16 7 2.2990 2.2100 -3.5888 17 6 1.9435 1.5887 -4.8906 18 6 2.7864 2.3569 -5.9313 19 1 2.2038 3.1677 -6.3685 20 6 3.2759 1.4056 -7.0251 21 6 3.9826 2.9233 -5.1389 22 1 3.9880 4.0122 -5.1855 23 8 5.2096 2.3995 -5.6507 24 6 3.7619 2.4497 -3.6863 25 1 -0.3634 0.5139 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3634 -1.0277 0.0005 28 1 1.8934 -0.5138 -0.8899 29 1 1.8933 -0.5138 0.8901 30 1 2.0955 3.1411 1.1383 31 1 1.5816 1.6877 2.0284 32 1 3.6753 3.5170 4.4435 33 1 2.6203 0.4232 -2.5321 34 1 0.9397 1.0094 -2.5279 35 1 2.2086 0.5315 -4.8923 36 1 0.8802 1.7153 -5.0945 37 1 3.8242 0.5805 -6.5704 38 1 2.4206 1.0140 -7.5756 39 1 3.9319 1.9449 -7.7085 40 1 5.9937 2.6861 -5.1626 41 1 4.0677 3.2246 -2.9832 42 1 4.3115 1.5272 -3.4994 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000351959324.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:54:16 Heat of formation + Delta-G solvation = -78.908767 kcal Electronic energy + Delta-G solvation = -21726.743440 eV Core-core repulsion = 18513.880630 eV Total energy + Delta-G solvation = -3212.862810 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 270.173 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -39.83974 -38.56579 -35.84783 -35.15522 -32.99775 -32.60222 -30.08782 -29.26545 -27.75304 -26.50170 -24.73138 -23.03017 -22.51454 -21.27097 -20.05746 -18.19771 -17.49882 -16.63573 -16.35018 -15.89940 -15.45190 -15.00008 -14.57404 -14.23100 -14.03848 -13.84230 -13.46871 -13.29689 -12.74633 -12.59789 -12.41445 -12.35738 -12.07385 -11.94477 -11.71981 -11.30751 -11.20259 -11.13366 -11.04519 -10.88832 -10.72303 -10.54686 -10.48095 -10.11664 -9.92497 -9.60878 -8.91906 -8.43859 -8.30585 -7.62833 -6.04303 -4.09014 3.28628 3.35907 3.39027 3.47639 3.64476 4.07808 4.38707 4.44045 4.51396 4.70197 4.90700 5.12758 5.24004 5.27073 5.30323 5.37363 5.40511 5.49030 5.52205 5.57409 5.65485 5.68687 5.76077 5.80614 5.99429 6.03382 6.05548 6.18276 6.23555 6.29366 6.48529 6.84480 6.88324 7.14449 7.47148 7.57962 7.58615 7.92787 8.24428 8.46191 8.91531 9.15540 9.56283 11.03727 Molecular weight = 270.17amu Principal moments of inertia in cm(-1) A = 0.019910 B = 0.004992 C = 0.004274 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1405.982653 B = 5607.361998 C = 6548.991426 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.107 3.893 3 N -0.600 5.600 4 C 0.247 3.753 5 C -0.524 4.524 6 H 0.056 0.944 7 C 0.061 3.939 8 N -0.894 5.894 9 Si 0.897 3.103 10 H -0.274 1.274 11 H -0.283 1.283 12 H -0.283 1.283 13 C 0.508 3.492 14 O -0.525 6.525 15 C 0.026 3.974 16 N -0.487 5.487 17 C 0.034 3.966 18 C -0.089 4.089 19 H 0.085 0.915 20 C -0.127 4.127 21 C 0.101 3.899 22 H 0.068 0.932 23 O -0.564 6.564 24 C 0.003 3.997 25 H 0.061 0.939 26 H 0.050 0.950 27 H 0.059 0.941 28 H 0.061 0.939 29 H 0.082 0.918 30 H 0.043 0.957 31 H 0.031 0.969 32 H 0.262 0.738 33 H 0.058 0.942 34 H 0.098 0.902 35 H 0.046 0.954 36 H 0.083 0.917 37 H 0.057 0.943 38 H 0.049 0.951 39 H 0.059 0.941 40 H 0.378 0.622 41 H 0.101 0.899 42 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.002 -6.385 -16.541 17.983 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.018 4.018 3 N -0.333 5.333 4 C 0.128 3.872 5 C -0.563 4.563 6 H 0.074 0.926 7 C -0.141 4.141 8 N -0.533 5.533 9 Si 0.725 3.275 10 H -0.199 1.199 11 H -0.209 1.209 12 H -0.210 1.210 13 C 0.293 3.707 14 O -0.401 6.401 15 C -0.106 4.106 16 N -0.211 5.211 17 C -0.094 4.094 18 C -0.108 4.108 19 H 0.104 0.896 20 C -0.185 4.185 21 C 0.042 3.958 22 H 0.086 0.914 23 O -0.369 6.369 24 C -0.125 4.125 25 H 0.080 0.920 26 H 0.069 0.931 27 H 0.078 0.922 28 H 0.080 0.920 29 H 0.100 0.900 30 H 0.061 0.939 31 H 0.049 0.951 32 H 0.072 0.928 33 H 0.076 0.924 34 H 0.116 0.884 35 H 0.064 0.936 36 H 0.101 0.899 37 H 0.076 0.924 38 H 0.068 0.932 39 H 0.079 0.921 40 H 0.225 0.775 41 H 0.120 0.880 42 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -3.498 -5.452 -16.665 17.879 hybrid contribution 1.674 -0.769 0.896 2.049 sum -1.824 -6.222 -15.768 17.049 Atomic orbital electron populations 1.22228 0.96796 1.01354 1.02390 1.21400 0.93524 0.84354 1.02503 1.48253 1.64216 1.13113 1.07688 1.19252 0.96161 0.93677 0.78105 1.21467 0.96947 1.31723 1.06196 0.92570 1.24933 0.97793 0.94958 0.96424 1.69946 1.35552 1.33516 1.14331 0.86462 0.84715 0.78030 0.78311 1.19889 1.20878 1.20963 1.20066 0.78894 0.87069 0.84652 1.90644 1.45044 1.17588 1.86868 1.22283 1.02520 0.94407 0.91342 1.65128 1.14706 1.40357 1.00940 1.23277 1.00335 0.96650 0.89142 1.21930 0.94619 0.98706 0.95561 0.89621 1.21494 1.00190 0.99157 0.97669 1.22557 0.84494 0.97029 0.91731 0.91392 1.86500 1.16125 1.75299 1.58947 1.23948 0.89007 1.01895 0.97654 0.91980 0.93057 0.92222 0.92045 0.89971 0.93880 0.95089 0.92791 0.92384 0.88438 0.93579 0.89875 0.92403 0.93241 0.92147 0.77467 0.88043 0.93337 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.26 10.24 37.16 0.38 -1.88 16 2 C 0.11 1.70 5.93 -4.04 -0.02 1.68 16 3 N -0.60 -12.68 2.46 -175.05 -0.43 -13.11 16 4 C 0.25 6.48 5.17 -5.19 -0.03 6.45 16 5 C -0.52 -14.86 9.39 -34.44 -0.32 -15.19 16 6 H 0.06 1.60 7.81 -52.48 -0.41 1.19 16 7 C 0.06 1.74 5.46 -17.82 -0.10 1.64 16 8 N -0.89 -26.64 13.29 55.43 0.74 -25.90 16 9 Si 0.90 21.84 29.54 -169.99 -5.02 16.82 16 10 H -0.27 -6.58 7.11 56.52 0.40 -6.18 16 11 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 12 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 13 C 0.51 10.65 7.48 -10.98 -0.08 10.57 16 14 O -0.53 -13.27 14.42 5.56 0.08 -13.19 16 15 C 0.03 0.41 3.85 -4.98 -0.02 0.39 16 16 N -0.49 -7.46 5.06 -231.41 -1.17 -8.64 16 17 C 0.03 0.40 6.03 -2.18 -0.01 0.39 16 18 C -0.09 -1.00 3.65 -89.23 -0.33 -1.32 16 19 H 0.09 0.89 8.14 -51.93 -0.42 0.47 16 20 C -0.13 -1.28 8.16 37.16 0.30 -0.98 16 21 C 0.10 1.25 4.40 -25.35 -0.11 1.14 16 22 H 0.07 0.83 8.14 -51.93 -0.42 0.40 16 23 O -0.56 -6.43 11.56 -35.23 -0.41 -6.84 16 24 C 0.00 0.05 5.53 -2.19 -0.01 0.04 16 25 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 26 H 0.05 0.65 7.20 -51.93 -0.37 0.28 16 27 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 28 H 0.06 0.82 6.45 -51.93 -0.33 0.49 16 29 H 0.08 1.37 8.07 -51.93 -0.42 0.95 16 30 H 0.04 1.28 7.41 -51.93 -0.38 0.90 16 31 H 0.03 0.82 8.07 -51.93 -0.42 0.40 16 32 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 33 H 0.06 0.83 7.15 -51.93 -0.37 0.46 16 34 H 0.10 1.31 7.15 -51.93 -0.37 0.94 16 35 H 0.05 0.51 7.68 -51.93 -0.40 0.11 16 36 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16 37 H 0.06 0.63 7.85 -51.93 -0.41 0.23 16 38 H 0.05 0.42 8.14 -51.93 -0.42 -0.01 16 39 H 0.06 0.62 7.90 -51.93 -0.41 0.21 16 40 H 0.38 3.11 9.11 45.56 0.41 3.52 16 41 H 0.10 1.83 6.91 -51.93 -0.36 1.47 16 42 H 0.05 0.74 7.76 -51.93 -0.40 0.34 16 LS Contribution 336.60 15.07 5.07 5.07 Total: -1.00 -33.53 336.60 -7.81 -41.34 By element: Atomic # 1 Polarization: 7.85 SS G_CDS: -6.32 Total: 1.53 kcal Atomic # 6 Polarization: 3.28 SS G_CDS: -0.35 Total: 2.93 kcal Atomic # 7 Polarization: -46.79 SS G_CDS: -0.86 Total: -47.65 kcal Atomic # 8 Polarization: -19.71 SS G_CDS: -0.33 Total: -20.03 kcal Atomic # 14 Polarization: 21.84 SS G_CDS: -5.02 Total: 16.82 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -33.53 -7.81 -41.34 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000351959324.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.571 kcal (2) G-P(sol) polarization free energy of solvation -33.526 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.097 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.812 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.338 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.909 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds