Wall clock time and date at job start Mon Mar 30 2020 00:53:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46500 * 109.46949 * 2 1 4 4 C 1.46504 * 120.00524 * 270.00307 * 3 2 1 5 5 C 1.50700 * 109.46732 * 270.00260 * 4 3 2 6 6 H 1.07992 * 120.00222 * 359.97438 * 5 4 3 7 7 C 1.37887 * 119.99488 * 179.97438 * 5 4 3 8 8 N 1.31517 * 120.00035 * 359.97438 * 7 5 4 9 9 Si 1.86794 * 119.99658 * 179.97438 * 7 5 4 10 10 H 1.48504 * 109.47064 * 89.99961 * 9 7 5 11 11 H 1.48504 * 109.47107 * 209.99696 * 9 7 5 12 12 H 1.48497 * 109.47334 * 329.99977 * 9 7 5 13 13 C 1.34782 * 119.99715 * 90.00287 * 3 2 1 14 14 O 1.21284 * 119.99740 * 180.02562 * 13 3 2 15 15 C 1.50696 * 120.00076 * 359.97438 * 13 3 2 16 16 N 1.46900 * 109.47075 * 179.97438 * 15 13 3 17 17 C 1.48670 * 111.11080 * 285.41723 * 16 15 13 18 18 C 1.54377 * 104.67311 * 201.09660 * 17 16 15 19 19 C 1.54263 * 105.06261 * 23.77315 * 18 17 16 20 20 C 1.48562 * 110.99906 * 170.00120 * 16 15 13 21 21 H 1.08999 * 110.41328 * 40.14183 * 20 16 15 22 22 C 1.52999 * 110.41308 * 277.82056 * 20 16 15 23 23 O 1.42903 * 109.47256 * 296.65296 * 22 20 16 24 24 H 1.09001 * 109.47279 * 180.02562 * 1 2 3 25 25 H 1.09008 * 109.47048 * 299.99606 * 1 2 3 26 26 H 1.09000 * 109.47676 * 59.99692 * 1 2 3 27 27 H 1.08999 * 109.46842 * 240.00951 * 2 1 3 28 28 H 1.08996 * 109.47207 * 120.00135 * 2 1 3 29 29 H 1.08999 * 109.46432 * 30.00159 * 4 3 2 30 30 H 1.08996 * 109.47238 * 149.99641 * 4 3 2 31 31 H 0.96991 * 119.99987 * 180.02562 * 8 7 5 32 32 H 1.09000 * 109.47336 * 59.99946 * 15 13 3 33 33 H 1.09003 * 109.47369 * 299.99854 * 15 13 3 34 34 H 1.08998 * 110.43677 * 82.26152 * 17 16 15 35 35 H 1.08998 * 110.40934 * 319.92044 * 17 16 15 36 36 H 1.09001 * 110.32580 * 264.87822 * 18 17 16 37 37 H 1.08996 * 110.32323 * 142.67094 * 18 17 16 38 38 H 1.08996 * 110.32566 * 241.10357 * 19 18 17 39 39 H 1.08994 * 110.40914 * 118.93433 * 19 18 17 40 40 H 1.08997 * 109.47286 * 176.64856 * 22 20 16 41 41 H 1.09008 * 109.47201 * 56.64637 * 22 20 16 42 42 H 0.96700 * 114.00311 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2624 2.0720 -1.2687 5 6 3.6857 1.8352 -1.7037 6 1 4.3427 1.2310 -1.0958 7 6 4.1489 2.3900 -2.8780 8 7 3.3486 3.1253 -3.6185 9 14 5.9133 2.0970 -3.4169 10 1 5.9773 0.8757 -4.2593 11 1 6.3919 3.2643 -4.2004 12 1 6.7734 1.9182 -2.2197 13 6 2.2429 2.0165 1.1673 14 8 2.6467 3.1602 1.1673 15 6 1.9913 1.3063 2.4723 16 7 2.3102 2.2060 3.5889 17 6 3.7803 2.3515 3.7563 18 6 3.9624 2.8329 5.2117 19 6 2.6939 2.3608 5.9518 20 6 1.8520 1.6339 4.8811 21 1 2.0430 0.5612 4.9110 22 6 0.3630 1.9156 5.0914 23 8 0.1530 3.3263 5.1813 24 1 -0.3634 -1.0277 0.0005 25 1 -0.3633 0.5138 0.8901 26 1 -0.3634 0.5139 -0.8899 27 1 1.8932 -0.5137 -0.8901 28 1 1.8933 -0.5138 0.8899 29 1 1.5815 1.6879 -2.0283 30 1 2.0953 3.1412 -1.1383 31 1 3.6743 3.5152 -4.4447 32 1 2.6211 0.4185 2.5302 33 1 0.9432 1.0125 2.5299 34 1 4.1712 3.0925 3.0590 35 1 4.2765 1.3924 3.6082 36 1 4.0373 3.9198 5.2444 37 1 4.8493 2.3780 5.6527 38 1 2.1462 3.2160 6.3477 39 1 2.9567 1.6747 6.7568 40 1 0.0297 1.4391 6.0133 41 1 -0.2046 1.5168 4.2505 42 1 -0.7707 3.5787 5.3156 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000353293123.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:53:46 Heat of formation + Delta-G solvation = -104.316906 kcal Electronic energy + Delta-G solvation = -21898.157270 eV Core-core repulsion = 18684.192680 eV Total energy + Delta-G solvation = -3213.964590 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 270.173 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.03413 -39.63946 -37.11586 -36.78424 -34.94780 -33.27974 -31.58512 -31.06064 -29.50726 -27.36819 -25.79839 -24.71833 -23.93059 -22.04526 -21.00646 -19.84961 -18.63176 -18.35168 -17.87211 -17.33750 -16.58931 -16.47351 -16.26702 -15.86087 -15.46614 -14.75892 -14.70613 -14.59615 -14.28227 -14.04252 -13.66947 -13.61050 -13.28804 -13.12772 -13.06391 -12.89918 -12.67399 -12.51386 -12.27420 -12.15116 -12.08975 -11.83782 -11.71696 -11.61322 -11.35423 -10.73271 -10.65028 -10.52575 -9.40799 -9.32382 -8.22822 -6.38084 1.34213 1.37929 1.48047 1.89862 2.23769 2.40727 3.04419 3.06448 3.47215 3.61375 3.79424 3.95502 4.06138 4.13316 4.23151 4.30692 4.35448 4.44391 4.49241 4.57046 4.62873 4.65226 4.75476 4.87923 4.94052 4.98749 5.04315 5.04906 5.07793 5.21564 5.24342 5.38450 5.40025 5.57927 5.85979 5.92282 6.06258 6.07754 6.70461 6.85333 7.08628 7.28609 7.57414 8.84231 Molecular weight = 270.17amu Principal moments of inertia in cm(-1) A = 0.022120 B = 0.005058 C = 0.004500 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1265.533201 B = 5534.087831 C = 6220.557788 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.100 3.900 3 N -0.608 5.608 4 C 0.264 3.736 5 C -0.541 4.541 6 H 0.051 0.949 7 C 0.006 3.994 8 N -0.929 5.929 9 Si 0.969 3.031 10 H -0.261 1.261 11 H -0.281 1.281 12 H -0.274 1.274 13 C 0.496 3.504 14 O -0.582 6.582 15 C 0.042 3.958 16 N -0.505 5.505 17 C 0.033 3.967 18 C -0.117 4.117 19 C -0.108 4.108 20 C 0.052 3.948 21 H 0.087 0.913 22 C 0.090 3.910 23 O -0.582 6.582 24 H 0.098 0.902 25 H 0.058 0.942 26 H 0.036 0.964 27 H 0.071 0.929 28 H 0.098 0.902 29 H 0.021 0.979 30 H -0.009 1.009 31 H 0.267 0.733 32 H 0.082 0.918 33 H 0.121 0.879 34 H 0.045 0.955 35 H 0.047 0.953 36 H 0.055 0.945 37 H 0.088 0.912 38 H 0.072 0.928 39 H 0.094 0.906 40 H 0.079 0.921 41 H 0.045 0.955 42 H 0.388 0.612 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.369 -10.658 19.512 23.127 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.022 4.022 3 N -0.340 5.340 4 C 0.143 3.857 5 C -0.580 4.580 6 H 0.070 0.930 7 C -0.192 4.192 8 N -0.569 5.569 9 Si 0.793 3.207 10 H -0.186 1.186 11 H -0.206 1.206 12 H -0.199 1.199 13 C 0.284 3.716 14 O -0.461 6.461 15 C -0.090 4.090 16 N -0.230 5.230 17 C -0.095 4.095 18 C -0.155 4.155 19 C -0.146 4.146 20 C -0.055 4.055 21 H 0.105 0.895 22 C 0.012 3.988 23 O -0.389 6.389 24 H 0.116 0.884 25 H 0.077 0.923 26 H 0.056 0.944 27 H 0.090 0.910 28 H 0.116 0.884 29 H 0.039 0.961 30 H 0.009 0.991 31 H 0.076 0.924 32 H 0.099 0.901 33 H 0.139 0.861 34 H 0.064 0.936 35 H 0.066 0.934 36 H 0.074 0.926 37 H 0.106 0.894 38 H 0.090 0.910 39 H 0.112 0.888 40 H 0.097 0.903 41 H 0.063 0.937 42 H 0.237 0.763 Dipole moment (debyes) X Y Z Total from point charges -5.803 -9.462 19.121 22.109 hybrid contribution 0.629 -0.289 -0.959 1.183 sum -5.174 -9.751 18.163 21.254 Atomic orbital electron populations 1.22151 0.94548 1.03525 1.01579 1.21736 0.95363 0.81359 1.03777 1.48304 1.64474 1.15116 1.06107 1.18646 0.95255 0.91312 0.80504 1.21695 0.97857 1.31979 1.06465 0.93031 1.25886 1.02492 0.94424 0.96433 1.70060 1.37844 1.34252 1.14753 0.85397 0.78845 0.78272 0.78165 1.18567 1.20632 1.19891 1.21199 0.77403 0.86671 0.86281 1.90633 1.47128 1.20534 1.87824 1.22165 1.04159 0.94109 0.88523 1.65026 1.11968 1.43869 1.02119 1.23090 0.88488 0.99768 0.98148 1.22237 0.99191 1.01000 0.93097 1.22208 0.94633 1.00833 0.96901 1.23010 0.95488 0.98158 0.88892 0.89496 1.22129 0.94212 0.82117 1.00350 1.86585 1.32766 1.23281 1.96276 0.88371 0.92268 0.94446 0.91012 0.88358 0.96123 0.99060 0.92418 0.90073 0.86078 0.93611 0.93432 0.92610 0.89357 0.90954 0.88788 0.90348 0.93702 0.76333 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.98 10.24 71.98 0.74 -3.24 16 2 C 0.10 3.09 5.93 86.38 0.51 3.60 16 3 N -0.61 -26.87 2.46 -826.16 -2.03 -28.90 16 4 C 0.26 14.92 5.16 85.63 0.44 15.36 16 5 C -0.54 -32.29 9.39 25.60 0.24 -32.05 16 6 H 0.05 3.04 7.81 -2.91 -0.02 3.02 16 7 C 0.01 0.38 5.46 84.66 0.46 0.84 16 8 N -0.93 -57.88 13.29 21.45 0.28 -57.59 16 9 Si 0.97 46.07 29.54 68.60 2.03 48.10 16 10 H -0.26 -11.52 7.11 99.48 0.71 -10.82 16 11 H -0.28 -13.08 7.11 99.48 0.71 -12.38 16 12 H -0.27 -12.90 7.11 99.48 0.71 -12.19 16 13 C 0.50 22.05 7.52 87.65 0.66 22.71 16 14 O -0.58 -32.73 14.82 -3.04 -0.05 -32.77 16 15 C 0.04 1.26 3.82 85.56 0.33 1.59 16 16 N -0.50 -15.81 4.61 -860.94 -3.97 -19.78 16 17 C 0.03 1.05 5.93 86.43 0.51 1.56 16 18 C -0.12 -2.86 7.00 31.49 0.22 -2.64 16 19 C -0.11 -2.17 6.45 31.49 0.20 -1.96 16 20 C 0.05 1.10 2.68 45.06 0.12 1.22 16 21 H 0.09 1.39 7.99 -2.39 -0.02 1.37 16 22 C 0.09 1.60 6.88 71.98 0.50 2.10 16 23 O -0.58 -13.24 12.39 -148.98 -1.85 -15.08 16 24 H 0.10 1.70 8.14 -2.39 -0.02 1.68 16 25 H 0.06 1.36 7.22 -2.38 -0.02 1.35 16 26 H 0.04 1.11 8.14 -2.39 -0.02 1.09 16 27 H 0.07 2.36 8.07 -2.39 -0.02 2.34 16 28 H 0.10 2.31 6.44 -2.39 -0.02 2.29 16 29 H 0.02 1.18 8.07 -2.39 -0.02 1.16 16 30 H -0.01 -0.58 7.42 -2.39 -0.02 -0.59 16 31 H 0.27 15.54 8.31 -92.72 -0.77 14.77 16 32 H 0.08 2.06 7.03 -2.39 -0.02 2.05 16 33 H 0.12 2.95 6.16 -2.39 -0.01 2.94 16 34 H 0.05 1.89 7.25 -2.39 -0.02 1.87 16 35 H 0.05 1.37 7.75 -2.39 -0.02 1.35 16 36 H 0.05 1.52 8.14 -2.39 -0.02 1.50 16 37 H 0.09 1.69 8.14 -2.39 -0.02 1.67 16 38 H 0.07 1.64 6.94 -2.39 -0.02 1.62 16 39 H 0.09 1.30 8.14 -2.39 -0.02 1.28 16 40 H 0.08 0.89 8.14 -2.39 -0.02 0.87 16 41 H 0.04 0.77 7.21 -2.38 -0.02 0.76 16 42 H 0.39 5.23 9.12 -74.06 -0.68 4.56 16 Total: -1.00 -83.05 336.52 -0.32 -83.36 By element: Atomic # 1 Polarization: 13.23 SS G_CDS: 0.33 Total: 13.55 kcal Atomic # 6 Polarization: 4.18 SS G_CDS: 4.93 Total: 9.11 kcal Atomic # 7 Polarization: -100.56 SS G_CDS: -5.71 Total: -106.27 kcal Atomic # 8 Polarization: -45.97 SS G_CDS: -1.89 Total: -47.86 kcal Atomic # 14 Polarization: 46.07 SS G_CDS: 2.03 Total: 48.10 kcal Total: -83.05 -0.32 -83.36 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000353293123.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.953 kcal (2) G-P(sol) polarization free energy of solvation -83.047 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.000 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.317 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.364 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.317 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds