Wall clock time and date at job start Mon Mar 30 2020 00:53:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46500 * 109.46949 * 2 1 4 4 C 1.46504 * 120.00524 * 270.00307 * 3 2 1 5 5 C 1.50700 * 109.46732 * 270.00260 * 4 3 2 6 6 H 1.07992 * 120.00222 * 359.97438 * 5 4 3 7 7 C 1.37887 * 119.99488 * 179.97438 * 5 4 3 8 8 N 1.31517 * 120.00035 * 359.97438 * 7 5 4 9 9 Si 1.86794 * 119.99658 * 179.97438 * 7 5 4 10 10 H 1.48504 * 109.47064 * 89.99961 * 9 7 5 11 11 H 1.48504 * 109.47107 * 209.99696 * 9 7 5 12 12 H 1.48497 * 109.47334 * 329.99977 * 9 7 5 13 13 C 1.34782 * 119.99715 * 90.00287 * 3 2 1 14 14 O 1.21284 * 119.99740 * 180.02562 * 13 3 2 15 15 C 1.50696 * 120.00076 * 359.97438 * 13 3 2 16 16 N 1.46900 * 109.47075 * 179.97438 * 15 13 3 17 17 C 1.48670 * 111.11080 * 285.41723 * 16 15 13 18 18 C 1.54377 * 104.67311 * 201.09660 * 17 16 15 19 19 C 1.54263 * 105.06261 * 23.77315 * 18 17 16 20 20 C 1.48562 * 110.99906 * 170.00120 * 16 15 13 21 21 H 1.08999 * 110.41328 * 40.14183 * 20 16 15 22 22 C 1.52999 * 110.41308 * 277.82056 * 20 16 15 23 23 O 1.42903 * 109.47256 * 296.65296 * 22 20 16 24 24 H 1.09001 * 109.47279 * 180.02562 * 1 2 3 25 25 H 1.09008 * 109.47048 * 299.99606 * 1 2 3 26 26 H 1.09000 * 109.47676 * 59.99692 * 1 2 3 27 27 H 1.08999 * 109.46842 * 240.00951 * 2 1 3 28 28 H 1.08996 * 109.47207 * 120.00135 * 2 1 3 29 29 H 1.08999 * 109.46432 * 30.00159 * 4 3 2 30 30 H 1.08996 * 109.47238 * 149.99641 * 4 3 2 31 31 H 0.96991 * 119.99987 * 180.02562 * 8 7 5 32 32 H 1.09000 * 109.47336 * 59.99946 * 15 13 3 33 33 H 1.09003 * 109.47369 * 299.99854 * 15 13 3 34 34 H 1.08998 * 110.43677 * 82.26152 * 17 16 15 35 35 H 1.08998 * 110.40934 * 319.92044 * 17 16 15 36 36 H 1.09001 * 110.32580 * 264.87822 * 18 17 16 37 37 H 1.08996 * 110.32323 * 142.67094 * 18 17 16 38 38 H 1.08996 * 110.32566 * 241.10357 * 19 18 17 39 39 H 1.08994 * 110.40914 * 118.93433 * 19 18 17 40 40 H 1.08997 * 109.47286 * 176.64856 * 22 20 16 41 41 H 1.09008 * 109.47201 * 56.64637 * 22 20 16 42 42 H 0.96700 * 114.00311 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2624 2.0720 -1.2687 5 6 3.6857 1.8352 -1.7037 6 1 4.3427 1.2310 -1.0958 7 6 4.1489 2.3900 -2.8780 8 7 3.3486 3.1253 -3.6185 9 14 5.9133 2.0970 -3.4169 10 1 5.9773 0.8757 -4.2593 11 1 6.3919 3.2643 -4.2004 12 1 6.7734 1.9182 -2.2197 13 6 2.2429 2.0165 1.1673 14 8 2.6467 3.1602 1.1673 15 6 1.9913 1.3063 2.4723 16 7 2.3102 2.2060 3.5889 17 6 3.7803 2.3515 3.7563 18 6 3.9624 2.8329 5.2117 19 6 2.6939 2.3608 5.9518 20 6 1.8520 1.6339 4.8811 21 1 2.0430 0.5612 4.9110 22 6 0.3630 1.9156 5.0914 23 8 0.1530 3.3263 5.1813 24 1 -0.3634 -1.0277 0.0005 25 1 -0.3633 0.5138 0.8901 26 1 -0.3634 0.5139 -0.8899 27 1 1.8932 -0.5137 -0.8901 28 1 1.8933 -0.5138 0.8899 29 1 1.5815 1.6879 -2.0283 30 1 2.0953 3.1412 -1.1383 31 1 3.6743 3.5152 -4.4447 32 1 2.6211 0.4185 2.5302 33 1 0.9432 1.0125 2.5299 34 1 4.1712 3.0925 3.0590 35 1 4.2765 1.3924 3.6082 36 1 4.0373 3.9198 5.2444 37 1 4.8493 2.3780 5.6527 38 1 2.1462 3.2160 6.3477 39 1 2.9567 1.6747 6.7568 40 1 0.0297 1.4391 6.0133 41 1 -0.2046 1.5168 4.2505 42 1 -0.7707 3.5787 5.3156 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000353293123.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:53:47 Heat of formation + Delta-G solvation = -76.120887 kcal Electronic energy + Delta-G solvation = -21896.934599 eV Core-core repulsion = 18684.192680 eV Total energy + Delta-G solvation = -3212.741919 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 270.173 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -39.65551 -38.29075 -36.14869 -35.11702 -32.85738 -32.01966 -30.12444 -30.01713 -27.74162 -25.80024 -24.78815 -22.98648 -22.38029 -20.88515 -20.05859 -18.25570 -17.46431 -16.52822 -16.23548 -15.90883 -15.30858 -15.04918 -14.91756 -14.40645 -14.07463 -13.46507 -13.41380 -13.30960 -13.00866 -12.57284 -12.40735 -12.08512 -11.88798 -11.80379 -11.63157 -11.19378 -11.08072 -10.98858 -10.86580 -10.72276 -10.66937 -10.48466 -10.40475 -10.07624 -9.94358 -9.58019 -8.82395 -8.39552 -8.14398 -7.56568 -6.00090 -4.04584 3.31888 3.38661 3.42524 3.56322 3.72736 4.22396 4.28342 4.48568 4.64606 4.85711 5.04078 5.17549 5.22466 5.28071 5.32706 5.34542 5.38205 5.41705 5.51294 5.57087 5.67746 5.75461 5.77865 5.83796 5.94336 6.04423 6.13707 6.25643 6.32566 6.40627 6.50208 7.01165 7.03995 7.23042 7.52599 7.64111 7.69674 7.97365 8.29215 8.53108 8.96240 9.24479 9.60569 11.07919 Molecular weight = 270.17amu Principal moments of inertia in cm(-1) A = 0.022120 B = 0.005058 C = 0.004500 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1265.533201 B = 5534.087831 C = 6220.557788 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.108 3.892 3 N -0.602 5.602 4 C 0.248 3.752 5 C -0.524 4.524 6 H 0.055 0.945 7 C 0.061 3.939 8 N -0.895 5.895 9 Si 0.897 3.103 10 H -0.281 1.281 11 H -0.285 1.285 12 H -0.275 1.275 13 C 0.508 3.492 14 O -0.520 6.520 15 C 0.025 3.975 16 N -0.473 5.473 17 C 0.035 3.965 18 C -0.121 4.121 19 C -0.114 4.114 20 C 0.056 3.944 21 H 0.060 0.940 22 C 0.093 3.907 23 O -0.552 6.552 24 H 0.058 0.942 25 H 0.049 0.951 26 H 0.061 0.939 27 H 0.081 0.919 28 H 0.060 0.940 29 H 0.030 0.970 30 H 0.043 0.957 31 H 0.263 0.737 32 H 0.056 0.944 33 H 0.092 0.908 34 H 0.096 0.904 35 H 0.037 0.963 36 H 0.072 0.928 37 H 0.063 0.937 38 H 0.083 0.917 39 H 0.061 0.939 40 H 0.044 0.956 41 H 0.043 0.957 42 H 0.371 0.629 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.283 -7.707 17.456 20.090 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.017 4.017 3 N -0.336 5.336 4 C 0.129 3.871 5 C -0.563 4.563 6 H 0.074 0.926 7 C -0.141 4.141 8 N -0.534 5.534 9 Si 0.725 3.275 10 H -0.207 1.207 11 H -0.211 1.211 12 H -0.200 1.200 13 C 0.294 3.706 14 O -0.395 6.395 15 C -0.107 4.107 16 N -0.198 5.198 17 C -0.092 4.092 18 C -0.159 4.159 19 C -0.152 4.152 20 C -0.053 4.053 21 H 0.078 0.922 22 C 0.015 3.985 23 O -0.355 6.355 24 H 0.077 0.923 25 H 0.068 0.932 26 H 0.080 0.920 27 H 0.100 0.900 28 H 0.079 0.921 29 H 0.048 0.952 30 H 0.061 0.939 31 H 0.072 0.928 32 H 0.074 0.926 33 H 0.110 0.890 34 H 0.114 0.886 35 H 0.055 0.945 36 H 0.091 0.909 37 H 0.082 0.918 38 H 0.102 0.898 39 H 0.080 0.920 40 H 0.063 0.937 41 H 0.061 0.939 42 H 0.217 0.783 Dipole moment (debyes) X Y Z Total from point charges -5.672 -6.456 17.043 19.087 hybrid contribution 0.657 -1.240 -0.324 1.440 sum -5.015 -7.696 16.719 19.076 Atomic orbital electron populations 1.22226 0.96936 1.01228 1.02325 1.21375 0.93424 0.84498 1.02396 1.48257 1.64507 1.13111 1.07704 1.19227 0.96077 0.93678 0.78130 1.21440 0.96999 1.31736 1.06130 0.92626 1.24934 0.97766 0.94963 0.96450 1.69933 1.35654 1.33533 1.14283 0.86514 0.84819 0.77629 0.78545 1.20706 1.21092 1.19964 1.20051 0.78959 0.87090 0.84539 1.90665 1.44454 1.17578 1.86792 1.22293 1.02042 0.94453 0.91920 1.65121 1.11981 1.42397 1.00253 1.23189 0.88076 1.00635 0.97346 1.22258 0.97090 1.01838 0.94756 1.22212 0.95933 1.00574 0.96480 1.22775 0.94392 0.96792 0.91304 0.92219 1.21981 0.95290 0.82676 0.98595 1.86632 1.30861 1.21951 1.96096 0.92303 0.93199 0.91975 0.90040 0.92138 0.95174 0.93912 0.92770 0.92609 0.88969 0.88611 0.94476 0.90913 0.91789 0.89799 0.91998 0.93749 0.93894 0.78328 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.29 10.24 37.16 0.38 -1.91 16 2 C 0.11 1.75 5.93 -4.04 -0.02 1.73 16 3 N -0.60 -13.06 2.46 -175.06 -0.43 -13.49 16 4 C 0.25 6.64 5.16 -5.19 -0.03 6.61 16 5 C -0.52 -15.11 9.39 -34.44 -0.32 -15.44 16 6 H 0.06 1.60 7.81 -52.49 -0.41 1.19 16 7 C 0.06 1.76 5.46 -17.81 -0.10 1.67 16 8 N -0.89 -27.02 13.29 55.43 0.74 -26.29 16 9 Si 0.90 22.18 29.54 -169.99 -5.02 17.16 16 10 H -0.28 -6.72 7.11 56.52 0.40 -6.31 16 11 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 12 H -0.27 -6.78 7.11 56.52 0.40 -6.38 16 13 C 0.51 11.06 7.52 -10.98 -0.08 10.98 16 14 O -0.52 -13.76 14.82 5.55 0.08 -13.67 16 15 C 0.02 0.40 3.82 -4.98 -0.02 0.38 16 16 N -0.47 -7.68 4.61 -223.47 -1.03 -8.71 16 17 C 0.04 0.56 5.93 -2.12 -0.01 0.55 16 18 C -0.12 -1.55 7.00 -25.35 -0.18 -1.72 16 19 C -0.11 -1.31 6.45 -25.35 -0.16 -1.47 16 20 C 0.06 0.69 2.68 -66.07 -0.18 0.51 16 21 H 0.06 0.64 7.99 -51.93 -0.42 0.22 16 22 C 0.09 0.99 6.88 37.16 0.26 1.25 16 23 O -0.55 -6.73 12.39 -35.23 -0.44 -7.17 16 24 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 25 H 0.05 0.65 7.22 -51.92 -0.37 0.27 16 26 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 27 H 0.08 1.38 8.07 -51.93 -0.42 0.96 16 28 H 0.06 0.82 6.44 -51.93 -0.33 0.49 16 29 H 0.03 0.81 8.07 -51.93 -0.42 0.39 16 30 H 0.04 1.30 7.42 -51.93 -0.39 0.92 16 31 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 32 H 0.06 0.81 7.03 -51.93 -0.37 0.45 16 33 H 0.09 1.29 6.16 -51.93 -0.32 0.97 16 34 H 0.10 1.84 7.25 -51.93 -0.38 1.47 16 35 H 0.04 0.55 7.75 -51.93 -0.40 0.15 16 36 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 37 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 38 H 0.08 1.03 6.94 -51.93 -0.36 0.67 16 39 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 40 H 0.04 0.36 8.14 -51.93 -0.42 -0.07 16 41 H 0.04 0.45 7.21 -51.92 -0.37 0.07 16 42 H 0.37 2.79 9.12 45.56 0.42 3.20 16 LS Contribution 336.52 15.07 5.07 5.07 Total: -1.00 -35.39 336.52 -7.71 -43.09 By element: Atomic # 1 Polarization: 7.11 SS G_CDS: -6.21 Total: 0.90 kcal Atomic # 6 Polarization: 3.58 SS G_CDS: -0.47 Total: 3.11 kcal Atomic # 7 Polarization: -47.76 SS G_CDS: -0.72 Total: -48.48 kcal Atomic # 8 Polarization: -20.49 SS G_CDS: -0.35 Total: -20.84 kcal Atomic # 14 Polarization: 22.18 SS G_CDS: -5.02 Total: 17.16 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -35.39 -7.71 -43.09 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000353293123.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.028 kcal (2) G-P(sol) polarization free energy of solvation -35.385 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.414 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.707 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.092 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.121 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds