Wall clock time and date at job start Mon Mar 30 2020 00:54:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46499 * 109.47147 * 2 1 4 4 C 1.46506 * 119.99936 * 89.99619 * 3 2 1 5 5 C 1.50703 * 109.46877 * 90.00092 * 4 3 2 6 6 H 1.08005 * 119.99817 * 0.02562 * 5 4 3 7 7 C 1.37871 * 120.00081 * 179.97438 * 5 4 3 8 8 N 1.31520 * 119.99848 * 0.02562 * 7 5 4 9 9 Si 1.86798 * 120.00321 * 179.97438 * 7 5 4 10 10 H 1.48504 * 109.46938 * 0.02562 * 9 7 5 11 11 H 1.48501 * 109.47198 * 120.00527 * 9 7 5 12 12 H 1.48498 * 109.47360 * 240.00281 * 9 7 5 13 13 C 1.34773 * 120.00036 * 270.27655 * 3 2 1 14 14 O 1.21281 * 120.00220 * 179.72597 * 13 3 2 15 15 C 1.50706 * 120.00080 * 359.72107 * 13 3 2 16 16 N 1.46889 * 109.47109 * 180.02562 * 15 13 3 17 17 C 1.48563 * 110.99839 * 185.29301 * 16 15 13 18 18 C 1.54382 * 104.59535 * 200.95722 * 17 16 15 19 19 H 1.08998 * 110.41092 * 264.91048 * 18 17 16 20 20 C 1.53003 * 110.32125 * 142.74938 * 18 17 16 21 21 C 1.54261 * 105.05825 * 23.85371 * 18 17 16 22 22 H 1.08998 * 110.40814 * 241.05799 * 21 18 17 23 23 O 1.42896 * 110.32294 * 118.89902 * 21 18 17 24 24 C 1.48560 * 111.00457 * 69.87792 * 16 15 13 25 25 H 1.09003 * 109.47272 * 300.00321 * 1 2 3 26 26 H 1.08997 * 109.47273 * 60.00010 * 1 2 3 27 27 H 1.09005 * 109.47395 * 180.02562 * 1 2 3 28 28 H 1.08994 * 109.47531 * 239.99672 * 2 1 3 29 29 H 1.09005 * 109.46544 * 119.99607 * 2 1 3 30 30 H 1.09000 * 109.46803 * 209.99571 * 4 3 2 31 31 H 1.09000 * 109.47214 * 330.00364 * 4 3 2 32 32 H 0.96998 * 119.99944 * 179.97438 * 8 7 5 33 33 H 1.09004 * 109.46762 * 300.00389 * 15 13 3 34 34 H 1.08998 * 109.46924 * 59.99727 * 15 13 3 35 35 H 1.09000 * 110.41154 * 319.73673 * 17 16 15 36 36 H 1.09002 * 110.41399 * 82.18115 * 17 16 15 37 37 H 1.09005 * 109.47012 * 304.36116 * 20 18 17 38 38 H 1.08996 * 109.47117 * 64.36354 * 20 18 17 39 39 H 1.09002 * 109.46557 * 184.36487 * 20 18 17 40 40 H 0.96700 * 114.00224 * 182.90814 * 23 21 18 41 41 H 1.09007 * 110.40554 * 277.81680 * 24 16 15 42 42 H 1.08998 * 110.40891 * 40.25583 * 24 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2624 2.0718 1.2688 5 6 3.6857 1.8350 1.7039 6 1 4.3428 1.2309 1.0958 7 6 4.1493 2.3905 2.8775 8 7 3.3493 3.1266 3.6176 9 14 5.9133 2.0964 3.4172 10 1 6.6007 1.2403 2.4172 11 1 6.6214 3.3972 3.5249 12 1 5.9203 1.4182 4.7383 13 6 2.2377 2.0184 -1.1671 14 8 2.6372 3.1635 -1.1672 15 6 1.9865 1.3080 -2.4723 16 7 2.2990 2.2100 -3.5888 17 6 1.9435 1.5887 -4.8906 18 6 2.7864 2.3569 -5.9313 19 1 2.2038 3.1677 -6.3685 20 6 3.2759 1.4056 -7.0251 21 6 3.9826 2.9233 -5.1389 22 1 3.9880 4.0122 -5.1855 23 8 5.2096 2.3995 -5.6507 24 6 3.7619 2.4497 -3.6863 25 1 -0.3634 0.5139 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3634 -1.0277 0.0005 28 1 1.8934 -0.5138 -0.8899 29 1 1.8933 -0.5138 0.8901 30 1 2.0955 3.1411 1.1383 31 1 1.5816 1.6877 2.0284 32 1 3.6753 3.5170 4.4435 33 1 2.6203 0.4232 -2.5321 34 1 0.9397 1.0094 -2.5279 35 1 2.2086 0.5315 -4.8923 36 1 0.8802 1.7153 -5.0945 37 1 3.8242 0.5805 -6.5704 38 1 2.4206 1.0140 -7.5756 39 1 3.9319 1.9449 -7.7085 40 1 5.9937 2.6861 -5.1626 41 1 4.0677 3.2246 -2.9832 42 1 4.3115 1.5272 -3.4994 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000351959324.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:54:15 Heat of formation + Delta-G solvation = -105.011052 kcal Electronic energy + Delta-G solvation = -21727.875320 eV Core-core repulsion = 18513.880630 eV Total energy + Delta-G solvation = -3213.994690 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 270.173 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.13387 -39.92553 -37.06121 -36.63908 -34.94034 -33.77631 -31.63047 -30.47739 -29.23616 -27.92086 -25.94983 -24.69979 -23.95114 -22.48875 -21.00466 -19.75947 -18.64488 -18.43799 -17.96870 -17.32266 -16.79952 -16.47357 -16.16795 -15.52604 -15.20420 -15.05945 -14.72655 -14.60596 -14.23805 -14.06088 -13.67235 -13.44222 -13.30048 -13.28033 -13.08911 -13.00632 -12.70213 -12.62424 -12.47165 -12.16703 -11.98856 -11.95097 -11.86287 -11.69709 -11.44309 -10.89342 -10.66231 -10.54914 -9.49748 -9.41333 -8.23409 -6.38537 1.34535 1.36825 1.48495 1.85909 2.21155 2.39608 2.91077 3.05860 3.41273 3.55309 3.60052 3.89622 3.97379 4.07358 4.21477 4.24788 4.32906 4.44677 4.48832 4.62640 4.63787 4.67669 4.81256 4.84316 4.93455 4.96575 4.99555 5.05160 5.17164 5.21525 5.25657 5.38925 5.47309 5.57377 5.73727 5.83419 5.92658 6.06085 6.69928 6.78653 6.82531 7.27982 7.53038 8.83795 Molecular weight = 270.17amu Principal moments of inertia in cm(-1) A = 0.019910 B = 0.004992 C = 0.004274 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1405.982653 B = 5607.361998 C = 6548.991426 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.099 3.901 3 N -0.606 5.606 4 C 0.264 3.736 5 C -0.540 4.540 6 H 0.051 0.949 7 C 0.007 3.993 8 N -0.929 5.929 9 Si 0.968 3.032 10 H -0.267 1.267 11 H -0.282 1.282 12 H -0.268 1.268 13 C 0.496 3.504 14 O -0.581 6.581 15 C 0.042 3.958 16 N -0.510 5.510 17 C 0.038 3.962 18 C -0.089 4.089 19 H 0.095 0.905 20 C -0.120 4.120 21 C 0.107 3.893 22 H 0.065 0.935 23 O -0.566 6.566 24 C 0.007 3.993 25 H 0.037 0.963 26 H 0.060 0.940 27 H 0.096 0.904 28 H 0.097 0.903 29 H 0.071 0.929 30 H -0.006 1.006 31 H 0.021 0.979 32 H 0.267 0.733 33 H 0.079 0.921 34 H 0.129 0.871 35 H 0.059 0.941 36 H 0.101 0.899 37 H 0.047 0.953 38 H 0.069 0.931 39 H 0.056 0.944 40 H 0.390 0.610 41 H 0.060 0.940 42 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.072 -8.637 -18.404 20.561 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.023 4.023 3 N -0.338 5.338 4 C 0.142 3.858 5 C -0.579 4.579 6 H 0.070 0.930 7 C -0.192 4.192 8 N -0.569 5.569 9 Si 0.792 3.208 10 H -0.192 1.192 11 H -0.207 1.207 12 H -0.194 1.194 13 C 0.285 3.715 14 O -0.461 6.461 15 C -0.089 4.089 16 N -0.235 5.235 17 C -0.089 4.089 18 C -0.107 4.107 19 H 0.113 0.887 20 C -0.177 4.177 21 C 0.047 3.953 22 H 0.083 0.917 23 O -0.373 6.373 24 C -0.122 4.122 25 H 0.056 0.944 26 H 0.079 0.921 27 H 0.115 0.885 28 H 0.115 0.885 29 H 0.090 0.910 30 H 0.012 0.988 31 H 0.039 0.961 32 H 0.076 0.924 33 H 0.097 0.903 34 H 0.146 0.854 35 H 0.077 0.923 36 H 0.120 0.880 37 H 0.067 0.933 38 H 0.088 0.912 39 H 0.075 0.925 40 H 0.240 0.760 41 H 0.079 0.921 42 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -3.585 -7.754 -18.548 20.421 hybrid contribution 1.674 -0.046 1.476 2.233 sum -1.910 -7.801 -17.072 18.867 Atomic orbital electron populations 1.22156 0.94464 1.03537 1.01716 1.21740 0.95413 0.81373 1.03756 1.48289 1.64309 1.15021 1.06165 1.18670 0.95243 0.91432 0.80428 1.21716 0.97829 1.31869 1.06486 0.93039 1.25863 1.02399 0.94460 0.96430 1.70065 1.37714 1.34261 1.14824 0.85364 0.78984 0.78002 0.78419 1.19153 1.20749 1.19355 1.21131 0.77455 0.86703 0.86241 1.90617 1.47377 1.20258 1.87812 1.22185 1.04663 0.93970 0.88128 1.65057 1.14557 1.41479 1.02443 1.23372 1.01465 0.97121 0.86964 1.21991 0.93877 0.99260 0.95622 0.88663 1.21432 1.00765 0.98391 0.97145 1.22469 0.85605 0.96947 0.90268 0.91701 1.86476 1.16412 1.75358 1.59070 1.23803 0.89339 1.00448 0.98582 0.94362 0.92052 0.88513 0.88456 0.91022 0.98754 0.96135 0.92415 0.90347 0.85371 0.92279 0.88050 0.93342 0.91229 0.92501 0.76047 0.92118 0.93689 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.93 10.24 71.98 0.74 -3.20 16 2 C 0.10 3.03 5.93 86.38 0.51 3.54 16 3 N -0.61 -26.02 2.46 -826.13 -2.03 -28.05 16 4 C 0.26 14.53 5.17 85.63 0.44 14.97 16 5 C -0.54 -31.58 9.39 25.60 0.24 -31.34 16 6 H 0.05 2.98 7.81 -2.91 -0.02 2.96 16 7 C 0.01 0.43 5.46 84.65 0.46 0.89 16 8 N -0.93 -56.91 13.29 21.45 0.28 -56.62 16 9 Si 0.97 45.30 29.54 68.60 2.03 47.32 16 10 H -0.27 -12.09 7.11 99.48 0.71 -11.39 16 11 H -0.28 -13.07 7.11 99.48 0.71 -12.36 16 12 H -0.27 -11.86 7.11 99.48 0.71 -11.15 16 13 C 0.50 21.11 7.48 87.66 0.66 21.77 16 14 O -0.58 -30.87 14.42 -3.03 -0.04 -30.92 16 15 C 0.04 1.21 3.85 85.56 0.33 1.54 16 16 N -0.51 -14.95 5.06 -886.05 -4.48 -19.43 16 17 C 0.04 0.77 6.03 86.45 0.52 1.29 16 18 C -0.09 -1.76 3.65 -9.90 -0.04 -1.79 16 19 H 0.10 1.72 8.14 -2.39 -0.02 1.70 16 20 C -0.12 -2.04 8.16 71.98 0.59 -1.46 16 21 C 0.11 2.55 4.40 31.49 0.14 2.69 16 22 H 0.07 1.57 8.14 -2.39 -0.02 1.55 16 23 O -0.57 -12.22 11.56 -148.98 -1.72 -13.94 16 24 C 0.01 0.21 5.53 86.45 0.48 0.69 16 25 H 0.04 1.11 8.14 -2.39 -0.02 1.09 16 26 H 0.06 1.38 7.20 -2.39 -0.02 1.37 16 27 H 0.10 1.68 8.14 -2.38 -0.02 1.66 16 28 H 0.10 2.27 6.45 -2.39 -0.02 2.26 16 29 H 0.07 2.33 8.07 -2.38 -0.02 2.31 16 30 H -0.01 -0.36 7.41 -2.39 -0.02 -0.38 16 31 H 0.02 1.15 8.07 -2.39 -0.02 1.13 16 32 H 0.27 15.27 8.31 -92.71 -0.77 14.49 16 33 H 0.08 1.99 7.15 -2.39 -0.02 1.98 16 34 H 0.13 2.95 7.15 -2.39 -0.02 2.93 16 35 H 0.06 1.07 7.68 -2.39 -0.02 1.05 16 36 H 0.10 1.72 8.14 -2.39 -0.02 1.70 16 37 H 0.05 0.92 7.85 -2.38 -0.02 0.90 16 38 H 0.07 0.91 8.14 -2.39 -0.02 0.89 16 39 H 0.06 1.02 7.90 -2.39 -0.02 1.00 16 40 H 0.39 6.13 9.11 -74.06 -0.67 5.45 16 41 H 0.06 2.32 6.91 -2.38 -0.02 2.31 16 42 H 0.04 1.36 7.76 -2.39 -0.02 1.34 16 Total: -1.00 -76.69 336.60 -0.58 -77.27 By element: Atomic # 1 Polarization: 14.46 SS G_CDS: 0.32 Total: 14.79 kcal Atomic # 6 Polarization: 4.52 SS G_CDS: 5.07 Total: 9.59 kcal Atomic # 7 Polarization: -97.88 SS G_CDS: -6.23 Total: -104.11 kcal Atomic # 8 Polarization: -43.09 SS G_CDS: -1.77 Total: -44.85 kcal Atomic # 14 Polarization: 45.30 SS G_CDS: 2.03 Total: 47.32 kcal Total: -76.69 -0.58 -77.27 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000351959324.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.745 kcal (2) G-P(sol) polarization free energy of solvation -76.688 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.433 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.578 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.266 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.011 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds