Wall clock time and date at job start Mon Mar 30 2020 00:57:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46502 * 109.47119 * 2 1 4 4 C 1.46507 * 119.99718 * 273.09511 * 3 2 1 5 5 C 1.53001 * 109.46498 * 269.99611 * 4 3 2 6 6 O 1.42893 * 109.47283 * 65.00520 * 5 4 3 7 7 C 1.42899 * 114.00126 * 179.97438 * 6 5 4 8 8 C 1.34779 * 120.00101 * 93.08733 * 3 2 1 9 9 O 1.21588 * 119.99795 * 174.15475 * 8 3 2 10 10 N 1.34776 * 119.99926 * 354.43785 * 8 3 2 11 11 C 1.46497 * 119.99596 * 184.55139 * 10 8 3 12 12 C 1.53004 * 109.46792 * 175.02012 * 11 10 8 13 13 C 1.50695 * 115.55101 * 306.47150 * 12 11 10 14 14 H 1.08004 * 120.00427 * 144.19606 * 13 12 11 15 15 C 1.37877 * 120.00359 * 324.20408 * 13 12 11 16 16 N 1.31519 * 119.99671 * 3.29538 * 15 13 12 17 17 Si 1.86797 * 120.00549 * 183.29364 * 15 13 12 18 18 H 1.48501 * 109.47011 * 89.99629 * 17 15 13 19 19 H 1.48501 * 109.47324 * 209.99762 * 17 15 13 20 20 H 1.48504 * 109.46955 * 329.99808 * 17 15 13 21 21 C 1.53006 * 117.49762 * 160.80483 * 12 11 10 22 22 C 1.53003 * 117.49925 * 92.14570 * 12 11 10 23 23 H 1.09003 * 109.47147 * 59.99958 * 1 2 3 24 24 H 1.08995 * 109.47169 * 180.02562 * 1 2 3 25 25 H 1.09002 * 109.46747 * 300.00257 * 1 2 3 26 26 H 1.08995 * 109.46832 * 240.00135 * 2 1 3 27 27 H 1.09000 * 109.47153 * 119.99505 * 2 1 3 28 28 H 1.08993 * 109.46993 * 29.99502 * 4 3 2 29 29 H 1.09000 * 109.46817 * 150.00185 * 4 3 2 30 30 H 1.09003 * 109.46668 * 185.00002 * 5 4 3 31 31 H 1.09002 * 109.47294 * 304.99825 * 5 4 3 32 32 H 1.08992 * 109.47396 * 59.99642 * 7 6 5 33 33 H 1.09005 * 109.46897 * 179.97438 * 7 6 5 34 34 H 1.09005 * 109.46892 * 299.99557 * 7 6 5 35 35 H 0.97003 * 119.99850 * 4.54289 * 10 8 3 36 36 H 1.08996 * 109.47188 * 295.01474 * 11 10 8 37 37 H 1.08995 * 109.47613 * 55.02056 * 11 10 8 38 38 H 0.97002 * 119.99942 * 185.00844 * 16 15 13 39 39 H 1.08994 * 117.49771 * 359.97438 * 21 12 11 40 40 H 1.08998 * 117.49825 * 145.02175 * 21 12 11 41 41 H 1.09005 * 117.49823 * 214.98043 * 22 12 11 42 42 H 1.08998 * 117.50060 * 359.97194 * 22 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1979 2.0947 -1.2670 5 6 3.6185 1.8629 -1.7857 6 8 3.7901 0.4802 -2.1029 7 6 5.0899 0.1547 -2.5995 8 6 2.3023 1.9957 1.1655 9 8 2.8071 3.1018 1.1624 10 7 2.0319 1.3816 2.3344 11 6 2.2473 2.0877 3.5997 12 6 1.7500 1.2210 4.7584 13 6 0.3292 0.7326 4.6415 14 1 0.0642 -0.2495 5.0045 15 6 -0.6325 1.5392 4.0711 16 7 -0.2975 2.7083 3.5704 17 14 -2.4111 0.9717 4.0092 18 1 -3.1169 1.4209 5.2361 19 1 -3.0751 1.5534 2.8151 20 1 -2.4552 -0.5104 3.9273 21 6 2.2719 1.5473 6.1592 22 6 2.7630 0.2930 5.4319 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 -1.0276 0.0005 25 1 -0.3633 0.5139 0.8900 26 1 1.8933 -0.5138 -0.8900 27 1 1.8934 -0.5138 0.8900 28 1 1.4793 1.7239 -1.9977 29 1 2.0383 3.1613 -1.1091 30 1 3.7811 2.4637 -2.6805 31 1 4.3371 2.1516 -1.0187 32 1 5.8393 0.4081 -1.8497 33 1 5.1394 -0.9125 -2.8160 34 1 5.2826 0.7201 -3.5113 35 1 1.6945 0.4721 2.3377 36 1 3.3109 2.2889 3.7270 37 1 1.6982 3.0292 3.5885 38 1 -0.9833 3.3068 3.2349 39 1 2.9698 2.3790 6.2552 40 1 1.5877 1.4081 6.9962 41 1 2.4017 -0.6707 5.7908 42 1 3.7836 0.2996 5.0493 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000355831112.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:57:30 Heat of formation + Delta-G solvation = -62.712874 kcal Electronic energy + Delta-G solvation = -22243.813556 eV Core-core repulsion = 19031.653052 eV Total energy + Delta-G solvation = -3212.160503 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 270.173 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.07515 -38.93651 -38.38164 -36.66654 -34.76485 -34.07446 -32.21120 -30.08219 -27.79734 -27.31171 -26.65849 -24.18869 -23.66473 -22.92641 -21.08517 -20.40374 -19.10072 -18.00424 -17.58239 -17.12400 -16.80481 -16.55248 -16.24383 -15.76459 -15.40486 -15.18185 -14.92424 -14.69335 -14.27627 -13.89817 -13.55225 -13.43059 -13.22377 -12.93544 -12.91185 -12.76239 -12.60646 -12.50881 -12.28593 -12.12774 -12.01483 -11.89055 -11.49655 -11.00450 -10.81154 -10.64458 -10.57070 -10.12587 -9.82522 -9.20840 -7.90506 -6.15189 1.42098 1.46504 1.53639 1.93625 2.42860 2.46562 2.90392 3.04131 3.38098 3.69070 4.09968 4.13527 4.23282 4.30919 4.37558 4.44417 4.54510 4.56241 4.57570 4.60233 4.73765 4.78840 4.84542 4.87421 4.88840 4.97725 4.99473 4.99902 5.15201 5.31802 5.41202 5.55226 5.63598 5.77628 5.99517 6.04197 6.16601 6.29719 6.41830 6.85968 7.35095 7.49683 7.89367 8.96496 Molecular weight = 270.17amu Principal moments of inertia in cm(-1) A = 0.019341 B = 0.006276 C = 0.005443 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1447.377940 B = 4460.455102 C = 5143.410872 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.117 3.883 3 N -0.626 5.626 4 C 0.137 3.863 5 C 0.054 3.946 6 O -0.402 6.402 7 C 0.028 3.972 8 C 0.699 3.301 9 O -0.650 6.650 10 N -0.696 5.696 11 C 0.197 3.803 12 C 0.007 3.993 13 C -0.501 4.501 14 H 0.057 0.943 15 C 0.041 3.959 16 N -0.886 5.886 17 Si 0.942 3.058 18 H -0.283 1.283 19 H -0.291 1.291 20 H -0.263 1.263 21 C -0.198 4.198 22 C -0.187 4.187 23 H 0.061 0.939 24 H 0.084 0.916 25 H 0.028 0.972 26 H 0.104 0.896 27 H 0.065 0.935 28 H 0.104 0.896 29 H 0.078 0.922 30 H 0.079 0.921 31 H 0.028 0.972 32 H 0.032 0.968 33 H 0.099 0.901 34 H 0.054 0.946 35 H 0.398 0.602 36 H 0.007 0.993 37 H 0.075 0.925 38 H 0.254 0.746 39 H 0.074 0.926 40 H 0.078 0.922 41 H 0.085 0.915 42 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.026 -6.674 -11.685 14.365 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C -0.005 4.005 3 N -0.363 5.363 4 C 0.013 3.987 5 C -0.023 4.023 6 O -0.321 6.321 7 C -0.068 4.068 8 C 0.400 3.600 9 O -0.534 6.534 10 N -0.348 5.348 11 C 0.072 3.928 12 C 0.006 3.994 13 C -0.539 4.539 14 H 0.076 0.924 15 C -0.161 4.161 16 N -0.522 5.522 17 Si 0.768 3.232 18 H -0.209 1.209 19 H -0.217 1.217 20 H -0.187 1.187 21 C -0.237 4.237 22 C -0.224 4.224 23 H 0.080 0.920 24 H 0.103 0.897 25 H 0.048 0.952 26 H 0.122 0.878 27 H 0.084 0.916 28 H 0.122 0.878 29 H 0.096 0.904 30 H 0.097 0.903 31 H 0.047 0.953 32 H 0.051 0.949 33 H 0.118 0.882 34 H 0.073 0.927 35 H 0.233 0.767 36 H 0.026 0.974 37 H 0.092 0.908 38 H 0.064 0.936 39 H 0.093 0.907 40 H 0.097 0.903 41 H 0.103 0.897 42 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 5.146 -5.896 -11.796 14.156 hybrid contribution -0.848 -0.005 0.396 0.936 sum 4.298 -5.901 -11.401 13.538 Atomic orbital electron populations 1.22173 0.96116 1.02837 1.01368 1.21514 0.94019 0.81442 1.03542 1.47077 1.69908 1.15130 1.04171 1.21386 0.95929 0.97376 0.83993 1.22923 0.97405 0.83070 0.98949 1.87819 1.33382 1.25578 1.85358 1.22875 0.83679 1.02457 0.97835 1.16123 0.78982 0.83457 0.81437 1.90758 1.53078 1.22311 1.87287 1.44756 1.68358 1.17671 1.03985 1.20543 0.94111 0.96955 0.81196 1.19305 0.93238 0.97194 0.89616 1.20635 0.91954 1.01768 1.39499 0.92443 1.25511 1.01597 0.95200 0.93747 1.70100 1.32798 1.09539 1.39813 0.85810 0.81379 0.78967 0.77024 1.20927 1.21698 1.18729 1.22951 1.03865 0.98537 0.98301 1.22942 0.98607 0.94252 1.06642 0.91960 0.89711 0.95228 0.87751 0.91641 0.87782 0.90378 0.90263 0.95348 0.94891 0.88212 0.92740 0.76654 0.97443 0.90760 0.93633 0.90738 0.90305 0.89662 0.89995 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.80 10.24 71.98 0.74 -4.06 16 2 C 0.12 3.42 5.72 86.38 0.49 3.91 16 3 N -0.63 -22.05 2.44 -839.81 -2.05 -24.09 16 4 C 0.14 3.99 5.79 86.38 0.50 4.49 16 5 C 0.05 1.41 6.28 71.98 0.45 1.87 16 6 O -0.40 -9.89 9.48 -148.98 -1.41 -11.30 16 7 C 0.03 0.50 11.01 113.37 1.25 1.75 16 8 C 0.70 31.55 8.25 179.05 1.48 33.03 16 9 O -0.65 -34.01 15.99 -3.99 -0.06 -34.07 16 10 N -0.70 -31.75 4.90 -478.55 -2.35 -34.10 16 11 C 0.20 9.82 4.61 86.38 0.40 10.22 16 12 C 0.01 0.34 2.04 -52.93 -0.11 0.23 16 13 C -0.50 -25.36 8.40 25.60 0.22 -25.14 16 14 H 0.06 2.88 7.82 -2.91 -0.02 2.85 16 15 C 0.04 2.12 5.29 84.65 0.45 2.57 16 16 N -0.89 -48.54 10.18 21.45 0.22 -48.32 16 17 Si 0.94 41.34 29.54 68.60 2.03 43.37 16 18 H -0.28 -12.48 7.11 99.48 0.71 -11.77 16 19 H -0.29 -12.90 7.11 99.48 0.71 -12.20 16 20 H -0.26 -11.01 7.11 99.48 0.71 -10.31 16 21 C -0.20 -8.59 9.96 30.62 0.30 -8.29 16 22 C -0.19 -7.60 9.92 30.62 0.30 -7.29 16 23 H 0.06 1.64 8.14 -2.39 -0.02 1.62 16 24 H 0.08 2.01 8.14 -2.39 -0.02 1.99 16 25 H 0.03 1.08 8.14 -2.39 -0.02 1.06 16 26 H 0.10 2.57 7.07 -2.39 -0.02 2.56 16 27 H 0.07 1.98 6.37 -2.39 -0.02 1.96 16 28 H 0.10 2.44 8.07 -2.39 -0.02 2.43 16 29 H 0.08 2.54 7.51 -2.39 -0.02 2.53 16 30 H 0.08 1.61 8.14 -2.39 -0.02 1.59 16 31 H 0.03 0.89 8.14 -2.39 -0.02 0.87 16 32 H 0.03 0.63 8.14 -2.39 -0.02 0.61 16 33 H 0.10 1.43 8.14 -2.38 -0.02 1.41 16 34 H 0.05 0.79 8.14 -2.38 -0.02 0.77 16 35 H 0.40 17.17 5.84 -92.71 -0.54 16.63 16 36 H 0.01 0.37 8.08 -2.39 -0.02 0.35 16 37 H 0.07 4.30 5.97 -2.39 -0.01 4.28 16 38 H 0.25 13.80 8.32 -92.71 -0.77 13.02 16 39 H 0.07 3.08 8.14 -2.39 -0.02 3.06 16 40 H 0.08 3.39 8.14 -2.39 -0.02 3.37 16 41 H 0.08 3.28 8.14 -2.38 -0.02 3.26 16 42 H 0.08 3.09 8.14 -2.39 -0.02 3.07 16 Total: -1.00 -63.51 344.11 3.30 -60.21 By element: Atomic # 1 Polarization: 34.57 SS G_CDS: 0.45 Total: 35.02 kcal Atomic # 6 Polarization: 6.82 SS G_CDS: 6.47 Total: 13.29 kcal Atomic # 7 Polarization: -102.34 SS G_CDS: -4.17 Total: -106.51 kcal Atomic # 8 Polarization: -43.90 SS G_CDS: -1.48 Total: -45.38 kcal Atomic # 14 Polarization: 41.34 SS G_CDS: 2.03 Total: 43.37 kcal Total: -63.51 3.30 -60.21 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000355831112.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.504 kcal (2) G-P(sol) polarization free energy of solvation -63.508 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.011 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.298 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.209 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.713 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds