Wall clock time and date at job start Mon Mar 30 2020 00:57:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46502 * 109.47119 * 2 1 4 4 C 1.46507 * 119.99718 * 273.09511 * 3 2 1 5 5 C 1.53001 * 109.46498 * 269.99611 * 4 3 2 6 6 O 1.42893 * 109.47283 * 65.00520 * 5 4 3 7 7 C 1.42899 * 114.00126 * 179.97438 * 6 5 4 8 8 C 1.34779 * 120.00101 * 93.08733 * 3 2 1 9 9 O 1.21588 * 119.99795 * 174.15475 * 8 3 2 10 10 N 1.34776 * 119.99926 * 354.43785 * 8 3 2 11 11 C 1.46497 * 119.99596 * 184.55139 * 10 8 3 12 12 C 1.53004 * 109.46792 * 175.02012 * 11 10 8 13 13 C 1.50695 * 115.55101 * 306.47150 * 12 11 10 14 14 H 1.08004 * 120.00427 * 144.19606 * 13 12 11 15 15 C 1.37877 * 120.00359 * 324.20408 * 13 12 11 16 16 N 1.31519 * 119.99671 * 3.29538 * 15 13 12 17 17 Si 1.86797 * 120.00549 * 183.29364 * 15 13 12 18 18 H 1.48501 * 109.47011 * 89.99629 * 17 15 13 19 19 H 1.48501 * 109.47324 * 209.99762 * 17 15 13 20 20 H 1.48504 * 109.46955 * 329.99808 * 17 15 13 21 21 C 1.53006 * 117.49762 * 160.80483 * 12 11 10 22 22 C 1.53003 * 117.49925 * 92.14570 * 12 11 10 23 23 H 1.09003 * 109.47147 * 59.99958 * 1 2 3 24 24 H 1.08995 * 109.47169 * 180.02562 * 1 2 3 25 25 H 1.09002 * 109.46747 * 300.00257 * 1 2 3 26 26 H 1.08995 * 109.46832 * 240.00135 * 2 1 3 27 27 H 1.09000 * 109.47153 * 119.99505 * 2 1 3 28 28 H 1.08993 * 109.46993 * 29.99502 * 4 3 2 29 29 H 1.09000 * 109.46817 * 150.00185 * 4 3 2 30 30 H 1.09003 * 109.46668 * 185.00002 * 5 4 3 31 31 H 1.09002 * 109.47294 * 304.99825 * 5 4 3 32 32 H 1.08992 * 109.47396 * 59.99642 * 7 6 5 33 33 H 1.09005 * 109.46897 * 179.97438 * 7 6 5 34 34 H 1.09005 * 109.46892 * 299.99557 * 7 6 5 35 35 H 0.97003 * 119.99850 * 4.54289 * 10 8 3 36 36 H 1.08996 * 109.47188 * 295.01474 * 11 10 8 37 37 H 1.08995 * 109.47613 * 55.02056 * 11 10 8 38 38 H 0.97002 * 119.99942 * 185.00844 * 16 15 13 39 39 H 1.08994 * 117.49771 * 359.97438 * 21 12 11 40 40 H 1.08998 * 117.49825 * 145.02175 * 21 12 11 41 41 H 1.09005 * 117.49823 * 214.98043 * 22 12 11 42 42 H 1.08998 * 117.50060 * 359.97194 * 22 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1979 2.0947 -1.2670 5 6 3.6185 1.8629 -1.7857 6 8 3.7901 0.4802 -2.1029 7 6 5.0899 0.1547 -2.5995 8 6 2.3023 1.9957 1.1655 9 8 2.8071 3.1018 1.1624 10 7 2.0319 1.3816 2.3344 11 6 2.2473 2.0877 3.5997 12 6 1.7500 1.2210 4.7584 13 6 0.3292 0.7326 4.6415 14 1 0.0642 -0.2495 5.0045 15 6 -0.6325 1.5392 4.0711 16 7 -0.2975 2.7083 3.5704 17 14 -2.4111 0.9717 4.0092 18 1 -3.1169 1.4209 5.2361 19 1 -3.0751 1.5534 2.8151 20 1 -2.4552 -0.5104 3.9273 21 6 2.2719 1.5473 6.1592 22 6 2.7630 0.2930 5.4319 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 -1.0276 0.0005 25 1 -0.3633 0.5139 0.8900 26 1 1.8933 -0.5138 -0.8900 27 1 1.8934 -0.5138 0.8900 28 1 1.4793 1.7239 -1.9977 29 1 2.0383 3.1613 -1.1091 30 1 3.7811 2.4637 -2.6805 31 1 4.3371 2.1516 -1.0187 32 1 5.8393 0.4081 -1.8497 33 1 5.1394 -0.9125 -2.8160 34 1 5.2826 0.7201 -3.5113 35 1 1.6945 0.4721 2.3377 36 1 3.3109 2.2889 3.7270 37 1 1.6982 3.0292 3.5885 38 1 -0.9833 3.3068 3.2349 39 1 2.9698 2.3790 6.2552 40 1 1.5877 1.4081 6.9962 41 1 2.4017 -0.6707 5.7908 42 1 3.7836 0.2996 5.0493 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000355831112.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:57:31 Heat of formation + Delta-G solvation = -45.259215 kcal Electronic energy + Delta-G solvation = -22243.056708 eV Core-core repulsion = 19031.653052 eV Total energy + Delta-G solvation = -3211.403656 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 270.173 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -39.47044 -37.72374 -36.71128 -35.14432 -33.04140 -32.13085 -30.93134 -28.75603 -26.40995 -25.74117 -25.01401 -22.93671 -22.28603 -21.19177 -19.20364 -18.77587 -17.53763 -16.40383 -16.27545 -15.86184 -15.30397 -15.04008 -14.76477 -14.23599 -13.80708 -13.69519 -13.37602 -13.17340 -12.60369 -12.53538 -12.27417 -11.78169 -11.73731 -11.66131 -11.37796 -11.34435 -11.09853 -10.98105 -10.68431 -10.63230 -10.49451 -10.20555 -9.67486 -9.62977 -9.14667 -8.90981 -8.78563 -8.25343 -8.17205 -7.53890 -5.95265 -4.14528 3.23088 3.32343 3.33211 3.42449 3.85503 4.19302 4.32420 4.80652 5.09211 5.17137 5.26562 5.37063 5.41500 5.43469 5.46974 5.53098 5.59196 5.72756 5.78574 5.95018 6.06287 6.07891 6.18439 6.24354 6.36294 6.59376 6.66098 6.69788 6.80274 6.93320 7.04360 7.15034 7.23388 7.30202 7.62258 7.77731 7.89048 8.05194 8.36612 8.82282 9.06157 9.48411 9.62217 10.94404 Molecular weight = 270.17amu Principal moments of inertia in cm(-1) A = 0.019341 B = 0.006276 C = 0.005443 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1447.377940 B = 4460.455102 C = 5143.410872 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.117 3.883 3 N -0.631 5.631 4 C 0.143 3.857 5 C 0.044 3.956 6 O -0.388 6.388 7 C 0.033 3.967 8 C 0.705 3.295 9 O -0.612 6.612 10 N -0.699 5.699 11 C 0.184 3.816 12 C 0.037 3.963 13 C -0.496 4.496 14 H 0.059 0.941 15 C 0.077 3.923 16 N -0.862 5.862 17 Si 0.888 3.112 18 H -0.280 1.280 19 H -0.286 1.286 20 H -0.273 1.273 21 C -0.198 4.198 22 C -0.213 4.213 23 H 0.051 0.949 24 H 0.059 0.941 25 H 0.068 0.932 26 H 0.079 0.921 27 H 0.070 0.930 28 H 0.076 0.924 29 H 0.094 0.906 30 H 0.051 0.949 31 H 0.056 0.944 32 H 0.038 0.962 33 H 0.081 0.919 34 H 0.036 0.964 35 H 0.393 0.607 36 H 0.013 0.987 37 H 0.111 0.889 38 H 0.261 0.739 39 H 0.066 0.934 40 H 0.079 0.921 41 H 0.074 0.926 42 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.022 -4.787 -10.500 12.586 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C -0.007 4.007 3 N -0.369 5.369 4 C 0.019 3.981 5 C -0.034 4.034 6 O -0.307 6.307 7 C -0.064 4.064 8 C 0.407 3.593 9 O -0.493 6.493 10 N -0.350 5.350 11 C 0.060 3.940 12 C 0.036 3.964 13 C -0.533 4.533 14 H 0.077 0.923 15 C -0.127 4.127 16 N -0.498 5.498 17 Si 0.715 3.285 18 H -0.207 1.207 19 H -0.212 1.212 20 H -0.198 1.198 21 C -0.237 4.237 22 C -0.250 4.250 23 H 0.070 0.930 24 H 0.078 0.922 25 H 0.087 0.913 26 H 0.098 0.902 27 H 0.089 0.911 28 H 0.094 0.906 29 H 0.113 0.887 30 H 0.069 0.931 31 H 0.074 0.926 32 H 0.057 0.943 33 H 0.100 0.900 34 H 0.055 0.945 35 H 0.229 0.771 36 H 0.031 0.969 37 H 0.129 0.871 38 H 0.072 0.928 39 H 0.085 0.915 40 H 0.097 0.903 41 H 0.093 0.907 42 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 5.145 -3.959 -10.588 12.420 hybrid contribution -0.899 -0.563 0.061 1.062 sum 4.246 -4.522 -10.527 12.219 Atomic orbital electron populations 1.22245 0.96480 1.01675 1.02874 1.21363 0.93878 0.82858 1.02616 1.46989 1.71028 1.14223 1.04673 1.21167 0.93934 0.98285 0.84738 1.23128 0.99432 0.82149 0.98647 1.87870 1.31631 1.26103 1.85066 1.22679 0.85274 1.01011 0.97406 1.15891 0.79177 0.83773 0.80471 1.90798 1.51364 1.20544 1.86561 1.44894 1.68187 1.17650 1.04246 1.20888 0.95227 0.98008 0.79864 1.19264 0.92899 0.95269 0.88978 1.20468 0.91066 1.01957 1.39795 0.92260 1.24959 0.98607 0.95232 0.93912 1.69912 1.32425 1.08643 1.38822 0.86664 0.85212 0.78961 0.77655 1.20656 1.21181 1.19814 1.22930 1.03839 0.97473 0.99464 1.22952 0.98772 0.94456 1.08863 0.93034 0.92198 0.91282 0.90243 0.91140 0.90607 0.88741 0.93116 0.92559 0.94321 0.90011 0.94515 0.77144 0.96889 0.87130 0.92839 0.91505 0.90271 0.90715 0.91411 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.66 10.24 37.16 0.38 -2.28 16 2 C 0.12 1.79 5.72 -4.04 -0.02 1.77 16 3 N -0.63 -11.26 2.44 -179.42 -0.44 -11.70 16 4 C 0.14 2.17 5.79 -4.04 -0.02 2.14 16 5 C 0.04 0.61 6.28 37.16 0.23 0.84 16 6 O -0.39 -5.23 9.48 -35.23 -0.33 -5.57 16 7 C 0.03 0.34 11.01 101.05 1.11 1.45 16 8 C 0.71 15.63 8.25 -86.92 -0.72 14.91 16 9 O -0.61 -15.46 15.99 5.29 0.08 -15.38 16 10 N -0.70 -15.67 4.90 -65.23 -0.32 -15.99 16 11 C 0.18 4.49 4.61 -4.04 -0.02 4.47 16 12 C 0.04 0.88 2.04 -155.66 -0.32 0.56 16 13 C -0.50 -12.60 8.40 -34.44 -0.29 -12.89 16 14 H 0.06 1.51 7.82 -52.48 -0.41 1.10 16 15 C 0.08 1.98 5.29 -17.82 -0.09 1.89 16 16 N -0.86 -23.06 10.18 55.43 0.56 -22.50 16 17 Si 0.89 20.12 29.54 -169.99 -5.02 15.10 16 18 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 19 H -0.29 -6.54 7.11 56.52 0.40 -6.14 16 20 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 21 C -0.20 -4.39 9.96 -26.69 -0.27 -4.65 16 22 C -0.21 -4.50 9.92 -26.69 -0.26 -4.77 16 23 H 0.05 0.74 8.14 -51.93 -0.42 0.31 16 24 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 25 H 0.07 1.30 8.14 -51.93 -0.42 0.88 16 26 H 0.08 1.10 7.07 -51.93 -0.37 0.73 16 27 H 0.07 1.11 6.37 -51.93 -0.33 0.78 16 28 H 0.08 0.98 8.07 -51.93 -0.42 0.57 16 29 H 0.09 1.53 7.51 -51.93 -0.39 1.14 16 30 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 31 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 32 H 0.04 0.40 8.14 -51.93 -0.42 -0.03 16 33 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 34 H 0.04 0.32 8.14 -51.93 -0.42 -0.10 16 35 H 0.39 8.46 5.84 -40.82 -0.24 8.22 16 36 H 0.01 0.32 8.08 -51.93 -0.42 -0.10 16 37 H 0.11 3.07 5.97 -51.93 -0.31 2.76 16 38 H 0.26 6.89 8.32 -40.82 -0.34 6.55 16 39 H 0.07 1.40 8.14 -51.93 -0.42 0.98 16 40 H 0.08 1.74 8.14 -51.93 -0.42 1.32 16 41 H 0.07 1.53 8.14 -51.93 -0.42 1.11 16 42 H 0.07 1.35 8.14 -51.93 -0.42 0.93 16 LS Contribution 344.11 15.07 5.19 5.19 Total: -1.00 -29.23 344.11 -7.66 -36.89 By element: Atomic # 1 Polarization: 17.62 SS G_CDS: -7.09 Total: 10.52 kcal Atomic # 6 Polarization: 3.72 SS G_CDS: -0.29 Total: 3.43 kcal Atomic # 7 Polarization: -50.00 SS G_CDS: -0.19 Total: -50.19 kcal Atomic # 8 Polarization: -20.69 SS G_CDS: -0.25 Total: -20.94 kcal Atomic # 14 Polarization: 20.12 SS G_CDS: -5.02 Total: 15.10 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -29.23 -7.66 -36.89 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000355831112.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.367 kcal (2) G-P(sol) polarization free energy of solvation -29.234 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.600 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.659 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.893 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.259 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds